Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS18675 and HER17_RS18680 are separated by 11 nucleotides HER17_RS18680 and HER17_RS18685 are separated by 161 nucleotides
HER17_RS18675: HER17_RS18675 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 4,195,582 to 4,197,636
_RS18675
HER17_RS18680: HER17_RS18680 - 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG, at 4,197,648 to 4,198,787
_RS18680
HER17_RS18685: HER17_RS18685 - Gfo/Idh/MocA family oxidoreductase, at 4,198,949 to 4,199,947
_RS18685
Position (kb) 4197
4198
4199 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4196.806 kb on + strand, within HER17_RS18675 at 4196.807 kb on - strand, within HER17_RS18675 at 4196.807 kb on - strand, within HER17_RS18675 at 4196.879 kb on - strand, within HER17_RS18675 at 4196.891 kb on + strand, within HER17_RS18675 at 4196.892 kb on - strand, within HER17_RS18675 at 4196.991 kb on + strand, within HER17_RS18675 at 4196.992 kb on - strand, within HER17_RS18675 at 4197.003 kb on + strand, within HER17_RS18675 at 4197.021 kb on + strand, within HER17_RS18675 at 4197.022 kb on - strand, within HER17_RS18675 at 4197.034 kb on + strand, within HER17_RS18675 at 4197.121 kb on + strand, within HER17_RS18675 at 4197.122 kb on - strand, within HER17_RS18675 at 4197.156 kb on + strand, within HER17_RS18675 at 4197.156 kb on + strand, within HER17_RS18675 at 4197.156 kb on + strand, within HER17_RS18675 at 4197.156 kb on + strand, within HER17_RS18675 at 4197.157 kb on - strand, within HER17_RS18675 at 4197.165 kb on + strand, within HER17_RS18675 at 4197.165 kb on + strand, within HER17_RS18675 at 4197.165 kb on + strand, within HER17_RS18675 at 4197.223 kb on - strand, within HER17_RS18675 at 4197.230 kb on + strand, within HER17_RS18675 at 4197.230 kb on + strand, within HER17_RS18675 at 4197.230 kb on + strand, within HER17_RS18675 at 4197.231 kb on - strand, within HER17_RS18675 at 4197.231 kb on - strand, within HER17_RS18675 at 4197.231 kb on - strand, within HER17_RS18675 at 4197.231 kb on - strand, within HER17_RS18675 at 4197.231 kb on - strand, within HER17_RS18675 at 4197.231 kb on - strand, within HER17_RS18675 at 4197.231 kb on - strand, within HER17_RS18675 at 4197.265 kb on - strand, within HER17_RS18675 at 4197.265 kb on - strand, within HER17_RS18675 at 4197.291 kb on + strand, within HER17_RS18675 at 4197.291 kb on + strand, within HER17_RS18675 at 4197.291 kb on + strand, within HER17_RS18675 at 4197.292 kb on - strand, within HER17_RS18675 at 4197.292 kb on - strand, within HER17_RS18675 at 4197.292 kb on - strand, within HER17_RS18675 at 4197.297 kb on - strand, within HER17_RS18675 at 4197.299 kb on + strand, within HER17_RS18675 at 4197.299 kb on + strand, within HER17_RS18675 at 4197.299 kb on + strand, within HER17_RS18675 at 4197.353 kb on + strand, within HER17_RS18675 at 4197.407 kb on - strand, within