Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00710 and HER17_RS00715 are separated by 299 nucleotides HER17_RS00715 and HER17_RS00720 are separated by 76 nucleotides
HER17_RS00710: HER17_RS00710 - SWIM zinc finger domain-containing protein, at 165,712 to 167,784
_RS00710
HER17_RS00715: HER17_RS00715 - sugar transporter, at 168,084 to 169,271
_RS00715
HER17_RS00720: HER17_RS00720 - CDF family cation-efflux transporter FieF, at 169,348 to 170,250
_RS00720
Position (kb) 168
169
170 Strain fitness (log2 ratio) -2
-1
0
1
2 at 167.129 kb on + strand, within HER17_RS00710 at 167.129 kb on + strand, within HER17_RS00710 at 167.129 kb on + strand, within HER17_RS00710 at 167.130 kb on - strand, within HER17_RS00710 at 167.130 kb on - strand, within HER17_RS00710 at 167.212 kb on + strand, within HER17_RS00710 at 167.212 kb on + strand, within HER17_RS00710 at 167.212 kb on + strand, within HER17_RS00710 at 167.212 kb on + strand, within HER17_RS00710 at 167.212 kb on + strand, within HER17_RS00710 at 167.212 kb on + strand, within HER17_RS00710 at 167.252 kb on + strand, within HER17_RS00710 at 167.253 kb on - strand, within HER17_RS00710 at 167.253 kb on - strand, within HER17_RS00710 at 167.294 kb on + strand, within HER17_RS00710 at 167.295 kb on - strand, within HER17_RS00710 at 167.347 kb on + strand, within HER17_RS00710 at 167.347 kb on + strand, within HER17_RS00710 at 167.348 kb on - strand, within HER17_RS00710 at 167.348 kb on - strand, within HER17_RS00710 at 167.436 kb on + strand, within HER17_RS00710 at 167.437 kb on - strand, within HER17_RS00710 at 167.437 kb on - strand, within HER17_RS00710 at 167.445 kb on + strand, within HER17_RS00710 at 167.457 kb on - strand, within HER17_RS00710 at 167.478 kb on + strand, within HER17_RS00710 at 167.576 kb on + strand, within HER17_RS00710 at 167.600 kb on + strand at 167.666 kb on - strand at 167.669 kb on + strand at 167.810 kb on + strand at 167.811 kb on - strand at 167.821 kb on + strand at 167.821 kb on + strand at 167.822 kb on - strand at 167.822 kb on - strand at 167.829 kb on - strand at 167.829 kb on - strand at 167.865 kb on - strand at 167.871 kb on + strand at 167.871 kb on + strand at 167.871 kb on + strand at 167.872 kb on - strand at 167.872 kb on - strand at 167.876 kb on + strand at 167.876 kb on + strand at 167.876 kb on + strand at 167.876 kb on + strand at 167.876 kb on + strand at 167.876 kb on + strand at 167.877 kb on - strand at 167.913 kb on - strand at 167.913 kb on - strand at 167.998 kb on - strand at 167.998 kb on - strand at 168.008 kb on + strand at 168.008 kb on + strand at 168.081 kb on - strand at 168.152 kb on + strand at 168.191 kb on + strand at 168.247 kb on - strand, within HER17_RS00715 at 168.247 kb on - strand, within HER17_RS00715 at 168.247 kb on - strand, within HER17_RS00715 at 168.247 kb on - strand, within HER17_RS00715 at 168.332 kb on + strand, within HER17_RS00715 at 168.378 kb on + strand, within HER17_RS00715 at 168.379 kb on - strand, within HER17_RS00715 