Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00635 and HER17_RS00640 are separated by 13 nucleotides HER17_RS00640 and HER17_RS00645 are separated by 310 nucleotides HER17_RS00645 and HER17_RS00650 are separated by 10 nucleotides
HER17_RS00635: HER17_RS00635 - AEC family transporter, at 146,638 to 147,594
_RS00635
HER17_RS00640: HER17_RS00640 - hypothetical protein, at 147,608 to 147,904
_RS00640
HER17_RS00645: HER17_RS00645 - tRNA (cytidine(34)-2'-O)-methyltransferase, at 148,215 to 148,679
_RS00645
HER17_RS00650: HER17_RS00650 - DUF3142 domain-containing protein, at 148,690 to 149,490
_RS00650
Position (kb) 147
148 Strain fitness (log2 ratio) -2
-1
0
1
2 at 146.623 kb on + strand at 146.649 kb on + strand at 146.649 kb on + strand at 146.650 kb on - strand at 146.701 kb on - strand at 146.714 kb on - strand at 146.715 kb on + strand at 146.715 kb on + strand at 146.716 kb on - strand at 146.733 kb on + strand at 146.734 kb on - strand, within HER17_RS00635 at 146.734 kb on - strand, within HER17_RS00635 at 147.003 kb on + strand, within HER17_RS00635 at 147.066 kb on + strand, within HER17_RS00635 at 147.066 kb on + strand, within HER17_RS00635 at 147.136 kb on - strand, within HER17_RS00635 at 147.197 kb on + strand, within HER17_RS00635 at 147.351 kb on + strand, within HER17_RS00635 at 147.351 kb on + strand, within HER17_RS00635 at 147.369 kb on - strand, within HER17_RS00635 at 147.472 kb on + strand, within HER17_RS00635 at 147.473 kb on - strand, within HER17_RS00635 at 147.473 kb on - strand, within HER17_RS00635 at 147.473 kb on - strand, within HER17_RS00635 at 147.591 kb on - strand at 147.592 kb on + strand at 147.592 kb on + strand at 147.593 kb on - strand at 147.622 kb on + strand at 147.622 kb on + strand at 147.622 kb on + strand at 147.623 kb on - strand at 147.623 kb on - strand at 147.671 kb on + strand, within HER17_RS00640 at 147.672 kb on - strand, within HER17_RS00640 at 147.672 kb on - strand, within HER17_RS00640 at 147.725 kb on - strand, within HER17_RS00640 at 147.725 kb on - strand, within HER17_RS00640 at 147.763 kb on + strand, within HER17_RS00640 at 147.764 kb on - strand, within HER17_RS00640 at 147.877 kb on - strand at 147.877 kb on - strand at 147.885 kb on - strand at 147.892 kb on + strand at 147.892 kb on + strand at 147.893 kb on - strand at 147.906 kb on - strand at 147.906 kb on - strand at 147.937 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 147.973 kb on - strand at 148.026 kb on + strand at 148.026 kb on + strand at 148.048 kb on + strand at 148.092 kb on + strand at 148.123 kb on + strand at 148.175 kb on - strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.176 kb on + strand at 148.177 kb on - strand at 148.210 kb on - strand at 148.233 kb on + strand at 148.233 kb on + strand at 148.234 kb on - strand at 148.234 kb on - strand at 148.234 kb on - strand at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.266 kb on - strand, within HER17_RS00645 at 148.268 kb on + strand, within HER17_RS00645 at 148.295 kb on + strand, within HER17_RS00645 