Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04360 and HER17_RS04365 overlap by 4 nucleotides HER17_RS04365 and HER17_RS04370 are separated by 389 nucleotides HER17_RS04370 and HER17_RS04375 are separated by 65 nucleotides HER17_RS04375 and HER17_RS04380 overlap by 8 nucleotides
HER17_RS04360: HER17_RS04360 - tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO, at 994,175 to 994,891
_RS04360
HER17_RS04365: HER17_RS04365 - Rcs stress response system protein RcsF, at 994,888 to 995,298
_RS04365
HER17_RS04370: HER17_RS04370 - MetQ/NlpA family lipoprotein, at 995,688 to 996,503
_RS04370
HER17_RS04375: HER17_RS04375 - methionine ABC transporter permease MetI, at 996,569 to 997,222
_RS04375
HER17_RS04380: HER17_RS04380 - methionine ABC transporter ATP-binding protein MetN, at 997,215 to 998,246
_RS04380
Position (kb) 995
996
997 Strain fitness (log2 ratio) -2
-1
0
1
2 at 994.767 kb on + strand, within HER17_RS04360 at 994.767 kb on + strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.768 kb on - strand, within HER17_RS04360 at 994.775 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.778 kb on + strand, within HER17_RS04360 at 994.779 kb on - strand, within HER17_RS04360 at 994.845 kb on + strand at 994.845 kb on + strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.846 kb on - strand at 994.936 kb on - strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.937 kb on + strand, within HER17_RS04365 at 994.938 kb on - strand, within HER17_RS04365 at 994.938 kb on - strand, within HER17_RS04365 at 994.938 kb on - strand, within HER17_RS04365 at 994.938 kb on - strand, within HER17_RS04365 at 995.025 kb on + strand, within HER17_RS04365 at 995.026 kb on - strand, within HER17_RS04365 at 995.120 kb on - strand, within HER17_RS04365 at 995.136 kb on + strand, within HER17_RS04365 at 995.136 kb on + strand, within HER17_RS04365 at 995.137 kb on - strand, within HER17_RS04365 at 995.137 kb on - strand, within HER17_RS04365 at 995.137 kb on - strand, within HER17_RS04365 at 995.137 kb on - strand, within HER17_RS04365 at 995.139 kb on - strand, within HER17_RS04365 at 995.139 kb on - strand, within HER17_RS04365 at 995.140 kb on + strand, within HER17_RS04365 at 995.140 kb on + strand, within HER17_RS04365 at 995.141 kb on - strand, within HER17_RS04365 at 995.141 kb on - strand, within HER17_RS04365 at 995.178 kb on + strand, within HER17_RS04365 at 995.191 kb on + strand, within HER17_RS04365 at 995.191 kb on + strand, within HER17_RS04365 at 995.208 kb on + strand, within HER17_RS04365 at 995.245 kb on + strand, within HER17_RS04365 at 995.246 kb on - strand, within HER17_RS04365 at 995.278 kb on + strand at 995.278 kb on + strand at 995.278 kb on + strand at 995.278 kb on + strand at 995.278 kb on + strand at 995.280 kb on + strand at 995.280 kb on + strand at 995.280 kb on + strand at 995.280 kb on + strand at 995.281 kb on - strand at 995.382 kb on - strand at 995.387 kb on + strand at 995.388 kb on - strand at 995.394 