Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00350 and HER17_RS00355 are separated by 992 nucleotides HER17_RS00355 and HER17_RS00360 are separated by 6 nucleotides
HER17_RS00350: HER17_RS00350 - cellulose biosynthesis protein BcsC, at 79,742 to 83,311
_RS00350
HER17_RS00355: HER17_RS00355 - cellulase, at 84,304 to 85,419
_RS00355
HER17_RS00360: HER17_RS00360 - cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB, at 85,426 to 87,753
_RS00360
Position (kb) 84
85
86 Strain fitness (log2 ratio) -2
-1
0
1 at 83.311 kb on + strand at 83.312 kb on - strand at 83.312 kb on - strand at 83.312 kb on - strand at 83.321 kb on + strand at 83.321 kb on + strand at 83.322 kb on - strand at 83.432 kb on - strand at 83.488 kb on + strand at 83.489 kb on - strand at 83.505 kb on + strand at 83.506 kb on - strand at 83.509 kb on + strand at 83.509 kb on + strand at 83.510 kb on - strand at 83.578 kb on + strand at 83.578 kb on + strand at 83.579 kb on - strand at 83.579 kb on - strand at 83.582 kb on + strand at 83.582 kb on + strand at 83.583 kb on - strand at 83.588 kb on + strand at 83.589 kb on - strand at 83.600 kb on + strand at 83.600 kb on + strand at 83.601 kb on - strand at 83.601 kb on - strand at 83.655 kb on - strand at 83.655 kb on - strand at 83.726 kb on - strand at 83.748 kb on + strand at 83.748 kb on + strand at 83.749 kb on - strand at 83.749 kb on - strand at 83.762 kb on - strand at 83.813 kb on - strand at 83.849 kb on + strand at 83.850 kb on - strand at 83.932 kb on - strand at 83.944 kb on + strand at 83.944 kb on + strand at 83.945 kb on - strand at 83.949 kb on - strand at 83.949 kb on - strand at 83.966 kb on + strand at 84.002 kb on + strand at 84.002 kb on + strand at 84.003 kb on - strand at 84.021 kb on + strand at 84.108 kb on - strand at 84.133 kb on + strand at 84.133 kb on + strand at 84.134 kb on - strand at 84.145 kb on + strand at 84.145 kb on + strand at 84.160 kb on - strand at 84.419 kb on + strand, within HER17_RS00355 at 84.420 kb on - strand, within HER17_RS00355 at 84.420 kb on - strand, within HER17_RS00355 at 84.491 kb on - strand, within HER17_RS00355 at 84.622 kb on + strand, within HER17_RS00355 at 84.622 kb on + strand, within HER17_RS00355 at 84.623 kb on - strand, within HER17_RS00355 at 84.689 kb on + strand, within HER17_RS00355 at 84.689 kb on + strand, within HER17_RS00355 at 84.689 kb on + strand, within HER17_RS00355 at 84.690 kb on - strand, within HER17_RS00355 at 84.690 kb on - strand, within HER17_RS00355 at 84.869 kb on + strand, within HER17_RS00355 at 84.870 kb on - strand, within HER17_RS00355 at 84.925 kb on + strand, within HER17_RS00355 at 84.926 kb on - strand, within HER17_RS00355 at 84.926 kb on - strand, within HER17_RS00355 at 84.926 kb on - strand, within HER17_RS00355 at 