HER17_RS18675 at 4197.414 kb on + strand, within HER17_RS18675 at 4197.414 kb on + strand, within HER17_RS18675 at 4197.415 kb on - strand, within HER17_RS18675 at 4197.415 kb on - strand, within HER17_RS18675 at 4197.483 kb on + strand at 4197.483 kb on + strand at 4197.483 kb on + strand at 4197.484 kb on - strand at 4197.484 kb on - strand at 4197.484 kb on - strand at 4197.510 kb on + strand at 4197.510 kb on + strand at 4197.511 kb on - strand at 4197.511 kb on - strand at 4197.511 kb on - strand at 4197.517 kb on + strand at 4197.517 kb on + strand at 4197.517 kb on + strand at 4197.517 kb on + strand at 4197.517 kb on + strand at 4197.518 kb on - strand at 4197.518 kb on - strand at 4197.518 kb on - strand at 4197.635 kb on - strand at 4197.639 kb on + strand at 4197.668 kb on + strand at 4197.748 kb on + strand at 4197.749 kb on - strand at 4197.753 kb on + strand at 4197.777 kb on + strand, within HER17_RS18680 at 4197.778 kb on - strand, within HER17_RS18680 at 4197.815 kb on + strand, within HER17_RS18680 at 4197.816 kb on - strand, within HER17_RS18680 at 4197.873 kb on - strand, within HER17_RS18680 at 4197.894 kb on - strand, within HER17_RS18680 at 4197.935 kb on + strand, within HER17_RS18680 at 4197.936 kb on - strand, within HER17_RS18680 at 4197.936 kb on - strand, within HER17_RS18680 at 4198.000 kb on + strand, within HER17_RS18680 at 4198.000 kb on + strand, within HER17_RS18680 at 4198.000 kb on + strand, within HER17_RS18680 at 4198.000 kb on + strand, within HER17_RS18680 at 4198.000 kb on + strand, within HER17_RS18680 at 4198.001 kb on - strand, within HER17_RS18680 at 4198.001 kb on - strand, within HER17_RS18680 at 4198.001 kb on - strand, within HER17_RS18680 at 4198.001 kb on - strand, within HER17_RS18680 at 4198.094 kb on + strand, within HER17_RS18680 at 4198.094 kb on + strand, within HER17_RS18680 at 4198.101 kb on + strand, within HER17_RS18680 at 4198.102 kb on - strand, within HER17_RS18680 at 4198.102 kb on - strand, within HER17_RS18680 at 4198.124 kb on + strand, within HER17_RS18680 at 4198.124 kb on + strand, within HER17_RS18680 at 4198.154 kb on + strand, within HER17_RS18680 at 4198.162 kb on + strand, within HER17_RS18680 at 4198.163 kb on - strand, within HER17_RS18680 at 4198.163 kb on - strand, within HER17_RS18680 at 4198.163 kb on - strand, within HER17_RS18680 at 4198.170 kb on - strand, within HER17_RS18680 at 4198.220 kb on + strand, within HER17_RS18680 at 4198.221 kb on - strand, within HER17_RS18680 at 4198.221 kb on - strand, within HER17_RS18680 at 4198.334 kb on + strand, within HER17_RS18680 at 4198.334 kb on + strand, within HER17_RS18680 at 4198.334 kb on + strand, within HER17_RS18680 at 4198.334 kb on + strand, within HER17_RS18680 at 4198.340 kb on + strand, within HER17_RS18680 at 4198.341 kb on - strand, within HER17_RS18680 at 4198.341 kb on - strand, within