Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS02875

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS02870 and HER17_RS02875 overlap by 4 nucleotidesHER17_RS02875 and HER17_RS02880 overlap by 1 nucleotidesHER17_RS02880 and HER17_RS02885 overlap by 20 nucleotides HER17_RS02870: HER17_RS02870 - isoleucine--tRNA ligase, at 644,679 to 647,492 _RS02870 HER17_RS02875: HER17_RS02875 - signal peptidase II, at 647,489 to 648,004 _RS02875 HER17_RS02880: HER17_RS02880 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 648,004 to 648,477 _RS02880 HER17_RS02885: HER17_RS02885 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 648,458 to 649,408 _RS02885 Position (kb) 647 648 649Strain fitness (log2 ratio) -1 0 1at 647.974 kb on + strandat 648.024 kb on + strandat 648.024 kb on + strandat 648.291 kb on + strand, within HER17_RS02880at 648.297 kb on + strand, within HER17_RS02880at 648.297 kb on + strand, within HER17_RS02880at 648.327 kb on + strand, within HER17_RS02880

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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647,974 + +0.3
648,024 + +0.3
648,024 + -0.6
648,291 + HER17_RS02880 0.61 -0.4
648,297 + HER17_RS02880 0.62 +0.3
648,297 + HER17_RS02880 0.62 +0.2
648,327 + HER17_RS02880 0.68 -0.6

Or see this region's nucleotide sequence