85.045 kb on - strand, within HER17_RS00355 at 85.046 kb on + strand, within HER17_RS00355 at 85.046 kb on + strand, within HER17_RS00355 at 85.047 kb on - strand, within HER17_RS00355 at 85.232 kb on - strand, within HER17_RS00355 at 85.238 kb on + strand, within HER17_RS00355 at 85.239 kb on - strand, within HER17_RS00355 at 85.310 kb on + strand at 85.310 kb on + strand at 85.310 kb on + strand at 85.310 kb on + strand at 85.310 kb on + strand at 85.310 kb on + strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.311 kb on - strand at 85.322 kb on + strand at 85.322 kb on + strand at 85.322 kb on + strand at 85.322 kb on + strand at 85.500 kb on + strand at 85.500 kb on + strand at 85.500 kb on + strand at 85.501 kb on - strand at 85.519 kb on + strand at 85.563 kb on + strand at 85.563 kb on + strand at 85.563 kb on + strand at 85.564 kb on - strand at 85.592 kb on + strand at 85.592 kb on + strand at 85.593 kb on - strand at 85.593 kb on - strand at 85.593 kb on - strand at 85.593 kb on - strand at 85.595 kb on + strand at 85.595 kb on + strand at 85.596 kb on - strand at 85.596 kb on - strand at 85.617 kb on + strand at 85.617 kb on + strand at 85.617 kb on + strand at 85.618 kb on - strand at 85.618 kb on - strand at 85.704 kb on + strand, within HER17_RS00360 at 85.704 kb on + strand, within HER17_RS00360 at 85.704 kb on + strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.705 kb on - strand, within HER17_RS00360 at 85.983 kb on + strand, within HER17_RS00360 at 85.983 kb on + strand, within HER17_RS00360 at 85.983 kb on + strand, within HER17_RS00360 at 85.983 kb on + strand, within HER17_RS00360 at 85.984 kb on - strand, within HER17_RS00360 at 85.984 kb on - strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.987 kb on + strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 85.988 kb on - strand, within HER17_RS00360 at 86.214 kb on + strand, within HER17_RS00360 at 86.259 kb on + strand, within HER17_RS00360 at 86.260 kb on - strand, within HER17_RS00360 at 86.260 kb on - strand, within HER17_RS00360 at 86.261 kb on + strand, within HER17_RS00360 at 86.307 kb on - strand, within HER17_RS00360 at 86.307 kb on - strand, within HER17_RS00360 at 86.307 kb on - strand, within HER17_RS00360
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 83,311 + +0.5 83,312 - -0.2 83,312 - +0.3 83,312 - +0.6 83,321 + -0.1 83,321 + -0.4 83,322 - +0.2 83,432 - +0.6 83,488 + -1.5 83,489 - -0.4 83,505 + +1.4 83,506 - +0.1 83,509 + +1.0 83,509 + -0.1 83,510 - +0.1 83,578 + +0.3 83,578 + -0.4 83,579 - -0.1 83,579 - -0.1 83,582 + +0.4 83,582 + -1.2 83,583 - -0.8 83,588 + +1.3 83,589 - +0.7 83,600 + +0.5 83,600 + -0.7 83,601 - +0.1 83,601 - -0.1 83,655 - +0.1 83,655 - -1.0 83,726 - +0.6 83,748 + -0.4 83,748 + -0.6 83,749 - +0.7 83,749 - -0.4 83,762 - +0.1 83,813 - +0.7 83,849 + -0.1 83,850 - -1.4 83,932 - -0.5 83,944 + +0.4 83,944 + +0.8 83,945 - -0.0 83,949 - -0.5 83,949 - +1.0 83,966 + -0.3 84,002 + +0.1 84,002 + +0.4 84,003 - +0.3 84,021 + -0.1 84,108 - -0.8 84,133 + +0.0 84,133 + -0.0 84,134 - +1.1 84,145 + +0.3 84,145 + +0.5 84,160 - -0.1 84,419 + HER17_RS00355 0.10 +0.1 84,420 - HER17_RS00355 0.10 +0.5 84,420 - HER17_RS00355 0.10 +0.0 84,491 - HER17_RS00355 0.17 +0.9 84,622 + HER17_RS00355 0.28 +0.1 84,622 + HER17_RS00355 0.28 -0.0 84,623 - HER17_RS00355 0.29 +0.5 84,689 + HER17_RS00355 0.34 +0.8 84,689 + HER17_RS00355 0.34 +0.3 84,689 + HER17_RS00355 0.34 -0.3 84,690 - HER17_RS00355 0.35 -0.0 84,690 - HER17_RS00355 0.35 -0.1 84,869 + HER17_RS00355 0.51 +0.8 84,870 - HER17_RS00355 0.51 +0.1 84,925 + HER17_RS00355 0.56 -0.8 84,926 - HER17_RS00355 0.56 +1.0 84,926 - HER17_RS00355 0.56 -0.7 84,926 - HER17_RS00355 0.56 -0.0 85,045 - HER17_RS00355 0.66 -0.1 85,046 + HER17_RS00355 0.66 +0.0 85,046 + HER17_RS00355 0.66 -0.4 85,047 - HER17_RS00355 0.67 +1.0 85,232 - HER17_RS00355 0.83 +0.4 85,238 + HER17_RS00355 0.84 -0.2 85,239 - HER17_RS00355 0.84 -0.7 85,310 + +0.1 85,310 + -0.4 85,310 + -0.3 85,310 + +0.1 85,310 + -0.1 85,310 + -0.2 85,311 - -0.1 85,311 - +0.1 85,311 - +0.5 85,311 - -0.2 85,311 - -0.0 85,311 - +0.2 85,322 + +0.6 85,322 + -0.9 85,322 + +0.4 85,322 + -2.2 85,500 + -0.7 85,500 + -0.2 85,500 + +0.4 85,501 - +0.0 85,519 + +0.1 85,563 + -0.4 85,563 + +0.1 85,563 + +0.2 85,564 - -0.3 85,592 + +0.1 85,592 + +0.4 85,593 - +0.1 85,593 - -0.1 85,593 - +0.1 85,593 - +0.5 85,595 + +0.5 85,595 + +0.3 85,596 - +0.7 85,596 - +0.1 85,617 + -0.4 85,617 + +0.5 85,617 + -0.2 85,618 - +0.4 85,618 - +0.3 85,704 + HER17_RS00360 0.12 +0.2 85,704 + HER17_RS00360 0.12 +0.2 85,704 + HER17_RS00360 0.12 +0.0 85,705 - HER17_RS00360 0.12 -0.8 85,705 - HER17_RS00360 0.12 +0.3 85,705 - HER17_RS00360 0.12 -0.1 85,705 - HER17_RS00360 0.12 +0.2 85,705 - HER17_RS00360 0.12 +0.1 85,983 + HER17_RS00360 0.24 -0.7 85,983 + HER17_RS00360 0.24 +0.5 85,983 + HER17_RS00360 0.24 -0.9 85,983 + HER17_RS00360 0.24 -0.6 85,984 - HER17_RS00360 0.24 +0.6 85,984 - HER17_RS00360 0.24 -0.2 85,987 + HER17_RS00360 0.24 -1.1 85,987 + HER17_RS00360 0.24 +0.2 85,987 + HER17_RS00360 0.24 +0.6 85,987 + HER17_RS00360 0.24 -0.0 85,987 + HER17_RS00360 0.24 +0.1 85,988 - HER17_RS00360 0.24 +0.4 85,988 - HER17_RS00360 0.24 -0.3 85,988 - HER17_RS00360 0.24 -0.2 85,988 - HER17_RS00360 0.24 +1.2 85,988 - HER17_RS00360 0.24 +0.4 86,214 + HER17_RS00360 0.34 -0.5 86,259 + HER17_RS00360 0.36 -0.4 86,260 - HER17_RS00360 0.36 -0.1 86,260 - HER17_RS00360 0.36 -0.4 86,261 + HER17_RS00360 0.36 -0.6 86,307 - HER17_RS00360 0.38 -0.3 86,307 - HER17_RS00360 0.38 -1.1 86,307 - HER17_RS00360 0.38 -0.3
Or see this region's nucleotide sequence