at 168.493 kb on + strand, within HER17_RS00715 at 168.494 kb on - strand, within HER17_RS00715 at 168.532 kb on + strand, within HER17_RS00715 at 168.533 kb on - strand, within HER17_RS00715 at 168.565 kb on - strand, within HER17_RS00715 at 168.618 kb on - strand, within HER17_RS00715 at 168.659 kb on + strand, within HER17_RS00715 at 168.659 kb on + strand, within HER17_RS00715 at 168.696 kb on - strand, within HER17_RS00715 at 168.720 kb on + strand, within HER17_RS00715 at 168.755 kb on + strand, within HER17_RS00715 at 168.768 kb on + strand, within HER17_RS00715 at 168.768 kb on + strand, within HER17_RS00715 at 168.769 kb on - strand, within HER17_RS00715 at 168.769 kb on - strand, within HER17_RS00715 at 168.769 kb on - strand, within HER17_RS00715 at 168.769 kb on - strand, within HER17_RS00715 at 168.769 kb on - strand, within HER17_RS00715 at 168.770 kb on + strand, within HER17_RS00715 at 168.771 kb on - strand, within HER17_RS00715 at 168.771 kb on - strand, within HER17_RS00715 at 168.771 kb on - strand, within HER17_RS00715 at 168.892 kb on - strand, within HER17_RS00715 at 168.892 kb on - strand, within HER17_RS00715 at 168.992 kb on + strand, within HER17_RS00715 at 168.993 kb on - strand, within HER17_RS00715 at 168.993 kb on - strand, within HER17_RS00715 at 169.089 kb on + strand, within HER17_RS00715 at 169.089 kb on + strand, within HER17_RS00715 at 169.101 kb on + strand, within HER17_RS00715 at 169.103 kb on + strand, within HER17_RS00715 at 169.104 kb on - strand, within HER17_RS00715 at 169.217 kb on + strand at 169.218 kb on - strand at 169.218 kb on - strand at 169.292 kb on + strand at 169.293 kb on - strand at 169.296 kb on + strand at 169.296 kb on + strand at 169.296 kb on + strand at 169.296 kb on + strand at 169.296 kb on + strand at 169.296 kb on + strand at 169.297 kb on - strand at 169.301 kb on + strand at 169.301 kb on + strand at 169.301 kb on + strand at 169.301 kb on + strand at 169.301 kb on + strand at 169.301 kb on + strand at 169.301 kb on + strand at 169.302 kb on - strand at 169.302 kb on - strand at 169.302 kb on - strand at 169.302 kb on - strand at 169.302 kb on - strand at 169.302 kb on - strand at 169.305 kb on + strand at 169.305 kb on + strand at 169.305 kb on + strand at 169.305 kb on + strand at 169.305 kb on + strand at 169.305 kb on + strand at 169.305 kb on + strand at 169.306 kb on - strand at 169.306 kb on - strand at 169.306 kb on - strand at 169.306 kb on - strand at 169.306 kb on - strand at 169.306 kb on - strand at 169.306 kb on - strand at 169.306 kb on - strand at 169.306 kb on - strand at 169.315 kb on + strand at 169.316 kb on + strand at 169.316 kb on + strand at 169.316 kb on + strand at 169.316 kb on + strand at 169.316 kb on + strand at 169.316 kb on + strand at 169.316 kb on + strand at 169.316 kb on + strand at 169.317 kb on - strand at 169.317 kb on - strand at 169.317 kb on - strand at 169.317 kb on - strand at 169.320 kb on + strand at 169.321 kb on - strand at 169.321 kb on - strand at 