Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00320

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS00315 and HER17_RS00320 are separated by 392 nucleotidesHER17_RS00320 and HER17_RS00325 are separated by 162 nucleotides HER17_RS00315: HER17_RS00315 - valine--pyruvate transaminase, at 69,727 to 70,977 _RS00315 HER17_RS00320: HER17_RS00320 - aldose 1-epimerase family protein, at 71,370 to 72,578 _RS00320 HER17_RS00325: HER17_RS00325 - O-acetylserine/cysteine exporter, at 72,741 to 73,652 _RS00325 Position (kb) 71 72 73Strain fitness (log2 ratio) -2 -1 0 1 2at 70.478 kb on + strand, within HER17_RS00315at 70.479 kb on - strand, within HER17_RS00315at 70.483 kb on - strand, within HER17_RS00315at 70.483 kb on - strand, within HER17_RS00315at 70.566 kb on + strand, within HER17_RS00315at 70.567 kb on - strand, within HER17_RS00315at 70.567 kb on - strand, within HER17_RS00315at 70.568 kb on + strand, within HER17_RS00315at 70.568 kb on + strand, within HER17_RS00315at 70.569 kb on - strand, within HER17_RS00315at 70.569 kb on - strand, within HER17_RS00315at 70.569 kb on - strand, within HER17_RS00315at 70.628 kb on + strand, within HER17_RS00315at 70.628 kb on + strand, within HER17_RS00315at 70.628 kb on + strand, within HER17_RS00315at 70.628 kb on + strand, within HER17_RS00315at 70.628 kb on + strand, within HER17_RS00315at 70.628 kb on + strand, within HER17_RS00315at 70.629 kb on - strand, within HER17_RS00315at 70.636 kb on - strand, within HER17_RS00315at 70.636 kb on - strand, within HER17_RS00315at 70.639 kb on + strand, within HER17_RS00315at 70.639 kb on + strand, within HER17_RS00315at 70.639 kb on + strand, within HER17_RS00315at 70.640 kb on - strand, within HER17_RS00315at 70.640 kb on - strand, within HER17_RS00315at 70.680 kb on + strand, within HER17_RS00315at 70.681 kb on - strand, within HER17_RS00315at 70.714 kb on - strand, within HER17_RS00315at 70.714 kb on - strand, within HER17_RS00315at 70.747 kb on - strand, within HER17_RS00315at 70.753 kb on - strand, within HER17_RS00315at 70.753 kb on - strand, within HER17_RS00315at 70.769 kb on + strand, within HER17_RS00315at 70.770 kb on - strand, within HER17_RS00315at 70.770 kb on - strand, within HER17_RS00315at 70.832 kb on + strand, within HER17_RS00315at 70.833 kb on - strand, within HER17_RS00315at 70.833 kb on - strand, within HER17_RS00315at 70.833 kb on - strand, within HER17_RS00315at 70.894 kb on - strandat 70.894 kb on - strandat 70.921 kb on + strandat 70.977 kb on + strandat 70.977 kb on + strandat 70.982 kb on + strandat 70.982 kb on + strandat 70.982 kb on + strandat 70.983 kb on - strandat 71.020 kb on - strandat 71.035 kb on - strandat 71.101 kb on + strandat 71.102 kb on - strandat 71.118 kb on + strandat 71.119 kb on - strandat 71.286 kb on + strandat 71.388 kb on - strandat 71.396 kb on + strandat 71.396 kb on + strandat 