Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS03975 and HER17_RS03980 are separated by 474 nucleotides HER17_RS03980 and HER17_RS03985 overlap by 4 nucleotides
HER17_RS03975: HER17_RS03975 - peptide-methionine (S)-S-oxide reductase MsrA, at 894,405 to 895,043
_RS03975
HER17_RS03980: HER17_RS03980 - autotransporter assembly complex protein TamA, at 895,518 to 897,233
_RS03980
HER17_RS03985: HER17_RS03985 - translocation/assembly module TamB, at 897,230 to 901,267
_RS03985
Position (kb) 895
896
897
898 Strain fitness (log2 ratio) -2
-1
0
1 at 894.623 kb on + strand, within HER17_RS03975 at 894.623 kb on + strand, within HER17_RS03975 at 894.624 kb on - strand, within HER17_RS03975 at 894.624 kb on - strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.625 kb on + strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.626 kb on - strand, within HER17_RS03975 at 894.629 kb on + strand, within HER17_RS03975 at 894.629 kb on + strand, within HER17_RS03975 at 894.630 kb on - strand, within HER17_RS03975 at 894.630 kb on - strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.721 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.786 kb on + strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.787 kb on - strand, within HER17_RS03975 at 894.814 kb on + strand, within HER17_RS03975 at 894.824 kb on + strand, within HER17_RS03975 at 894.826 kb on + strand, within HER17_RS03975 at 894.827 kb on - strand, within HER17_RS03975 at 894.827 kb on - strand, within HER17_RS03975 at 894.905 kb on + strand, within HER17_RS03975 at 894.906 kb on - strand, within HER17_RS03975 at 894.997 kb on - strand at 895.052 kb on + strand at 895.052 kb on + strand at 895.052 kb on + strand at 895.053 kb on - strand at 895.062 kb on + strand at 895.063 kb on - strand at 895.071 kb on + strand at 895.071 kb on + strand at 895.076 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.098 kb on - strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.122 kb on + strand at 895.123 kb on - strand at 895.123 kb on - strand at 895.123 kb on - strand at 895.124 kb on + strand at 895.125 kb on - strand at 895.139 kb on + strand at 895.139 kb on + strand at 895.140 kb on - strand at 895.146 kb on - strand at 895.146 kb on - strand at 895.150 kb on + strand at 895.150 kb on + strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.151 kb on - strand at 895.157 kb on + strand at 895.203 kb on + strand at 895.204 kb on - strand at 895.223 kb on + strand at 895.223 kb on + strand at 895.223 kb on + strand at 895.230 kb on - strand at 895.232 kb on + strand at 895.233 kb on - strand at 895.289 kb on + strand at 895.289 kb on + strand at 895.324 kb on + strand at 895.324 kb on + strand at 895.336 kb on + strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.337 kb on - strand at 895.338 kb on + strand at 895.338 kb on + strand at 895.338 kb on + strand at 895.339 kb on - strand at 895.339 kb on - strand at 895.346 kb on - strand at 895.346 kb on - strand at 895.377 kb on + strand at 895.377 kb on + strand at 895.377 kb on + strand at 895.378 kb on - strand at 895.396 kb on + strand at 895.397 kb on - strand at 895.472 kb on + strand at 895.532 kb on + strand at 895.532 kb on + strand at 895.532 kb on + strand at 895.533 kb on - strand at 895.533 kb on - strand at 895.597 kb on + strand