169.321 kb on - strand at 169.321 kb on - strand at 169.334 kb on + strand at 169.335 kb on - strand at 169.361 kb on - strand at 169.361 kb on - strand at 169.361 kb on - strand at 169.532 kb on - strand, within HER17_RS00720 at 169.608 kb on + strand, within HER17_RS00720 at 169.608 kb on + strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.609 kb on - strand, within HER17_RS00720 at 169.770 kb on + strand, within HER17_RS00720 at 169.771 kb on - strand, within HER17_RS00720 at 169.807 kb on + strand, within HER17_RS00720 at 169.808 kb on - strand, within HER17_RS00720 at 169.913 kb on - strand, within HER17_RS00720 at 169.914 kb on + strand, within HER17_RS00720 at 169.914 kb on + strand, within HER17_RS00720 at 169.914 kb on + strand, within HER17_RS00720 at 169.919 kb on + strand, within HER17_RS00720 at 169.919 kb on + strand, within HER17_RS00720 at 169.919 kb on + strand, within HER17_RS00720 at 169.920 kb on - strand, within HER17_RS00720 at 169.920 kb on - strand, within HER17_RS00720 at 169.922 kb on - strand, within HER17_RS00720 at 169.924 kb on - strand, within HER17_RS00720 at 170.053 kb on - strand, within HER17_RS00720 at 170.159 kb on + strand, within HER17_RS00720 at 170.159 kb on + strand, within HER17_RS00720 at 170.187 kb on + strand at 170.187 kb on + strand at 170.188 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 167,129 + HER17_RS00710 0.68 -0.4 167,129 + HER17_RS00710 0.68 +0.2 167,129 + HER17_RS00710 0.68 -0.4 167,130 - HER17_RS00710 0.68 +0.2 167,130 - HER17_RS00710 0.68 -0.4 167,212 + HER17_RS00710 0.72 +0.3 167,212 + HER17_RS00710 0.72 -0.8 167,212 + HER17_RS00710 0.72 -0.3 167,212 + HER17_RS00710 0.72 +0.2 167,212 + HER17_RS00710 0.72 -0.3 167,212 + HER17_RS00710 0.72 -1.5 167,252 + HER17_RS00710 0.74 -1.0 167,253 - HER17_RS00710 0.74 -0.4 167,253 - HER17_RS00710 0.74 +0.6 167,294 + HER17_RS00710 0.76 +0.6 167,295 - HER17_RS00710 0.76 +1.0 167,347 + HER17_RS00710 0.79 +0.4 167,347 + HER17_RS00710 0.79 +0.6 167,348 - HER17_RS00710 0.79 -0.3 167,348 - HER17_RS00710 0.79 +0.2 167,436 + HER17_RS00710 0.83 -0.4 167,437 - HER17_RS00710 0.83 +0.1 167,437 - HER17_RS00710 0.83 -0.7 167,445 + HER17_RS00710 0.84 -0.2 167,457 - HER17_RS00710 0.84 +0.3 167,478 + HER17_RS00710 0.85 +0.0 167,576 + HER17_RS00710 0.90 +0.6 167,600 + -0.4 167,666 - -0.2 167,669 + -0.2 167,810 + -0.2 167,811 - +0.7 167,821 + -0.4 167,821 + +0.6 167,822 - -0.2 167,822 - +1.1 167,829 - -0.5 167,829 - +0.0 167,865 - +0.6 167,871 + -0.6 167,871 + -0.1 167,871 + +0.1 167,872 - +0.3 167,872 - -0.3 167,876 + +0.2 167,876 + +0.1 167,876 + -1.4 167,876 + +0.2 167,876 + -0.3 167,876 + +0.1 167,877 - +0.1 167,913 - -0.4 167,913 - -0.4 167,998 - -0.8 167,998 - -0.6 168,008 + +0.0 168,008 + -0.1 168,081 - +1.3 168,152 + +0.4 168,191 + -0.3 168,247 - HER17_RS00715 0.14 -0.6 168,247 - HER17_RS00715 0.14 -0.3 168,247 - HER17_RS00715 0.14 -0.0 168,247 - HER17_RS00715 0.14 -0.9 168,332 + HER17_RS00715 0.21 +0.9 168,378 + HER17_RS00715 0.25 -0.7 168,379 - HER17_RS00715 0.25 -0.4 168,493 + HER17_RS00715 0.34 +0.5 168,494 - HER17_RS00715 0.35 +0.6 168,532 + HER17_RS00715 0.38 +0.4 168,533 - HER17_RS00715 0.38 +0.3 168,565 - HER17_RS00715 0.40 -0.3 168,618 - HER17_RS00715 0.45 +0.3 168,659 + HER17_RS00715 0.48 -0.4 168,659 + HER17_RS00715 0.48 +0.5 168,696 - HER17_RS00715 0.52 +1.8 168,720 + HER17_RS00715 0.54 +0.4 168,755 + HER17_RS00715 0.56 -0.8 168,768 + HER17_RS00715 0.58 +0.5 168,768 + HER17_RS00715 0.58 +0.5 168,769 - HER17_RS00715 0.58 +0.7 168,769 - HER17_RS00715 0.58 -0.6 168,769 - HER17_RS00715 0.58 +0.4 168,769 - HER17_RS00715 0.58 -0.8 168,769 - HER17_RS00715 0.58 -0.3 168,770 + HER17_RS00715 0.58 -0.7 168,771 - HER17_RS00715 0.58 +0.0 168,771 - HER17_RS00715 0.58 -1.8 168,771 - HER17_RS00715 0.58 -0.6 168,892 - HER17_RS00715 0.68 +1.0 168,892 - HER17_RS00715 0.68 +1.2 168,992 + HER17_RS00715 0.76 -0.4 168,993 - HER17_RS00715 0.77 -0.3 168,993 - HER17_RS00715 0.77 +0.3 169,089 + HER17_RS00715 0.85 +0.3 169,089 + HER17_RS00715 0.85 -1.1 169,101 + HER17_RS00715 0.86 -0.6 169,103 + HER17_RS00715 0.86 -1.1 169,104 - HER17_RS00715 0.86 +0.2 169,217 + +0.2 169,218 - +0.2 169,218 - -0.0 169,292 + +0.2 169,293 - +0.1 169,296 + -0.6 169,296 + -1.0 169,296 + +0.3 169,296 + -0.4 169,296 + +0.5 169,296 + +0.4 169,297 - -0.0 169,301 + +0.6 169,301 + -0.2 169,301 + -0.3 169,301 + +0.7 169,301 + +0.6 169,301 + +0.5 169,301 + +0.3 169,302 - -0.4 169,302 - -0.0 169,302 - -1.3 169,302 - +0.1 169,302 - +2.0 169,302 - +0.5 169,305 + +0.3 169,305 + +0.3 169,305 + -0.0 169,305 + +0.8 169,305 + -0.2 169,305 + -0.2 169,305 + +0.1 169,306 - +0.2 169,306 - +0.2 169,306 - +0.3 169,306 - -0.2 169,306 - +0.5 169,306 - -0.6 169,306 - +0.2 169,306 - +0.4 169,306 - +0.4 169,315 + +0.4 169,316 + +0.0 169,316 + -0.8 169,316 + +0.2 169,316 + -0.2 169,316 + +0.6 169,316 + +0.3 169,316 + -0.0 169,316 + +0.6 169,317 - +0.3 169,317 - -0.4 169,317 - -0.1 169,317 - +0.5 169,320 + +0.6 169,321 - -0.4 169,321 - +0.5 169,321 - -0.5 169,321 - +0.2 169,334 + +0.7 169,335 - -0.7 169,361 - -0.5 169,361 - +1.1 169,361 - +0.8 169,532 - HER17_RS00720 0.20 +0.1 169,608 + HER17_RS00720 0.29 +0.2 169,608 + HER17_RS00720 0.29 -0.2 169,609 - HER17_RS00720 0.29 -0.2 169,609 - HER17_RS00720 0.29 +0.2 169,609 - HER17_RS00720 0.29 +0.6 169,609 - HER17_RS00720 0.29 +1.0 169,609 - HER17_RS00720 0.29 -0.2 169,770 + HER17_RS00720 0.47 +0.2 169,771 - HER17_RS00720 0.47 -0.0 169,807 + HER17_RS00720 0.51 -0.3 169,808 - HER17_RS00720 0.51 +0.3 169,913 - HER17_RS00720 0.63 +0.3 169,914 + HER17_RS00720 0.63 +0.1 169,914 + HER17_RS00720 0.63 -1.2 169,914 + HER17_RS00720 0.63 +0.6 169,919 + HER17_RS00720 0.63 +0.4 169,919 + HER17_RS00720 0.63 +1.0 169,919 + HER17_RS00720 0.63 +0.2 169,920 - HER17_RS00720 0.63 +0.8 169,920 - HER17_RS00720 0.63 -0.7 169,922 - HER17_RS00720 0.64 +0.7 169,924 - HER17_RS00720 0.64 -1.9 170,053 - HER17_RS00720 0.78 -0.3 170,159 + HER17_RS00720 0.90 +0.7 170,159 + HER17_RS00720 0.90 +0.0 170,187 + +0.4 170,187 + +0.5 170,188 - +0.5
Or see this region's nucleotide sequence