71.567 kb on + strand, within HER17_RS00320at 71.568 kb on - strand, within HER17_RS00320at 71.644 kb on + strand, within HER17_RS00320at 71.706 kb on - strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.820 kb on + strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.821 kb on - strand, within HER17_RS00320at 71.970 kb on + strand, within HER17_RS00320at 71.971 kb on - strand, within HER17_RS00320at 72.027 kb on + strand, within HER17_RS00320at 72.039 kb on + strand, within HER17_RS00320at 72.048 kb on - strand, within HER17_RS00320at 72.051 kb on + strand, within HER17_RS00320at 72.051 kb on + strand, within HER17_RS00320at 72.052 kb on - strand, within HER17_RS00320at 72.129 kb on - strand, within HER17_RS00320at 72.168 kb on + strand, within HER17_RS00320at 72.169 kb on - strand, within HER17_RS00320at 72.212 kb on + strand, within HER17_RS00320at 72.237 kb on - strand, within HER17_RS00320at 72.354 kb on + strand, within HER17_RS00320at 72.354 kb on + strand, within HER17_RS00320at 72.354 kb on + strand, within HER17_RS00320at 72.355 kb on - strand, within HER17_RS00320at 72.355 kb on - strand, within HER17_RS00320at 72.355 kb on - strand, within HER17_RS00320at 72.380 kb on + strand, within HER17_RS00320at 72.381 kb on - strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.384 kb on + strand, within HER17_RS00320at 72.385 kb on - strand, within HER17_RS00320at 72.385 kb on - strand, within HER17_RS00320at 72.433 kb on + strand, within HER17_RS00320at 72.468 kb on + strandat 72.468 kb on + strandat 72.468 kb on + strandat 72.482 kb on + strandat 72.482 kb on + strandat 72.539 kb on + strandat 72.539 kb on + strandat 72.540 kb on - strandat 72.577 kb on - strandat 72.583 kb on + strandat 72.583 kb on + strandat 72.583 kb on + strandat 72.583 kb on + strandat 72.584 kb on - strandat 72.584 kb on - strandat 72.584 kb on - strandat 72.584 kb on - strandat 72.637 kb on + strandat 72.637 kb on + strandat 72.652 kb on - strandat 72.660 kb on - strandat 72.660 kb on - strandat 72.679 kb on + strandat 72.680 kb on - strandat 72.690 kb on + strandat 72.690 kb on + strandat 72.691 kb on - strandat 72.710 kb on + strandat 72.710 kb on + strandat 72.710 kb on + strandat 72.711 kb on - strandat 72.721 kb on + strandat 72.721 kb on + strandat 72.721 kb on + strandat 72.784 kb on + strandat 72.842 kb on - strand, within HER17_RS00325at 72.853 kb on + strand, within HER17_RS00325at 72.905 kb on + strand, within HER17_RS00325at 72.905 kb on + strand, within HER17_RS00325at 72.905 kb on + strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.906 kb on - strand, within HER17_RS00325at 72.930 kb on + strand, within HER17_RS00325at 72.931 kb on - strand, within HER17_RS00325at 72.935 kb on + strand, within HER17_RS00325at 72.935 kb on + strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 72.936 kb on - strand, within