kb on + strand at 995.395 kb on - strand at 995.395 kb on - strand at 995.407 kb on - strand at 995.408 kb on + strand at 995.409 kb on - strand at 995.409 kb on - strand at 995.447 kb on + strand at 995.507 kb on + strand at 995.507 kb on + strand at 995.542 kb on + strand at 995.542 kb on + strand at 995.542 kb on + strand at 995.543 kb on - strand at 995.543 kb on - strand at 995.593 kb on - strand at 995.593 kb on - strand at 995.821 kb on - strand, within HER17_RS04370 at 995.821 kb on - strand, within HER17_RS04370 at 995.825 kb on - strand, within HER17_RS04370 at 995.890 kb on + strand, within HER17_RS04370 at 995.890 kb on + strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.891 kb on - strand, within HER17_RS04370 at 995.931 kb on + strand, within HER17_RS04370 at 995.931 kb on + strand, within HER17_RS04370 at 995.931 kb on + strand, within HER17_RS04370 at 996.180 kb on - strand, within HER17_RS04370 at 996.180 kb on - strand, within HER17_RS04370 at 996.180 kb on - strand, within HER17_RS04370 at 996.187 kb on - strand, within HER17_RS04370 at 996.232 kb on + strand, within HER17_RS04370 at 996.232 kb on + strand, within HER17_RS04370 at 996.298 kb on + strand, within HER17_RS04370 at 996.306 kb on - strand, within HER17_RS04370 at 996.315 kb on + strand, within HER17_RS04370 at 996.316 kb on - strand, within HER17_RS04370 at 996.334 kb on + strand, within HER17_RS04370 at 996.335 kb on - strand, within HER17_RS04370 at 996.405 kb on - strand, within HER17_RS04370 at 996.407 kb on + strand, within HER17_RS04370 at 996.407 kb on + strand, within HER17_RS04370 at 996.407 kb on + strand, within HER17_RS04370 at 996.413 kb on + strand, within HER17_RS04370 at 996.483 kb on - strand at 996.495 kb on - strand at 996.515 kb on + strand at 996.516 kb on - strand at 996.519 kb on + strand at 996.519 kb on + strand at 996.519 kb on + strand at 996.556 kb on + strand at 996.570 kb on + strand at 996.570 kb on + strand at 996.590 kb on + strand at 996.590 kb on + strand at 996.638 kb on + strand, within HER17_RS04375 at 996.641 kb on + strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.642 kb on - strand, within HER17_RS04375 at 996.644 kb on + strand, within HER17_RS04375 at 996.644 kb on + strand, within HER17_RS04375 at 996.645 kb on - strand, within HER17_RS04375 at 996.645 kb on - strand, within HER17_RS04375 at 996.648 kb on - strand, within HER17_RS04375 at 996.652 kb on + strand, within HER17_RS04375 at 996.671 kb on - strand, within HER17_RS04375 at 996.673 kb on - strand, within HER17_RS04375 at 996.673 kb on - strand, within HER17_RS04375 at 996.679 kb on + strand, within HER17_RS04375 at 996.679 kb on + strand, within HER17_RS04375 at 996.680 kb on - strand, within HER17_RS04375 at 996.681 kb on + strand, within HER17_RS04375 at 996.681 kb on + strand, within HER17_RS04375 at 996.681 kb on + strand, within HER17_RS04375 at 996.682 kb on - strand, within HER17_RS04375 at 996.682 kb on - strand, within