at 148.295 kb on + strand, within HER17_RS00645 at 148.365 kb on + strand, within HER17_RS00645 at 148.394 kb on + strand, within HER17_RS00645 at 148.395 kb on - strand, within HER17_RS00645 at 148.448 kb on + strand, within HER17_RS00645 at 148.485 kb on + strand, within HER17_RS00645 at 148.485 kb on + strand, within HER17_RS00645 at 148.486 kb on - strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.501 kb on + strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.502 kb on - strand, within HER17_RS00645 at 148.543 kb on + strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.544 kb on - strand, within HER17_RS00645 at 148.547 kb on + strand, within HER17_RS00645 at 148.547 kb on + strand, within HER17_RS00645 at 148.595 kb on + strand, within HER17_RS00645 at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.634 kb on + strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.635 kb on - strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.638 kb on + strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.639 kb on - strand at 148.677 kb on + strand at 148.677 kb on + strand at 148.678 kb on - strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.681 kb on + strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.682 kb on - strand at 148.691 kb on + strand at 148.691 kb on + strand at 148.757 kb on + strand at 148.757 kb on + strand at 148.758 kb on - strand at 148.758 kb on - strand at 148.813 kb on + strand, within HER17_RS00650 at 148.859 kb on + strand, within HER17_RS00650 at 148.859 kb on + strand, within HER17_RS00650 at 148.860 kb on - strand, within HER17_RS00650 at 148.868 kb on + strand, within HER17_RS00650 at 148.878 kb on + strand, within HER17_RS00650 at 148.878 kb on + strand, within HER17_RS00650 at 148.879 kb on - strand, within HER17_RS00650 at 148.879 kb on - strand, within HER17_RS00650 at 148.895 kb on + strand, within HER17_RS00650
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 146,623 + -0.5 146,649 + -0.5 146,649 + -1.0 146,650 - -1.1 146,701 - -1.4 146,714 - +0.9 146,715 + -0.3 146,715 + -0.5 146,716 - -1.0 146,733 + +1.5 146,734 - HER17_RS00635 0.10 -0.2 146,734 - HER17_RS00635 0.10 +1.2 147,003 + HER17_RS00635 0.38 +0.1 147,066 + HER17_RS00635 0.45 -0.3 147,066 + HER17_RS00635 0.45 -0.2 147,136 - HER17_RS00635 0.52 -0.4 147,197 + HER17_RS00635 0.58 +0.2 147,351 + HER17_RS00635 0.75 -0.1 147,351 + HER17_RS00635 0.75 -0.1 147,369 - HER17_RS00635 0.76 +0.2 147,472 + HER17_RS00635 0.87 +0.1 147,473 - HER17_RS00635 0.87 +0.5 147,473 - HER17_RS00635 0.87 -0.1 147,473 - HER17_RS00635 0.87 +0.1 147,591 - -0.0 147,592 + -0.6 147,592 + -0.0 147,593 - +0.3 147,622 + +0.8 147,622 + +0.4 147,622 + +0.3 147,623 - -0.2 147,623 - +0.8 147,671 + HER17_RS00640 0.21 +0.3 147,672 - HER17_RS00640 0.22 +0.4 147,672 - HER17_RS00640 0.22 +0.9 147,725 - HER17_RS00640 0.39 -0.5 147,725 - HER17_RS00640 0.39 +0.9 147,763 + HER17_RS00640 0.52 -0.6 147,764 - HER17_RS00640 0.53 -0.4 147,877 - +0.4 147,877 - +0.2 147,885 - +1.1 147,892 + -0.4 147,892 + +0.5 147,893 - -0.7 147,906 - -0.2 