Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19050

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,289,435	+				+0.4
4,289,479	+				-0.0
4,289,479	+				-0.3
4,289,479	+				-0.3
4,289,488	-				-0.3
4,289,488	-				-0.2
4,289,597	+		HER17_RS19045	0.10	+0.5
4,289,597	+		HER17_RS19045	0.10	-0.1
4,289,598	-		HER17_RS19045	0.10	+0.9
4,289,598	-		HER17_RS19045	0.10	-0.0
4,289,598	-		HER17_RS19045	0.10	-0.6
4,289,629	+		HER17_RS19045	0.14	+0.5
4,289,630	-		HER17_RS19045	0.14	-1.0
4,289,659	-		HER17_RS19045	0.18	-0.5
4,289,709	-		HER17_RS19045	0.24	-0.3
4,289,754	+		HER17_RS19045	0.30	+0.1
4,289,755	-		HER17_RS19045	0.30	+0.8
4,289,755	-		HER17_RS19045	0.30	-0.4
4,289,755	-		HER17_RS19045	0.30	+0.1
4,289,755	-		HER17_RS19045	0.30	-0.1
4,289,759	+		HER17_RS19045	0.30	+0.3
4,289,772	-		HER17_RS19045	0.32	+0.5
4,289,781	+		HER17_RS19045	0.33	-0.3
4,289,781	+		HER17_RS19045	0.33	+0.4
4,289,781	+		HER17_RS19045	0.33	-0.1
4,289,782	-		HER17_RS19045	0.33	+0.1
4,289,782	-		HER17_RS19045	0.33	+1.0
4,289,784	+		HER17_RS19045	0.34	-0.0
4,289,785	-		HER17_RS19045	0.34	+0.0
4,289,822	-		HER17_RS19045	0.38	+0.3
4,289,873	+		HER17_RS19045	0.45	-0.5
4,289,873	+		HER17_RS19045	0.45	+0.1
4,289,874	-		HER17_RS19045	0.45	+0.3
4,289,874	-		HER17_RS19045	0.45	-1.7
4,289,928	+		HER17_RS19045	0.52	-0.0
4,289,929	-		HER17_RS19045	0.52	+0.6
4,289,965	+		HER17_RS19045	0.56	-0.0
4,289,965	+		HER17_RS19045	0.56	+1.2
4,289,966	-		HER17_RS19045	0.56	-0.9
4,289,966	-		HER17_RS19045	0.56	+0.6
4,289,966	-		HER17_RS19045	0.56	-0.6
4,289,995	+		HER17_RS19045	0.60	+1.6
4,289,995	+		HER17_RS19045	0.60	-0.1
4,289,995	+		HER17_RS19045	0.60	-0.1
4,289,996	-		HER17_RS19045	0.60	+0.6
4,289,997	+		HER17_RS19045	0.60	+0.1
4,289,997	+		HER17_RS19045	0.60	+0.3
4,289,997	+		HER17_RS19045	0.60	+0.7
4,289,997	+		HER17_RS19045	0.60	+0.0
4,289,997	+		HER17_RS19045	0.60	-0.6
4,289,998	-		HER17_RS19045	0.60	-0.1
4,289,998	-		HER17_RS19045	0.60	-1.6
4,289,998	-		HER17_RS19045	0.60	+1.1
4,289,998	-		HER17_RS19045	0.60	+0.3
4,289,998	-		HER17_RS19045	0.60	-0.6
4,289,998	-		HER17_RS19045	0.60	+0.3
4,289,998	-		HER17_RS19045	0.60	+0.9
4,289,998	-		HER17_RS19045	0.60	-0.2
4,289,998	-		HER17_RS19045	0.60	+0.1
4,290,097	+		HER17_RS19045	0.73	+0.4
4,290,097	+		HER17_RS19045	0.73	-0.5
4,290,099	+		HER17_RS19045	0.73	+0.8
4,290,099	+		HER17_RS19045	0.73	-0.6
4,290,099	+		HER17_RS19045	0.73	-0.8
4,290,100	-		HER17_RS19045	0.73	-0.6
4,290,100	-		HER17_RS19045	0.73	-0.4
