Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04055 and HER17_RS04060 are separated by 198 nucleotides HER17_RS04060 and HER17_RS04065 are separated by 169 nucleotides HER17_RS04065 and HER17_RS04070 are separated by 665 nucleotides
HER17_RS04055: HER17_RS04055 - FlxA-like family protein, at 917,124 to 917,474
_RS04055
HER17_RS04060: HER17_RS04060 - FlxA-like family protein, at 917,673 to 918,083
_RS04060
HER17_RS04065: HER17_RS04065 - PAS domain-containing methyl-accepting chemotaxis protein, at 918,253 to 919,788
_RS04065
HER17_RS04070: HER17_RS04070 - galactarate dehydratase, at 920,454 to 922,028
_RS04070
Position (kb) 918
919
920 Strain fitness (log2 ratio) -2
-1
0
1 at 917.262 kb on + strand, within HER17_RS04055 at 917.262 kb on + strand, within HER17_RS04055 at 917.262 kb on + strand, within HER17_RS04055 at 917.345 kb on + strand, within HER17_RS04055 at 917.361 kb on - strand, within HER17_RS04055 at 917.420 kb on + strand, within HER17_RS04055 at 917.421 kb on - strand, within HER17_RS04055 at 917.453 kb on + strand at 917.453 kb on + strand at 917.453 kb on + strand at 917.454 kb on - strand at 917.498 kb on + strand at 917.510 kb on - strand at 917.518 kb on + strand at 917.528 kb on + strand at 917.528 kb on + strand at 917.529 kb on - strand at 917.531 kb on - strand at 917.541 kb on + strand at 917.562 kb on + strand at 917.602 kb on - strand at 917.665 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.680 kb on + strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.681 kb on - strand at 917.797 kb on + strand, within HER17_RS04060 at 917.798 kb on - strand, within HER17_RS04060 at 917.849 kb on + strand, within HER17_RS04060 at 917.849 kb on + strand, within HER17_RS04060 at 917.885 kb on + strand, within HER17_RS04060 at 917.898 kb on + strand, within HER17_RS04060 at 917.898 kb on + strand, within HER17_RS04060 at 917.899 kb on - strand, within HER17_RS04060 at 917.966 kb on + strand, within HER17_RS04060 at 917.987 kb on + strand, within HER17_RS04060 at 918.026 kb on + strand, within HER17_RS04060 at 918.051 kb on + strand at 918.065 kb on + strand at 918.066 kb on - strand at 918.075 kb on - strand at 918.263 kb on + strand at 918.271 kb on - strand at 918.279 kb on + strand at 918.367 kb on + strand at 918.367 kb on + strand at 918.367 kb on + strand at 918.367 kb on + strand at 918.368 kb on - strand at 918.368 kb on - strand at 918.368 kb on - strand at 918.368 kb on - strand at 918.368 kb on - strand at 918.384 kb on + strand at 918.385 kb on - strand at 918.385 kb on - strand at 918.483 kb on + strand, within HER17_RS04065 at 918.484 kb on - strand, within HER17_RS04065 at 918.484 kb on - strand, within HER17_RS04065 at 918.523 kb on + strand, within HER17_RS04065 at 918.523 kb on + strand, within HER17_RS04065 at 918.523 kb on + strand, within HER17_RS04065 at 918.555 kb on + strand, within HER17_RS04065 at 918.634 kb on + strand, within HER17_RS04065 at 918.635 kb on - strand, within HER17_RS04065 at 918.717 kb on + strand, within HER17_RS04065 at 918.717 kb on + strand, within HER17_RS04065 at 918.718 kb on - strand, within HER17_RS04065 at 918.759 kb on + strand, within HER17_RS04065 at 918.780 kb on + strand, within HER17_RS04065 at 918.793 kb on - strand, within HER17_RS04065 at 918.870 kb on + strand, within HER17_RS04065 at 918.986 kb on - strand, within HER17_RS04065 at 918.993 kb on + strand, within HER17_RS04065 at 918.993 kb on + strand, within HER17_RS04065 at 919.099 kb on - strand, within HER17_RS04065 at 919.130 kb on - strand, within HER17_RS04065 at 919.132 kb on + strand, within HER17_RS04065 at 919.133 kb on - strand, within HER17_RS04065 at 919.348 kb on + strand, within HER17_RS04065 at 919.348 kb on + strand, within HER17_RS04065 at 919.358 kb on + strand, within HER17_RS04065 at 919.400 kb on + strand, within HER17_RS04065 at 919.400 kb on + strand, within HER17_RS04065 at 919.400 kb on + strand, within HER17_RS04065 at 919.400 kb on + strand, within HER17_RS04065 at 919.401 kb on - strand, within HER17_RS04065 at 919.401 kb on - strand, within HER17_RS04065 at 919.415 kb on + strand, within HER17_RS04065 at 919.415 kb on + strand, within HER17_RS04065 at 919.415 kb on + strand, within HER17_RS04065 at 919.443 kb on + strand, within HER17_RS04065 at 919.443 kb on + strand, within HER17_RS04065 at 919.443 kb on + strand, within HER17_RS04065 at 919.447 kb on + strand, within HER17_RS04065 at 919.455 kb on + strand, within HER17_RS04065 at 919.543 kb on + strand, within HER17_RS04065 at 919.576 kb on - strand, within HER17_RS04065 at 919.626 kb on + strand, within HER17_RS04065 at 919.626 kb on + strand, within HER17_RS04065 at 919.694 kb on + strand at 919.695 kb on - strand at 919.695 kb on - strand at 919.695 kb on - strand at 919.698 kb on + strand at 919.698 kb on + strand at 919.698 kb on + strand at 919.699 kb on - strand at 919.699 kb on - strand at 919.713 kb on + strand at 919.714 kb on - strand at 919.714 kb on - strand at 919.732 kb on + strand at 919.732 kb on + strand at 919.733 kb on - strand at 919.755 kb on - strand at 919.755 kb on - strand at 919.767 kb on + strand at 919.767 kb on + strand at 919.776 kb on + strand at 919.789 kb on + strand at 919.803 kb on + strand at 919.804 kb on - strand at 919.807 kb on + strand at 919.807 kb on + strand at 920.000 kb on - strand at 920.000 kb on - strand at 920.000 kb on - strand at 920.002 kb on - strand at 920.009 kb on - strand at 920.015 kb on - strand at 920.021 kb on + strand at 920.026 kb on - strand at 920.045 kb on + strand at 920.045 kb on + strand at 920.045 kb on + strand at 920.045 kb on + strand at 920.046 kb on - strand at 920.046 kb on - strand at 920.047 kb on + strand at 920.048 kb on - strand at 920.071 kb on - strand at 920.106 kb on - strand at 920.133 kb on + strand at 920.178 kb on + strand at 920.183 kb on - strand at 920.286 kb on - strand at 920.404 kb on + strand at 920.452 kb on - strand at 920.493 kb on - strand at 920.571 kb on + strand at 920.572 kb on - strand at 920.572 kb on - strand at 920.572 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 917,262 + HER17_RS04055 0.39 +0.7 917,262 + HER17_RS04055 0.39 +0.0 917,262 + HER17_RS04055 0.39 -1.3 917,345 + HER17_RS04055 0.63 +0.4 917,361 - HER17_RS04055 0.68 -0.0 917,420 + HER17_RS04055 0.84 +0.2 917,421 - HER17_RS04055 0.85 +0.9 917,453 + -0.0 917,453 + -0.0 917,453 + -0.2 917,454 - -0.1 917,498 + +0.4 917,510 - -1.2 917,518 + -0.1 917,528 + -0.2 917,528 + +0.2 917,529 - +0.4 917,531 - -0.3 917,541 + +0.9 917,562 + -0.1 917,602 - -1.2 917,665 + -0.5 917,680 + +0.0 917,680 + +0.2 917,680 + +0.5 917,680 + -0.1 917,680 + -2.3 917,680 + -0.3 917,681 - -1.1 917,681 - +0.0 917,681 - -0.1 917,681 - -0.0 917,681 - +0.1 917,681 - -1.3 917,797 + HER17_RS04060 0.30 +0.1 917,798 - HER17_RS04060 0.30 -0.1 917,849 + HER17_RS04060 0.43 +0.9 917,849 + HER17_RS04060 0.43 -0.6 917,885 + HER17_RS04060 0.52 -1.3 917,898 + HER17_RS04060 0.55 -0.0 917,898 + HER17_RS04060 0.55 +0.4 917,899 - HER17_RS04060 0.55 +0.5 917,966 + HER17_RS04060 0.71 +0.3 917,987 + HER17_RS04060 0.76 +0.6 918,026 + HER17_RS04060 0.86 +0.2 918,051 + +0.1 918,065 + -0.8 918,066 - -0.8 918,075 - -0.1 918,263 + +0.3 918,271 - +0.4 918,279 + -1.3 918,367 + -0.5 918,367 + +0.3 918,367 + +0.3 918,367 + -0.1 918,368 - -0.1 918,368 - -0.6 918,368 - +0.1 918,368 - -0.5 918,368 - -0.2 918,384 + +0.8 918,385 - -0.9 918,385 - +1.0 918,483 + HER17_RS04065 0.15 -0.1 918,484 - HER17_RS04065 0.15 +0.8 918,484 - HER17_RS04065 0.15 +0.2 918,523 + HER17_RS04065 0.18 -1.1 918,523 + HER17_RS04065 0.18 +0.2 918,523 + HER17_RS04065 0.18 +0.0 918,555 + HER17_RS04065 0.20 +0.5 918,634 + HER17_RS04065 0.25 -0.0 918,635 - HER17_RS04065 0.25 +0.4 918,717 + HER17_RS04065 0.30 +0.3 918,717 + HER17_RS04065 0.30 -0.3 918,718 - HER17_RS04065 0.30 +0.4 918,759 + HER17_RS04065 0.33 +0.4 918,780 + HER17_RS04065 0.34 -0.5 918,793 - HER17_RS04065 0.35 -0.1 918,870 + HER17_RS04065 0.40 -1.1 918,986 - HER17_RS04065 0.48 +0.7 918,993 + HER17_RS04065 0.48 +0.6 918,993 + HER17_RS04065 0.48 -0.3 919,099 - HER17_RS04065 0.55 +0.3 919,130 - HER17_RS04065 0.57 +0.2 919,132 + HER17_RS04065 0.57 +0.2 919,133 - HER17_RS04065 0.57 -0.4 919,348 + HER17_RS04065 0.71 +0.3 919,348 + HER17_RS04065 0.71 +1.3 919,358 + HER17_RS04065 0.72 +0.8 919,400 + HER17_RS04065 0.75 +0.7 919,400 + HER17_RS04065 0.75 +0.7 919,400 + HER17_RS04065 0.75 -0.8 919,400 + HER17_RS04065 0.75 +0.9 919,401 - HER17_RS04065 0.75 -0.1 919,401 - HER17_RS04065 0.75 +0.3 919,415 + HER17_RS04065 0.76 -0.2 919,415 + HER17_RS04065 0.76 +0.2 919,415 + HER17_RS04065 0.76 -0.3 919,443 + HER17_RS04065 0.77 -0.1 919,443 + HER17_RS04065 0.77 -0.5 919,443 + HER17_RS04065 0.77 -2.0 919,447 + HER17_RS04065 0.78 +0.0 919,455 + HER17_RS04065 0.78 -0.5 919,543 + HER17_RS04065 0.84 -2.4 919,576 - HER17_RS04065 0.86 +0.7 919,626 + HER17_RS04065 0.89 -0.3 919,626 + HER17_RS04065 0.89 +0.5 919,694 + -0.5 919,695 - +0.8 919,695 - -0.4 919,695 - -0.5 919,698 + -0.1 919,698 + +0.8 919,698 + +0.1 919,699 - +0.2 919,699 - -0.4 919,713 + +0.2 919,714 - +0.5 919,714 - -1.0 919,732 + +0.1 919,732 + -0.7 919,733 - +0.5 919,755 - +0.7 919,755 - +0.2 919,767 + +0.1 919,767 + +0.4 919,776 + -0.6 919,789 + +0.1 919,803 + +0.7 919,804 - +0.5 919,807 + +0.1 919,807 + +0.2 920,000 - +0.2 920,000 - -0.7 920,000 - -0.1 920,002 - -0.1 920,009 - -0.1 920,015 - +0.8 920,021 + +0.6 920,026 - +0.6 920,045 + +0.4 920,045 + -0.3 920,045 + +0.5 920,045 + +0.0 920,046 - +0.4 920,046 - +0.2 920,047 + +0.6 920,048 - -0.0 920,071 - +0.6 920,106 - -0.1 920,133 + +0.2 920,178 + -0.9 920,183 - -1.5 920,286 - -0.2 920,404 + -0.2 920,452 - -0.8 920,493 - +0.4 920,571 + -0.4 920,572 - -0.4 920,572 - +0.0 920,572 - -0.5
Or see this region's nucleotide sequence