at 895.597 kb on + strand at 895.621 kb on + strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.622 kb on - strand at 895.625 kb on + strand at 895.625 kb on + strand at 895.626 kb on - strand at 895.626 kb on - strand at 895.626 kb on - strand at 895.716 kb on + strand, within HER17_RS03980 at 895.716 kb on + strand, within HER17_RS03980 at 895.716 kb on + strand, within HER17_RS03980 at 895.860 kb on + strand, within HER17_RS03980 at 895.861 kb on - strand, within HER17_RS03980 at 895.958 kb on - strand, within HER17_RS03980 at 895.968 kb on + strand, within HER17_RS03980 at 896.078 kb on - strand, within HER17_RS03980 at 896.109 kb on + strand, within HER17_RS03980 at 896.109 kb on + strand, within HER17_RS03980 at 896.109 kb on + strand, within HER17_RS03980 at 896.110 kb on - strand, within HER17_RS03980 at 896.110 kb on - strand, within HER17_RS03980 at 896.148 kb on + strand, within HER17_RS03980 at 896.148 kb on + strand, within HER17_RS03980 at 896.148 kb on + strand, within HER17_RS03980 at 896.149 kb on - strand, within HER17_RS03980 at 896.149 kb on - strand, within HER17_RS03980 at 896.149 kb on - strand, within HER17_RS03980 at 896.173 kb on + strand, within HER17_RS03980 at 896.204 kb on + strand, within HER17_RS03980 at 896.204 kb on + strand, within HER17_RS03980 at 896.204 kb on + strand, within HER17_RS03980 at 896.204 kb on + strand, within HER17_RS03980 at 896.205 kb on - strand, within HER17_RS03980 at 896.205 kb on - strand, within HER17_RS03980 at 896.357 kb on + strand, within HER17_RS03980 at 896.397 kb on - strand, within HER17_RS03980 at 896.436 kb on - strand, within HER17_RS03980 at 896.475 kb on + strand, within HER17_RS03980 at 896.475 kb on + strand, within HER17_RS03980 at 896.478 kb on + strand, within HER17_RS03980 at 896.478 kb on + strand, within HER17_RS03980 at 896.479 kb on - strand, within HER17_RS03980 at 896.479 kb on - strand, within HER17_RS03980 at 896.655 kb on + strand, within HER17_RS03980 at 896.738 kb on + strand, within HER17_RS03980 at 896.867 kb on + strand, within HER17_RS03980 at 896.868 kb on - strand, within HER17_RS03980 at 896.932 kb on - strand, within HER17_RS03980 at 896.932 kb on - strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.933 kb on + strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.934 kb on - strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.937 kb on + strand, within HER17_RS03980 at 896.938 kb on - strand, within HER17_RS03980 at 896.945 kb on + strand, within HER17_RS03980 at 897.012 kb on + strand, within HER17_RS03980 at 897.013 kb on - strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.018 kb on + strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.019 kb on - strand, within HER17_RS03980 at 897.093 kb on - strand at 897.164 kb on + strand at 897.164 kb on + strand at 897.164 kb on + strand at 897.165 kb on - strand at 897.165 kb on - strand at 897.207 kb on + strand at 897.207 kb on + strand at 897.207 kb on + strand at 897.229 kb on + strand at 897.230 kb on - strand at 897.230 kb on - strand at 897.230 kb on - strand at 897.366 kb on + strand at 897.366 kb on + strand at 897.584 kb on - strand at 897.732 kb on + strand, within HER17_RS03985 at 897.733 kb on - strand, within HER17_RS03985 at 897.951 kb on + strand, within HER17_RS03985 at 897.951 