HER17_RS04375 at 996.682 kb on - strand, within HER17_RS04375 at 996.682 kb on - strand, within HER17_RS04375 at 996.684 kb on - strand, within HER17_RS04375 at 996.687 kb on + strand, within HER17_RS04375 at 996.688 kb on - strand, within HER17_RS04375 at 996.688 kb on - strand, within HER17_RS04375 at 996.708 kb on - strand, within HER17_RS04375 at 996.708 kb on - strand, within HER17_RS04375 at 996.744 kb on + strand, within HER17_RS04375 at 996.745 kb on - strand, within HER17_RS04375 at 996.749 kb on + strand, within HER17_RS04375 at 996.750 kb on - strand, within HER17_RS04375 at 996.750 kb on - strand, within HER17_RS04375 at 996.758 kb on - strand, within HER17_RS04375 at 996.762 kb on - strand, within HER17_RS04375 at 996.762 kb on - strand, within HER17_RS04375 at 996.781 kb on + strand, within HER17_RS04375 at 996.782 kb on - strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.929 kb on + strand, within HER17_RS04375 at 996.930 kb on - strand, within HER17_RS04375 at 996.930 kb on - strand, within HER17_RS04375 at 996.930 kb on - strand, within HER17_RS04375 at 996.930 kb on - strand, within HER17_RS04375 at 996.934 kb on + strand, within HER17_RS04375 at 996.935 kb on - strand, within HER17_RS04375 at 996.935 kb on - strand, within HER17_RS04375 at 996.935 kb on - strand, within HER17_RS04375 at 997.016 kb on - strand, within HER17_RS04375 at 997.016 kb on - strand, within HER17_RS04375 at 997.039 kb on + strand, within HER17_RS04375 at 997.039 kb on + strand, within HER17_RS04375 at 997.040 kb on - strand, within HER17_RS04375 at 997.044 kb on - strand, within HER17_RS04375 at 997.066 kb on - strand, within HER17_RS04375 at 997.106 kb on - strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.107 kb on + strand, within HER17_RS04375 at 997.108 kb on - strand, within HER17_RS04375 at 997.108 kb on - strand, within HER17_RS04375 at 997.121 kb on + strand, within HER17_RS04375 at 997.122 kb on - strand, within HER17_RS04375 at 997.127 kb on + strand, within HER17_RS04375 at 997.128 kb on - strand, within HER17_RS04375 at 997.128 kb on - strand, within HER17_RS04375 at 997.200 kb on - strand at 997.222 kb on + strand at 997.223 kb on - strand at 997.242 kb on - strand at 997.280 kb on + strand at 997.339 kb on + strand, within HER17_RS04380 at 997.358 kb on + strand, within HER17_RS04380 at 997.358 kb on + strand, within HER17_RS04380 at 997.358 kb on + strand, within HER17_RS04380 at 997.422 kb on - strand, within HER17_RS04380 at 997.444 kb on - strand, within HER17_RS04380 at 997.444 kb on - strand, within HER17_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 994,767 + HER17_RS04360 0.83 +0.5 994,767 + HER17_RS04360 0.83 +0.8 994,768 - HER17_RS04360 0.83 -0.6 994,768 - HER17_RS04360 0.83 -0.1 994,768 - HER17_RS04360 0.83 -0.4 994,768 - HER17_RS04360 0.83 +0.8 994,768 - HER17_RS04360 0.83 +0.3 994,768 - HER17_RS04360 0.83 +0.7 994,775 + HER17_RS04360 0.84 -1.1 994,778 + HER17_RS04360 0.84 -1.2 994,778 + HER17_RS04360 