HER17_RS18680 at 4198.341 kb on - strand, within HER17_RS18680 at 4198.341 kb on - strand, within HER17_RS18680 at 4198.347 kb on - strand, within HER17_RS18680 at 4198.476 kb on + strand, within HER17_RS18680 at 4198.477 kb on - strand, within HER17_RS18680 at 4198.490 kb on + strand, within HER17_RS18680 at 4198.538 kb on + strand, within HER17_RS18680 at 4198.538 kb on + strand, within HER17_RS18680 at 4198.539 kb on - strand, within HER17_RS18680 at 4198.539 kb on - strand, within HER17_RS18680 at 4198.564 kb on + strand, within HER17_RS18680 at 4198.564 kb on + strand, within HER17_RS18680 at 4198.564 kb on + strand, within HER17_RS18680 at 4198.565 kb on - strand, within HER17_RS18680 at 4198.565 kb on - strand, within HER17_RS18680 at 4198.565 kb on - strand, within HER17_RS18680 at 4198.565 kb on - strand, within HER17_RS18680 at 4198.565 kb on - strand, within HER17_RS18680 at 4198.625 kb on + strand, within HER17_RS18680 at 4198.625 kb on + strand, within HER17_RS18680 at 4198.626 kb on - strand, within HER17_RS18680 at 4198.626 kb on - strand, within HER17_RS18680 at 4198.626 kb on - strand, within HER17_RS18680 at 4198.687 kb on + strand at 4198.687 kb on + strand at 4198.688 kb on - strand at 4198.688 kb on - strand at 4198.788 kb on + strand at 4198.821 kb on + strand at 4198.833 kb on + strand at 4198.844 kb on + strand at 4198.844 kb on + strand at 4198.845 kb on - strand at 4198.845 kb on - strand at 4198.845 kb on - strand at 4198.845 kb on - strand at 4198.904 kb on + strand at 4198.905 kb on - strand at 4198.913 kb on + strand at 4198.913 kb on + strand at 4198.913 kb on + strand at 4198.913 kb on + strand at 4198.932 kb on + strand at 4198.949 kb on - strand at 4198.968 kb on + strand at 4198.969 kb on - strand at 4198.969 kb on - strand at 4198.969 kb on - strand at 4198.975 kb on + strand at 4198.975 kb on + strand at 4199.084 kb on + strand, within HER17_RS18685 at 4199.084 kb on + strand, within HER17_RS18685 at 4199.085 kb on - strand, within HER17_RS18685 at 4199.085 kb on - strand, within HER17_RS18685 at 4199.085 kb on - strand, within HER17_RS18685 at 4199.150 kb on + strand, within HER17_RS18685 at 4199.151 kb on - strand, within HER17_RS18685 at 4199.151 kb on - strand, within HER17_RS18685 at 4199.269 kb on - strand, within HER17_RS18685 at 4199.295 kb on + strand, within HER17_RS18685 at 4199.377 kb on + strand, within HER17_RS18685 at 4199.378 kb on - strand, within HER17_RS18685 at 4199.393 kb on + strand, within HER17_RS18685 at 4199.393 kb on + strand, within HER17_RS18685 at 4199.393 kb on + strand, within HER17_RS18685 at 4199.394 kb on - strand, within HER17_RS18685 at 4199.402 kb on + strand, within HER17_RS18685 at 4199.403 kb on - strand, within HER17_RS18685 at 4199.423 kb on + strand, within HER17_RS18685 at 4199.423 kb on + strand, within HER17_RS18685 at 4199.495 kb on + strand, within