kb on + strand, within HER17_RS03985 at 897.952 kb on - strand, within HER17_RS03985 at 897.952 kb on - strand, within HER17_RS03985 at 897.997 kb on + strand, within HER17_RS03985 at 898.005 kb on + strand, within HER17_RS03985 at 898.005 kb on + strand, within HER17_RS03985 at 898.015 kb on + strand, within HER17_RS03985 at 898.016 kb on - strand, within HER17_RS03985 at 898.016 kb on - strand, within HER17_RS03985 at 898.018 kb on + strand, within HER17_RS03985 at 898.019 kb on - strand, within HER17_RS03985 at 898.019 kb on - strand, within HER17_RS03985 at 898.153 kb on - strand, within HER17_RS03985 at 898.221 kb on + strand, within HER17_RS03985 at 898.222 kb on - strand, within HER17_RS03985
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 894,623 + HER17_RS03975 0.34 -0.3 894,623 + HER17_RS03975 0.34 -0.3 894,624 - HER17_RS03975 0.34 +0.8 894,624 - HER17_RS03975 0.34 +0.3 894,625 + HER17_RS03975 0.34 -0.7 894,625 + HER17_RS03975 0.34 -0.2 894,625 + HER17_RS03975 0.34 +0.4 894,625 + HER17_RS03975 0.34 +0.3 894,626 - HER17_RS03975 0.35 +0.6 894,626 - HER17_RS03975 0.35 +0.2 894,626 - HER17_RS03975 0.35 +0.6 894,626 - HER17_RS03975 0.35 +0.3 894,626 - HER17_RS03975 0.35 -0.3 894,629 + HER17_RS03975 0.35 +0.3 894,629 + HER17_RS03975 0.35 +0.1 894,630 - HER17_RS03975 0.35 +0.2 894,630 - HER17_RS03975 0.35 -0.8 894,721 + HER17_RS03975 0.49 -0.5 894,721 + HER17_RS03975 0.49 -0.1 894,721 + HER17_RS03975 0.49 +0.1 894,786 + HER17_RS03975 0.60 -1.1 894,786 + HER17_RS03975 0.60 -0.5 894,786 + HER17_RS03975 0.60 +0.5 894,786 + HER17_RS03975 0.60 -0.5 894,786 + HER17_RS03975 0.60 +0.4 894,787 - HER17_RS03975 0.60 -0.5 894,787 - HER17_RS03975 0.60 -0.6 894,787 - HER17_RS03975 0.60 -0.8 894,814 + HER17_RS03975 0.64 +0.0 894,824 + HER17_RS03975 0.66 +0.3 894,826 + HER17_RS03975 0.66 +0.7 894,827 - HER17_RS03975 0.66 +0.2 894,827 - HER17_RS03975 0.66 -0.6 894,905 + HER17_RS03975 0.78 +0.6 894,906 - HER17_RS03975 0.78 +0.3 894,997 - +0.3 895,052 + +0.7 895,052 + -0.6 895,052 + -2.2 895,053 - -0.6 895,062 + +0.9 895,063 - +0.9 895,071 + -0.2 895,071 + -0.2 895,076 - +0.1 895,098 - -0.8 895,098 - -1.2 895,098 - +0.8 895,098 - +0.6 895,122 + -0.3 895,122 + -0.5 895,122 + +0.5 895,122 + +0.3 895,122 + +0.7 895,122 + +0.3 895,123 - +0.4 895,123 - -0.4 895,123 - +1.4 895,124 + +0.6 895,125 - -1.0 895,139 + +0.7 895,139 + -0.0 895,140 - -0.2 895,146 - -0.1 895,146 - -0.5 895,150 + +0.1 895,150 + -0.1 895,151 - -0.5 895,151 - +0.2 895,151 - -0.1 895,151 - -0.4 895,157 + +0.4 895,203 + +0.5 895,204 - -0.1 895,223 + +0.8 895,223 + -0.7 895,223 + +0.7 895,230 - -0.8 895,232 + +0.1 895,233 - -0.3 895,289 + -0.1 895,289 + +0.2 895,324 + +0.5 895,324 + +0.7 895,336 + +0.4 895,337 - +0.8 895,337 - +0.2 895,337 - +0.4 895,337 - +1.0 895,337 - -0.1 895,337 - -0.2 895,337 - -0.1 895,338 + +0.3 895,338 + -0.2 895,338 + +0.3 895,339 - +0.8 895,339 - +0.1 895,346 - +0.4 895,346 - +0.2 895,377 + +0.3 895,377 + +0.7 895,377 + +0.1 895,378 - +0.8 895,396 + -0.1 895,397 - -0.2 895,472 + -0.5 895,532 + -1.3 895,532 + +0.3 895,532 + -0.7 895,533 - -0.8 895,533 - -0.9 895,597 + -0.4 895,597 + -0.0 895,621 + -0.3 895,622 - -0.2 895,622 - -0.2 895,622 - -0.7 895,622 - -0.2 895,625 + +0.4 895,625 + +0.8 895,626 - +0.3 895,626 - -0.5 895,626 - -0.9 895,716 + HER17_RS03980 0.12 -0.9 895,716 + HER17_RS03980 0.12 -0.2 895,716 + HER17_RS03980 0.12 -1.1 895,860 + HER17_RS03980 0.20 -1.1 895,861 - HER17_RS03980 0.20 +0.3 895,958 - HER17_RS03980 0.26 +0.5 895,968 + HER17_RS03980 0.26 -1.9 896,078 - HER17_RS03980 0.33 +0.4 896,109 + HER17_RS03980 0.34 +0.4 896,109 + HER17_RS03980 0.34 -0.6 896,109 + HER17_RS03980 0.34 -0.6 896,110 - HER17_RS03980 0.34 +0.6 896,110 - HER17_RS03980 0.34 -0.7 896,148 + HER17_RS03980 0.37 +0.0 896,148 + HER17_RS03980 0.37 -0.5 896,148 + HER17_RS03980 0.37 -0.2 896,149 - HER17_RS03980 0.37 -1.5 896,149 - HER17_RS03980 0.37 -0.4 896,149 - HER17_RS03980 0.37 +0.1 896,173 + HER17_RS03980 0.38 +0.1 896,204 + HER17_RS03980 0.40 +0.3 896,204 + HER17_RS03980 0.40 +0.2 896,204 + HER17_RS03980 0.40 +0.0 896,204 + HER17_RS03980 0.40 -0.3 896,205 - HER17_RS03980 0.40 -0.3 896,205 - HER17_RS03980 0.40 -1.0 896,357 + HER17_RS03980 0.49 +0.2 896,397 - HER17_RS03980 0.51 -1.3 896,436 - HER17_RS03980 0.53 -0.1 896,475 + HER17_RS03980 0.56 -0.1 896,475 + HER17_RS03980 0.56 +0.8 896,478 + HER17_RS03980 0.56 -1.0 896,478 + HER17_RS03980 0.56 +0.7 896,479 - HER17_RS03980 0.56 -0.3 896,479 - HER17_RS03980 0.56 -2.0 896,655 + HER17_RS03980 0.66 +0.1 896,738 + HER17_RS03980 0.71 -0.6 896,867 + HER17_RS03980 0.79 -1.0 896,868 - HER17_RS03980 0.79 +0.3 896,932 - HER17_RS03980 0.82 -0.9 896,932 - HER17_RS03980 0.82 -1.2 896,933 + HER17_RS03980 0.82 +0.5 896,933 + HER17_RS03980 0.82 -0.4 896,933 + HER17_RS03980 0.82 -0.9 896,933 + HER17_RS03980 0.82 -0.8 896,933 + HER17_RS03980 0.82 -0.0 896,933 + HER17_RS03980 0.82 -0.2 896,933 + HER17_RS03980 0.82 +0.5 896,933 + HER17_RS03980 0.82 -0.4 896,933 + HER17_RS03980 0.82 -0.2 896,933 + HER17_RS03980 0.82 +0.4 896,933 + HER17_RS03980 0.82 -0.4 896,933 + HER17_RS03980 0.82 -0.2 896,934 - HER17_RS03980 0.83 +0.1 896,934 - HER17_RS03980 0.83 -0.1 896,934 - HER17_RS03980 0.83 -0.6 896,934 - HER17_RS03980 0.83 +0.2 896,934 - HER17_RS03980 0.83 +0.8 896,934 - HER17_RS03980 0.83 +0.0 896,937 + HER17_RS03980 0.83 -0.1 896,937 + HER17_RS03980 0.83 +0.3 896,937 + HER17_RS03980 0.83 -1.0 896,938 - HER17_RS03980 0.83 +0.5 896,945 + HER17_RS03980 0.83 -1.9 897,012 + HER17_RS03980 0.87 -0.4 897,013 - HER17_RS03980 0.87 -0.7 897,018 + HER17_RS03980 0.87 -0.5 897,018 + HER17_RS03980 0.87 -0.8 897,018 + HER17_RS03980 0.87 -0.9 897,018 + HER17_RS03980 0.87 +0.2 897,019 - HER17_RS03980 0.87 +0.5 897,019 - HER17_RS03980 0.87 -1.0 897,019 - HER17_RS03980 0.87 -1.4 897,093 - -1.0 897,164 + +0.4 897,164 + -0.0 897,164 + -1.0 897,165 - -1.2 897,165 - -0.8 897,207 + -0.6 897,207 + -0.8 897,207 + +0.2 897,229 + +1.4 897,230 - +0.4 897,230 - -0.3 897,230 - +0.4 897,366 + +0.3 897,366 + -1.1 897,584 - -0.8 897,732 + HER17_RS03985 0.12 +0.0 897,733 - HER17_RS03985 0.12 -0.1 897,951 + HER17_RS03985 0.18 +0.3 897,951 + HER17_RS03985 0.18 -0.5 897,952 - HER17_RS03985 0.18 -0.2 897,952 - HER17_RS03985 0.18 +0.1 897,997 + HER17_RS03985 0.19 -0.2 898,005 + HER17_RS03985 0.19 +0.6 898,005 + HER17_RS03985 0.19 -0.5 898,015 + HER17_RS03985 0.19 +0.4 898,016 - HER17_RS03985 0.19 -0.1 898,016 - HER17_RS03985 0.19 -0.2 898,018 + HER17_RS03985 0.20 -1.0 898,019 - HER17_RS03985 0.20 -0.6 898,019 - HER17_RS03985 0.20 -0.1 898,153 - HER17_RS03985 0.23 -0.4 898,221 + HER17_RS03985 0.25 -0.4 898,222 - HER17_RS03985 0.25 +0.2
Or see this region's nucleotide sequence