Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04115 and HER17_RS04120 are separated by 387 nucleotides HER17_RS04120 and HER17_RS04125 are separated by 226 nucleotides
HER17_RS04115: HER17_RS04115 - GTP diphosphokinase, at 935,337 to 937,571
_RS04115
HER17_RS04120: HER17_RS04120 - nucleoside triphosphate pyrophosphohydrolase, at 937,959 to 938,771
_RS04120
HER17_RS04125: HER17_RS04125 - CTP synthase (glutamine hydrolyzing), at 938,998 to 940,635
_RS04125
Position (kb) 937
938
939 Strain fitness (log2 ratio) -2
-1
0
1 at 937.103 kb on + strand, within HER17_RS04115 at 937.103 kb on + strand, within HER17_RS04115 at 937.104 kb on - strand, within HER17_RS04115 at 937.142 kb on - strand, within HER17_RS04115 at 937.318 kb on - strand, within HER17_RS04115 at 937.383 kb on - strand at 937.413 kb on - strand at 937.413 kb on - strand at 937.413 kb on - strand at 937.418 kb on - strand at 937.418 kb on - strand at 937.470 kb on - strand at 937.485 kb on + strand at 937.486 kb on - strand at 937.486 kb on - strand at 937.486 kb on - strand at 937.569 kb on + strand at 937.569 kb on + strand at 937.570 kb on - strand at 937.644 kb on - strand at 937.903 kb on - strand at 937.955 kb on + strand at 937.956 kb on - strand at 937.959 kb on - strand at 937.967 kb on - strand at 938.082 kb on + strand, within HER17_RS04120 at 938.083 kb on - strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.234 kb on + strand, within HER17_RS04120 at 938.235 kb on - strand, within HER17_RS04120 at 938.487 kb on + strand, within HER17_RS04120
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 937,103 + HER17_RS04115 0.79 +0.1 937,103 + HER17_RS04115 0.79 +0.8 937,104 - HER17_RS04115 0.79 -2.7 937,142 - HER17_RS04115 0.81 +0.3 937,318 - HER17_RS04115 0.89 -0.1 937,383 - +0.6 937,413 - +1.1 937,413 - +0.2 937,413 - -1.0 937,418 - +1.1 937,418 - -0.2 937,470 - -0.5 937,485 + +0.1 937,486 - -1.9 937,486 - +0.5 937,486 - +0.0 937,569 + +0.4 937,569 + +0.3 937,570 - -0.5 937,644 - -1.7 937,903 - -0.6 937,955 + +0.2 937,956 - +0.7 937,959 - -0.6 937,967 - +0.7 938,082 + HER17_RS04120 0.15 +0.4 938,083 - HER17_RS04120 0.15 -1.7 938,084 + HER17_RS04120 0.15 +0.5 938,084 + HER17_RS04120 0.15 -0.2 938,084 + HER17_RS04120 0.15 +0.2 938,084 + HER17_RS04120 0.15 -0.2 938,084 + HER17_RS04120 0.15 +0.1 938,085 - HER17_RS04120 0.15 -0.3 938,085 - HER17_RS04120 0.15 +0.7 938,085 - HER17_RS04120 0.15 +0.3 938,085 - HER17_RS04120 0.15 +0.7 938,100 + HER17_RS04120 0.17 +0.6 938,100 + HER17_RS04120 0.17 +0.8 938,100 + HER17_RS04120 0.17 +1.5 938,100 + HER17_RS04120 0.17 -0.3 938,101 - HER17_RS04120 0.17 +0.2 938,101 - HER17_RS04120 0.17 +0.5 938,101 - HER17_RS04120 0.17 +0.6 938,234 + HER17_RS04120 0.34 -1.2 938,235 - HER17_RS04120 0.34 +0.5 938,487 + HER17_RS04120 0.65 -0.1
Or see this region's nucleotide sequence