4,290,100	-		HER17_RS19045	0.73	-0.1
4,290,100	-		HER17_RS19045	0.73	+0.9
4,290,100	-		HER17_RS19045	0.73	+0.7
4,290,138	+		HER17_RS19045	0.78	+0.2
4,290,138	+		HER17_RS19045	0.78	+0.0
4,290,138	+		HER17_RS19045	0.78	+0.4
4,290,139	-		HER17_RS19045	0.78	-0.1
4,290,139	-		HER17_RS19045	0.78	-0.1
4,290,139	-		HER17_RS19045	0.78	+0.6
4,290,252	+				-0.2
4,290,252	+				+1.2
4,290,252	+				-0.0
4,290,289	+				+0.4
4,290,335	+				+0.2
4,290,359	+				+0.3
4,290,360	-				-0.5
4,290,360	-				+0.0
4,290,360	-				-0.2
4,290,360	-				+0.4
4,290,378	-				-1.4
4,290,378	-				+0.1
4,290,378	-				-0.3
4,290,434	+				-0.1
4,290,435	-				+0.6
4,290,504	+		HER17_RS19050	0.40	+0.8
4,290,505	-		HER17_RS19050	0.41	+1.0
4,290,505	-		HER17_RS19050	0.41	+0.3
4,290,505	-		HER17_RS19050	0.41	+0.1
4,290,610	+				+0.2
4,290,611	-				-0.6
4,290,620	-				-0.1
4,290,620	-				+0.2
4,290,653	+				+0.3
4,290,653	+				-0.2
4,290,653	+				-0.7
4,290,653	+				+0.7
4,290,654	-				+0.1
4,290,654	-				+0.3
4,290,654	-				+0.0
4,290,654	-				-0.5
4,290,710	+				+0.0
4,290,711	-				+0.2
4,290,711	-				-0.6
4,290,799	+		HER17_RS19055	0.27	+1.2
4,290,799	+		HER17_RS19055	0.27	-3.0
4,290,800	-		HER17_RS19055	0.28	+1.0
4,290,802	+		HER17_RS19055	0.29	+0.3
4,290,809	+		HER17_RS19055	0.33	-0.7
4,290,809	+		HER17_RS19055	0.33	-0.6
4,290,810	-		HER17_RS19055	0.34	+0.1
4,290,890	+		HER17_RS19055	0.83	-0.4
4,290,890	+		HER17_RS19055	0.83	-0.9
4,290,890	+		HER17_RS19055	0.83	+1.3
4,290,890	+		HER17_RS19055	0.83	+0.2
4,290,896	+		HER17_RS19055	0.87	+0.5
4,290,897	-		HER17_RS19055	0.88	+0.2
4,290,897	-		HER17_RS19055	0.88	+0.5
4,290,899	-		HER17_RS19055	0.89	-0.6
4,290,916	+				-0.2
4,290,916	+				-0.0
4,290,916	+				+0.1
4,290,916	+				-0.7
4,290,917	-				-0.7
4,290,917	-				-0.2
4,290,917	-				+0.6
4,290,917	-				+0.3
4,290,917	-				+1.2
4,291,006	+				+1.0
4,291,006	+				-0.2
4,291,006	+				+0.6
4,291,006	+				+0.3
4,291,007	-				+0.1
4,291,018	+				+0.2
4,291,019	-				+0.5
4,291,022	+				+0.5
4,291,023	-				+0.5
4,291,052	+				+0.8
4,291,052	+				-0.8
4,291,053	-				+0.7
4,291,063	+				-1.5
4,291,064	-				+0.0
4,291,148	+		HER17_RS19060	0.14	-0.0
4,291,203	-		HER17_RS19060	0.23	-0.1
4,291,218	-		HER17_RS19060	0.26	+0.4
4,291,273	+		HER17_RS19060	0.35	+0.1
4,291,436	+		HER17_RS19060	0.61	-0.2
4,291,437	-		HER17_RS19060	0.62	+0.6
4,291,437	-		HER17_RS19060	0.62	+0.5
4,291,510	+		HER17_RS19060	0.74	-0.2
4,291,511	-		HER17_RS19060	0.74	-0.4
4,291,535	+		HER17_RS19060	0.78	+0.3