HER17_RS00325at 73.015 kb on + strand, within HER17_RS00325at 73.016 kb on - strand, within HER17_RS00325at 73.019 kb on - strand, within HER17_RS00325at 73.173 kb on - strand, within HER17_RS00325at 73.235 kb on + strand, within HER17_RS00325at 73.344 kb on - strand, within HER17_RS00325at 73.344 kb on - strand, within HER17_RS00325at 73.361 kb on + strand, within HER17_RS00325at 73.361 kb on + strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.362 kb on - strand, within HER17_RS00325at 73.366 kb on + strand, within HER17_RS00325at 73.367 kb on - strand, within HER17_RS00325at 73.393 kb on + strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.394 kb on - strand, within HER17_RS00325at 73.404 kb on + strand, within HER17_RS00325at 73.404 kb on + strand, within HER17_RS00325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
70,478 + HER17_RS00315 0.60 -1.1
70,479 - HER17_RS00315 0.60 +0.4
70,483 - HER17_RS00315 0.60 +0.6
70,483 - HER17_RS00315 0.60 -1.0
70,566 + HER17_RS00315 0.67 -0.6
70,567 - HER17_RS00315 0.67 -0.0
70,567 - HER17_RS00315 0.67 +0.4
70,568 + HER17_RS00315 0.67 +0.1
70,568 + HER17_RS00315 0.67 +0.1
70,569 - HER17_RS00315 0.67 +0.1
70,569 - HER17_RS00315 0.67 -0.2
70,569 - HER17_RS00315 0.67 +1.2
70,628 + HER17_RS00315 0.72 +0.7
70,628 + HER17_RS00315 0.72 -0.4
70,628 + HER17_RS00315 0.72 -1.6
70,628 + HER17_RS00315 0.72 +0.4
70,628 + HER17_RS00315 0.72 -0.1
70,628 + HER17_RS00315 0.72 -0.3
70,629 - HER17_RS00315 0.72 -0.2
70,636 - HER17_RS00315 0.73 +0.3
70,636 - HER17_RS00315 0.73 -0.1
70,639 + HER17_RS00315 0.73 +0.1
70,639 + HER17_RS00315 0.73 +0.4
70,639 + HER17_RS00315 0.73 +0.3
70,640 - HER17_RS00315 0.73 +0.6
70,640 - HER17_RS00315 0.73 -0.1
70,680 + HER17_RS00315 0.76 +0.9
70,681 - HER17_RS00315 0.76 -0.2
70,714 - HER17_RS00315 0.79 +1.0
70,714 - HER17_RS00315 0.79 +0.2
70,747 - HER17_RS00315 0.82 -0.5
70,753 - HER17_RS00315 0.82 -0.5
70,753 - HER17_RS00315 0.82 -0.2
70,769 + HER17_RS00315 0.83 +0.2
70,770 - HER17_RS00315 0.83 -0.7
70,770 - HER17_RS00315 0.83 -1.7
70,832 + HER17_RS00315 0.88 +1.1
70,833 - HER17_RS00315 0.88 +0.7
70,833 - HER17_RS00315 0.88 +0.1
70,833 - HER17_RS00315 0.88 -1.1
70,894 - +0.3
70,894 - -0.1
70,921 + -0.3
70,977 + -2.1
70,977 + +0.1
70,982 + -0.0
70,982 + +0.3
70,982 + +0.2
70,983 - -0.1
71,020 - +0.3
71,035 - +0.2
71,101 + -0.1
71,102 - -0.4
71,118 + +0.0
71,119 - -0.3
71,286 + +0.0
71,388 - -1.3
71,396 + +0.1
71,396 + +0.1
71,567 + HER17_RS00320 0.16 +0.2
71,568 - HER17_RS00320 0.16 -0.3
71,644 + HER17_RS00320 0.23 -0.0
71,706 - HER17_RS00320 0.28 +0.4
71,820 + HER17_RS00320 0.37 +0.9
71,820 + HER17_RS00320 0.37 -0.2
71,820 + HER17_RS00320 0.37 -0.2
71,820 + HER17_RS00320 0.37 -0.2
71,820 + HER17_RS00320 0.37 -0.1
71,820 + HER17_RS00320 0.37 +0.1
71,821 - HER17_RS00320 0.37 +0.9
71,821 - HER17_RS00320 0.37 -0.3
71,821 - HER17_RS00320 0.37 +0.4