147,906 - +0.2 147,937 - +0.0 147,973 - -0.2 147,973 - -0.2 147,973 - +0.4 147,973 - +0.1 148,026 + -0.4 148,026 + +0.0 148,048 + -1.2 148,092 + -0.9 148,123 + -0.4 148,175 - -0.0 148,176 + +0.8 148,176 + +0.4 148,176 + +0.2 148,176 + -0.8 148,177 - -0.3 148,210 - -0.0 148,233 + -0.1 148,233 + +0.3 148,234 - -0.1 148,234 - +0.4 148,234 - -2.7 148,266 - HER17_RS00645 0.11 +0.5 148,266 - HER17_RS00645 0.11 +0.3 148,266 - HER17_RS00645 0.11 +0.2 148,266 - HER17_RS00645 0.11 +0.9 148,268 + HER17_RS00645 0.11 -0.5 148,295 + HER17_RS00645 0.17 +0.1 148,295 + HER17_RS00645 0.17 +0.2 148,365 + HER17_RS00645 0.32 +0.2 148,394 + HER17_RS00645 0.38 -0.2 148,395 - HER17_RS00645 0.39 +1.1 148,448 + HER17_RS00645 0.50 -0.4 148,485 + HER17_RS00645 0.58 -0.3 148,485 + HER17_RS00645 0.58 +0.1 148,486 - HER17_RS00645 0.58 -0.9 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -0.5 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -1.1 148,501 + HER17_RS00645 0.62 -0.3 148,501 + HER17_RS00645 0.62 -0.1 148,501 + HER17_RS00645 0.62 +0.5 148,501 + HER17_RS00645 0.62 +0.1 148,501 + HER17_RS00645 0.62 -0.5 148,501 + HER17_RS00645 0.62 +0.3 148,501 + HER17_RS00645 0.62 -0.2 148,501 + HER17_RS00645 0.62 +0.1 148,501 + HER17_RS00645 0.62 +0.2 148,501 + HER17_RS00645 0.62 +0.3 148,502 - HER17_RS00645 0.62 +0.1 148,502 - HER17_RS00645 0.62 -0.1 148,502 - HER17_RS00645 0.62 +0.0 148,502 - HER17_RS00645 0.62 +0.2 148,502 - HER17_RS00645 0.62 -0.1 148,502 - HER17_RS00645 0.62 +0.5 148,502 - HER17_RS00645 0.62 +0.5 148,502 - HER17_RS00645 0.62 +1.1 148,502 - HER17_RS00645 0.62 +1.1 148,502 - HER17_RS00645 0.62 +1.2 148,543 + HER17_RS00645 0.71 -0.2 148,544 - HER17_RS00645 0.71 +0.0 148,544 - HER17_RS00645 0.71 -0.7 148,544 - HER17_RS00645 0.71 +0.2 148,544 - HER17_RS00645 0.71 +0.2 148,544 - HER17_RS00645 0.71 +0.7 148,547 + HER17_RS00645 0.71 -0.9 148,547 + HER17_RS00645 0.71 +0.0 148,595 + HER17_RS00645 0.82 +0.5 148,634 + -0.2 148,634 + +0.1 148,634 + -0.2 148,634 + -0.3 148,634 + +0.1 148,634 + +0.5 148,634 + -0.2 148,634 + -0.5 148,634 + -0.8 148,634 + +0.0 148,634 + +0.3 148,635 - +0.1 148,635 - -0.0 148,635 - +0.5 148,635 - +0.5 148,635 - -0.6 148,635 - +0.6 148,635 - -0.4 148,635 - -0.3 148,638 + +0.8 148,638 + -0.6 148,638 + -0.6 148,638 + +0.4 148,638 + -0.6 148,638 + +0.6 148,638 + +0.7 148,639 - +0.5 148,639 - +0.5 148,639 - -0.3 148,639 - +0.2 148,677 + +1.1 148,677 + -0.2 148,678 - -0.1 148,681 + +0.1 148,681 + +1.9 148,681 + -0.1 148,681 + -0.1 148,681 + +0.5 148,681 + -1.0 148,682 - +0.2 148,682 - -0.7 148,682 - +0.5 148,682 - -0.3 148,682 - +0.2 148,682 - +0.9 148,691 + +0.1 148,691 + +0.1 148,757 + -1.2 148,757 + +1.1 148,758 - +0.0 148,758 - -0.3 148,813 + HER17_RS00650 0.15 -0.6 148,859 + HER17_RS00650 0.21 -1.2 148,859 + HER17_RS00650 0.21 -0.5 148,860 - HER17_RS00650 0.21 +0.6 148,868 + HER17_RS00650 0.22 +0.5 148,878 + HER17_RS00650 0.23 +0.5 148,878 + HER17_RS00650 0.23 -0.4 148,879 - HER17_RS00650 0.24 -0.2 148,879 - HER17_RS00650 0.24 +0.1 148,895 + HER17_RS00650 0.26 +0.3
Or see this region's nucleotide sequence