HER17_RS18685 at 4199.495 kb on + strand, within HER17_RS18685 at 4199.495 kb on + strand, within HER17_RS18685 at 4199.495 kb on + strand, within HER17_RS18685 at 4199.495 kb on + strand, within HER17_RS18685 at 4199.495 kb on + strand, within HER17_RS18685 at 4199.496 kb on - strand, within HER17_RS18685 at 4199.496 kb on - strand, within HER17_RS18685 at 4199.604 kb on - strand, within HER17_RS18685 at 4199.717 kb on - strand, within HER17_RS18685 at 4199.721 kb on + strand, within HER17_RS18685 at 4199.722 kb on - strand, within HER17_RS18685 at 4199.773 kb on + strand, within HER17_RS18685 at 4199.773 kb on + strand, within HER17_RS18685 at 4199.773 kb on + strand, within HER17_RS18685 at 4199.773 kb on + strand, within HER17_RS18685
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,196,806 + HER17_RS18675 0.60 +0.2 4,196,807 - HER17_RS18675 0.60 -1.8 4,196,807 - HER17_RS18675 0.60 -0.1 4,196,879 - HER17_RS18675 0.63 -0.0 4,196,891 + HER17_RS18675 0.64 +0.3 4,196,892 - HER17_RS18675 0.64 +0.2 4,196,991 + HER17_RS18675 0.69 -0.7 4,196,992 - HER17_RS18675 0.69 -0.4 4,197,003 + HER17_RS18675 0.69 +0.4 4,197,021 + HER17_RS18675 0.70 +1.2 4,197,022 - HER17_RS18675 0.70 -0.1 4,197,034 + HER17_RS18675 0.71 +0.2 4,197,121 + HER17_RS18675 0.75 -0.2 4,197,122 - HER17_RS18675 0.75 -1.0 4,197,156 + HER17_RS18675 0.77 -0.2 4,197,156 + HER17_RS18675 0.77 +0.2 4,197,156 + HER17_RS18675 0.77 +0.0 4,197,156 + HER17_RS18675 0.77 +0.7 4,197,157 - HER17_RS18675 0.77 -0.6 4,197,165 + HER17_RS18675 0.77 +0.5 4,197,165 + HER17_RS18675 0.77 +1.1 4,197,165 + HER17_RS18675 0.77 -0.6 4,197,223 - HER17_RS18675 0.80 -0.3 4,197,230 + HER17_RS18675 0.80 +1.7 4,197,230 + HER17_RS18675 0.80 +0.0 4,197,230 + HER17_RS18675 0.80 +0.1 4,197,231 - HER17_RS18675 0.80 -0.4 4,197,231 - HER17_RS18675 0.80 +0.4 4,197,231 - HER17_RS18675 0.80 +0.2 4,197,231 - HER17_RS18675 0.80 +3.0 4,197,231 - HER17_RS18675 0.80 +1.2 4,197,231 - HER17_RS18675 0.80 +0.2 4,197,231 - HER17_RS18675 0.80 +0.4 4,197,265 - HER17_RS18675 0.82 -0.1 4,197,265 - HER17_RS18675 0.82 +1.0 4,197,291 + HER17_RS18675 0.83 +0.3 4,197,291 + HER17_RS18675 0.83 -0.5 4,197,291 + HER17_RS18675 0.83 +0.5 4,197,292 - HER17_RS18675 0.83 +0.5 4,197,292 - HER17_RS18675 0.83 -0.9 4,197,292 - HER17_RS18675 0.83 -0.5 4,197,297 - HER17_RS18675 0.83 +1.6 4,197,299 + HER17_RS18675 0.84 +1.0 4,197,299 + HER17_RS18675 0.84 -0.0 4,197,299 + HER17_RS18675 0.84 -0.9 4,197,353 + HER17_RS18675 0.86 -1.8 4,197,407 - HER17_RS18675 0.89 +0.4 4,197,414 + HER17_RS18675 0.89 -0.8 4,197,414 + HER17_RS18675 0.89 +0.0 4,197,415 - HER17_RS18675 0.89 -0.6 4,197,415 - HER17_RS18675 0.89 -0.1 4,197,483 + +0.3 4,197,483 + +0.0 4,197,483 + -0.6 4,197,484 - +0.1 4,197,484 - +1.2 4,197,484 - -0.1 4,197,510 + -1.0 4,197,510 + -1.5 4,197,511 - -0.3 4,197,511 - -0.0 4,197,511 - +1.3 4,197,517 + +0.4 4,197,517 + +0.3 4,197,517 + +0.2 