71,821 - HER17_RS00320 0.37 +0.5
71,821 - HER17_RS00320 0.37 -0.4
71,821 - HER17_RS00320 0.37 -0.2
71,970 + HER17_RS00320 0.50 +0.3
71,971 - HER17_RS00320 0.50 +0.3
72,027 + HER17_RS00320 0.54 +0.3
72,039 + HER17_RS00320 0.55 -0.5
72,048 - HER17_RS00320 0.56 -0.5
72,051 + HER17_RS00320 0.56 -0.1
72,051 + HER17_RS00320 0.56 -2.1
72,052 - HER17_RS00320 0.56 +0.9
72,129 - HER17_RS00320 0.63 -0.3
72,168 + HER17_RS00320 0.66 -0.5
72,169 - HER17_RS00320 0.66 +0.3
72,212 + HER17_RS00320 0.70 -0.2
72,237 - HER17_RS00320 0.72 +0.1
72,354 + HER17_RS00320 0.81 -0.3
72,354 + HER17_RS00320 0.81 -0.2
72,354 + HER17_RS00320 0.81 +0.7
72,355 - HER17_RS00320 0.81 +1.1
72,355 - HER17_RS00320 0.81 -0.1
72,355 - HER17_RS00320 0.81 -1.4
72,380 + HER17_RS00320 0.84 -0.4
72,381 - HER17_RS00320 0.84 +0.0
72,384 + HER17_RS00320 0.84 +0.5
72,384 + HER17_RS00320 0.84 -0.5
72,384 + HER17_RS00320 0.84 -0.2
72,384 + HER17_RS00320 0.84 +0.1
72,384 + HER17_RS00320 0.84 +0.2
72,384 + HER17_RS00320 0.84 -0.7
72,385 - HER17_RS00320 0.84 +0.3
72,385 - HER17_RS00320 0.84 +0.6
72,433 + HER17_RS00320 0.88 +0.6
72,468 + -0.0
72,468 + -0.0
72,468 + +0.1
72,482 + +0.1
72,482 + +0.2
72,539 + +0.5
72,539 + +0.8
72,540 - -0.3
72,577 - +0.1
72,583 + -1.9
72,583 + -0.3
72,583 + +2.1
72,583 + -0.4
72,584 - +0.1
72,584 - -0.3
72,584 - +0.2
72,584 - +1.3
72,637 + +1.3
72,637 + -0.0
72,652 - -1.5
72,660 - -0.4
72,660 - -0.5
72,679 + +0.5
72,680 - +0.4
72,690 + -0.2
72,690 + -0.3
72,691 - -0.1
72,710 + +0.6
72,710 + +0.9
72,710 + +0.2
72,711 - +0.1
72,721 + -0.7
72,721 + -0.7
72,721 + +1.3
72,784 + -0.0
72,842 - HER17_RS00325 0.11 -0.2
72,853 + HER17_RS00325 0.12 -0.2
72,905 + HER17_RS00325 0.18 +0.1
72,905 + HER17_RS00325 0.18 +0.2
72,905 + HER17_RS00325 0.18 -0.6
72,906 - HER17_RS00325 0.18 -0.5
72,906 - HER17_RS00325 0.18 -0.9
72,906 - HER17_RS00325 0.18 -2.2
72,906 - HER17_RS00325 0.18 -0.3
72,930 + HER17_RS00325 0.21 -0.8
72,931 - HER17_RS00325 0.21 +0.8
72,935 + HER17_RS00325 0.21 +0.7
72,935 + HER17_RS00325 0.21 -0.9
72,936 - HER17_RS00325 0.21 -0.2
72,936 - HER17_RS00325 0.21 -0.9
72,936 - HER17_RS00325 0.21 +1.7
73,015 + HER17_RS00325 0.30 -0.1
73,016 - HER17_RS00325 0.30 -0.5
73,019 - HER17_RS00325 0.30 -0.0
73,173 - HER17_RS00325 0.47 -0.4
73,235 + HER17_RS00325 0.54 +0.2
73,344 - HER17_RS00325 0.66 +0.5
73,344 - HER17_RS00325 0.66 +0.4
73,361 + HER17_RS00325 0.68 -0.4
73,361 + HER17_RS00325 0.68 -0.1
73,362 - HER17_RS00325 0.68 +0.0
73,362 - HER17_RS00325 0.68 +0.6
73,362 - HER17_RS00325 0.68 +0.2
73,366 + HER17_RS00325 0.69 -0.4
73,367 - HER17_RS00325 0.69 -0.4
73,393 + HER17_RS00325 0.71 -0.4
73,394 - HER17_RS00325 0.72 +0.3
73,394 - HER17_RS00325 0.72 +0.0
73,394 - HER17_RS00325 0.72 +0.1
73,394 - HER17_RS00325 0.72 -0.2
73,394 - HER17_RS00325 0.72 -0.3
73,404 + HER17_RS00325 0.73 +0.3
73,404 + HER17_RS00325 0.73 +0.4

Or see this region's nucleotide sequence