0.84 +0.2 994,778 + HER17_RS04360 0.84 +0.3 994,778 + HER17_RS04360 0.84 -0.4 994,778 + HER17_RS04360 0.84 +0.6 994,778 + HER17_RS04360 0.84 -0.0 994,779 - HER17_RS04360 0.84 -0.2 994,845 + +0.2 994,845 + +0.6 994,846 - +0.7 994,846 - +0.7 994,846 - +0.6 994,846 - +0.8 994,936 - HER17_RS04365 0.12 -1.2 994,937 + HER17_RS04365 0.12 +0.8 994,937 + HER17_RS04365 0.12 -0.5 994,937 + HER17_RS04365 0.12 +0.3 994,937 + HER17_RS04365 0.12 +0.4 994,937 + HER17_RS04365 0.12 -0.9 994,938 - HER17_RS04365 0.12 -0.2 994,938 - HER17_RS04365 0.12 +0.2 994,938 - HER17_RS04365 0.12 -0.5 994,938 - HER17_RS04365 0.12 +0.2 995,025 + HER17_RS04365 0.33 -0.1 995,026 - HER17_RS04365 0.34 +0.1 995,120 - HER17_RS04365 0.56 +0.9 995,136 + HER17_RS04365 0.60 +0.0 995,136 + HER17_RS04365 0.60 -0.5 995,137 - HER17_RS04365 0.61 -0.3 995,137 - HER17_RS04365 0.61 -0.3 995,137 - HER17_RS04365 0.61 +0.5 995,137 - HER17_RS04365 0.61 +0.9 995,139 - HER17_RS04365 0.61 +0.2 995,139 - HER17_RS04365 0.61 +0.2 995,140 + HER17_RS04365 0.61 -0.6 995,140 + HER17_RS04365 0.61 -1.6 995,141 - HER17_RS04365 0.62 +0.5 995,141 - HER17_RS04365 0.62 -0.7 995,178 + HER17_RS04365 0.71 -0.7 995,191 + HER17_RS04365 0.74 +0.2 995,191 + HER17_RS04365 0.74 +0.1 995,208 + HER17_RS04365 0.78 +0.5 995,245 + HER17_RS04365 0.87 +0.0 995,246 - HER17_RS04365 0.87 +0.3 995,278 + -0.4 995,278 + -1.6 995,278 + -0.2 995,278 + +0.3 995,278 + -0.0 995,280 + -0.5 995,280 + -0.1 995,280 + -1.4 995,280 + -0.3 995,281 - -0.1 995,382 - +0.6 995,387 + -0.6 995,388 - +0.4 995,394 + +1.0 995,395 - -2.6 995,395 - -0.1 995,407 - -0.9 995,408 + +0.3 995,409 - -0.1 995,409 - +0.3 995,447 + +0.6 995,507 + -0.3 995,507 + -0.6 995,542 + +0.2 995,542 + +0.3 995,542 + +0.1 995,543 - -0.3 995,543 - +0.3 995,593 - +0.1 995,593 - -1.2 995,821 - HER17_RS04370 0.16 +0.0 995,821 - HER17_RS04370 0.16 +1.0 995,825 - HER17_RS04370 0.17 +0.9 995,890 + HER17_RS04370 0.25 -1.9 995,890 + HER17_RS04370 0.25 +0.9 995,891 - HER17_RS04370 0.25 -0.8 995,891 - HER17_RS04370 0.25 -0.1 995,891 - HER17_RS04370 0.25 -0.2 995,891 - HER17_RS04370 0.25 -0.0 995,891 - HER17_RS04370 0.25 +0.6 995,891 - HER17_RS04370 0.25 -0.0 995,931 + HER17_RS04370 0.30 -0.4 995,931 + HER17_RS04370 0.30 -1.4 995,931 + HER17_RS04370 0.30 -0.9 996,180 - HER17_RS04370 0.60 -0.5 996,180 - HER17_RS04370 0.60 -0.1 996,180 - HER17_RS04370 0.60 -1.6 996,187 - HER17_RS04370 0.61 +0.6 996,232 + HER17_RS04370 0.67 +0.3 996,232 + HER17_RS04370 0.67 -0.0 996,298 + HER17_RS04370 0.75 +0.5 996,306 - HER17_RS04370 0.76 -0.2 996,315 + HER17_RS04370 0.77 +0.3 996,316 - HER17_RS04370 0.77 -1.0 996,334 + HER17_RS04370 0.79 -0.3 996,335 - HER17_RS04370 0.79 -1.1 996,405 - HER17_RS04370 0.88 -0.0 996,407 + HER17_RS04370 0.88 +0.4 996,407 + HER17_RS04370 0.88 -0.2 996,407 + HER17_RS04370 0.88 +0.3 996,413 + HER17_RS04370 0.89 +0.2 996,483 - +0.3 996,495 - +0.2 996,515 + +1.0 996,516 - -0.2 996,519 + +0.1 996,519 + -0.4 996,519 + -0.0 996,556 + -0.0 996,570 + -2.5 996,570 + +0.5 996,590 + +0.2 996,590 + -0.1 996,638 + HER17_RS04375 0.11 -0.9 996,641 + HER17_RS04375 0.11 -0.5 996,642 - HER17_RS04375 0.11 -1.6 996,642 - HER17_RS04375 0.11 +0.5 996,642 - HER17_RS04375 0.11 +2.2 996,642 - HER17_RS04375 0.11 +2.1 996,642 - HER17_RS04375 0.11 -0.7 996,644 + HER17_RS04375 0.11 -0.3 996,644 + HER17_RS04375 0.11 -1.1 996,645 - HER17_RS04375 0.12 -0.2 996,645 - HER17_RS04375 0.12 +0.1 996,648 - HER17_RS04375 0.12 -0.0 996,652 + HER17_RS04375 0.13 -0.5 996,671 - HER17_RS04375 0.16 +0.1 996,673 - HER17_RS04375 0.16 +1.1 996,673 - HER17_RS04375 0.16 +0.0 996,679 + HER17_RS04375 0.17 -0.1 996,679 + HER17_RS04375 0.17 +0.1 996,680 - HER17_RS04375 0.17 +0.5 996,681 + HER17_RS04375 0.17 -0.7 996,681 + HER17_RS04375 0.17 -2.0 996,681 + HER17_RS04375 0.17 +0.7 996,682 - HER17_RS04375 0.17 -0.8 996,682 - HER17_RS04375 0.17 +0.1 996,682 - HER17_RS04375 0.17 +0.1 996,682 - HER17_RS04375 0.17 +0.4 996,684 - HER17_RS04375 0.18 +0.8 996,687 + HER17_RS04375 0.18 +0.2 996,688 - HER17_RS04375 0.18 +0.9 996,688 - HER17_RS04375 0.18 -0.1 996,708 - HER17_RS04375 0.21 -0.5 996,708 - HER17_RS04375 0.21 -0.6 996,744 + HER17_RS04375 0.27 -0.4 996,745 - HER17_RS04375 0.27 -1.7 996,749 + HER17_RS04375 0.28 +0.5 996,750 - HER17_RS04375 0.28 -0.4 996,750 - HER17_RS04375 0.28 -0.4 996,758 - HER17_RS04375 0.29 +0.4 996,762 - HER17_RS04375 0.30 -1.3 996,762 - HER17_RS04375 0.30 +0.6 996,781 + HER17_RS04375 0.32 -1.0 996,782 - HER17_RS04375 0.33 +0.4 996,929 + HER17_RS04375 0.55 -1.4 996,929 + HER17_RS04375 0.55 -1.9 996,929 + HER17_RS04375 0.55 -0.1 996,929 + HER17_RS04375 0.55 +1.6 996,929 + HER17_RS04375 0.55 +0.0 996,929 + HER17_RS04375 0.55 -0.3 996,929 + HER17_RS04375 0.55 -0.5 996,930 - HER17_RS04375 0.55 +0.5 996,930 - HER17_RS04375 0.55 -1.3 996,930 - HER17_RS04375 0.55 -0.3 996,930 - HER17_RS04375 0.55 -0.4 996,934 + HER17_RS04375 0.56 +0.0 996,935 - HER17_RS04375 0.56 +0.2 996,935 - HER17_RS04375 0.56 -0.6 996,935 - HER17_RS04375 0.56 -0.3 997,016 - HER17_RS04375 0.68 -0.8 997,016 - HER17_RS04375 0.68 -0.0 997,039 + HER17_RS04375 0.72 -0.6 997,039 + HER17_RS04375 0.72 -0.1 997,040 - HER17_RS04375 0.72 -0.2 997,044 - HER17_RS04375 0.73 +0.5 997,066 - HER17_RS04375 0.76 -0.3 997,106 - HER17_RS04375 0.82 -0.5 997,107 + HER17_RS04375 0.82 +0.8 997,107 + HER17_RS04375 0.82 -0.3 997,107 + HER17_RS04375 0.82 -0.4 997,107 + HER17_RS04375 0.82 -0.6 997,107 + HER17_RS04375 0.82 -0.6 997,108 - HER17_RS04375 0.82 -0.2 997,108 - HER17_RS04375 0.82 -0.5 997,121 + HER17_RS04375 0.84 +1.6 997,122 - HER17_RS04375 0.85 +0.8 997,127 + HER17_RS04375 0.85 +0.6 997,128 - HER17_RS04375 0.85 -0.5 997,128 - HER17_RS04375 0.85 -0.3 997,200 - +0.4 997,222 + -0.4 997,223 - +0.6 997,242 - -0.9 997,280 + +0.7 997,339 + HER17_RS04380 0.12 -0.8 997,358 + HER17_RS04380 0.14 -0.6 997,358 + HER17_RS04380 0.14 +0.2 997,358 + HER17_RS04380 0.14 -0.8 997,422 - HER17_RS04380 0.20 -0.1 997,444 - HER17_RS04380 0.22 -0.1 997,444 - HER17_RS04380 0.22 -1.1
Or see this region's nucleotide sequence