4,197,517 + +0.6 4,197,517 + -0.3 4,197,518 - +0.2 4,197,518 - -0.4 4,197,518 - -0.9 4,197,635 - +0.6 4,197,639 + -0.2 4,197,668 + -1.5 4,197,748 + +0.9 4,197,749 - +0.0 4,197,753 + -2.5 4,197,777 + HER17_RS18680 0.11 -0.0 4,197,778 - HER17_RS18680 0.11 +0.2 4,197,815 + HER17_RS18680 0.15 +0.1 4,197,816 - HER17_RS18680 0.15 -0.2 4,197,873 - HER17_RS18680 0.20 +0.2 4,197,894 - HER17_RS18680 0.22 +1.3 4,197,935 + HER17_RS18680 0.25 -0.0 4,197,936 - HER17_RS18680 0.25 +1.2 4,197,936 - HER17_RS18680 0.25 +0.5 4,198,000 + HER17_RS18680 0.31 -1.4 4,198,000 + HER17_RS18680 0.31 -0.1 4,198,000 + HER17_RS18680 0.31 -0.6 4,198,000 + HER17_RS18680 0.31 +0.0 4,198,000 + HER17_RS18680 0.31 +0.1 4,198,001 - HER17_RS18680 0.31 -0.0 4,198,001 - HER17_RS18680 0.31 +1.2 4,198,001 - HER17_RS18680 0.31 +0.0 4,198,001 - HER17_RS18680 0.31 +0.3 4,198,094 + HER17_RS18680 0.39 +0.6 4,198,094 + HER17_RS18680 0.39 +0.5 4,198,101 + HER17_RS18680 0.40 +1.3 4,198,102 - HER17_RS18680 0.40 -0.3 4,198,102 - HER17_RS18680 0.40 +0.0 4,198,124 + HER17_RS18680 0.42 -0.6 4,198,124 + HER17_RS18680 0.42 +1.8 4,198,154 + HER17_RS18680 0.44 +0.2 4,198,162 + HER17_RS18680 0.45 +0.5 4,198,163 - HER17_RS18680 0.45 +0.9 4,198,163 - HER17_RS18680 0.45 +0.5 4,198,163 - HER17_RS18680 0.45 +1.1 4,198,170 - HER17_RS18680 0.46 +0.1 4,198,220 + HER17_RS18680 0.50 +0.2 4,198,221 - HER17_RS18680 0.50 +0.6 4,198,221 - HER17_RS18680 0.50 +1.7 4,198,334 + HER17_RS18680 0.60 -0.0 4,198,334 + HER17_RS18680 0.60 +0.0 4,198,334 + HER17_RS18680 0.60 -0.2 4,198,334 + HER17_RS18680 0.60 +0.5 4,198,340 + HER17_RS18680 0.61 +0.0 4,198,341 - HER17_RS18680 0.61 -0.3 4,198,341 - HER17_RS18680 0.61 +0.9 4,198,341 - HER17_RS18680 0.61 -0.1 4,198,341 - HER17_RS18680 0.61 +0.4 4,198,347 - HER17_RS18680 0.61 -1.2 4,198,476 + HER17_RS18680 0.73 +0.2 4,198,477 - HER17_RS18680 0.73 -1.8 4,198,490 + HER17_RS18680 0.74 -0.1 4,198,538 + HER17_RS18680 0.78 +0.2 4,198,538 + HER17_RS18680 0.78 +0.3 4,198,539 - HER17_RS18680 0.78 +0.3 4,198,539 - HER17_RS18680 0.78 -1.1 4,198,564 + HER17_RS18680 0.80 -2.2 4,198,564 + HER17_RS18680 0.80 +0.4 4,198,564 + HER17_RS18680 0.80 +1.9 4,198,565 - HER17_RS18680 0.80 -0.3 4,198,565 - HER17_RS18680 0.80 +0.3 4,198,565 - HER17_RS18680 0.80 +0.2 4,198,565 - HER17_RS18680 0.80 -1.2 4,198,565 - HER17_RS18680 0.80 +0.1 4,198,625 + HER17_RS18680 0.86 +0.2 4,198,625 + HER17_RS18680 0.86 -0.6 4,198,626 - HER17_RS18680 0.86 -0.1 4,198,626 - HER17_RS18680 0.86 +0.7 4,198,626 - HER17_RS18680 0.86 +0.3 4,198,687 + -0.5 4,198,687 + -0.2 4,198,688 - +1.2 4,198,688 - +1.4 4,198,788 + -0.0 4,198,821 + -0.7 4,198,833 + -0.1 4,198,844 + +0.4 4,198,844 + +1.2 4,198,845 - +0.0 4,198,845 - +0.6 4,198,845 - +0.3 4,198,845 - +0.1 4,198,904 + -0.6 4,198,905 - +0.7 4,198,913 + -0.3 4,198,913 + +0.3 4,198,913 + +0.3 4,198,913 + +0.5 4,198,932 + -2.0 4,198,949 - +0.4 4,198,968 + -0.2 4,198,969 - +0.2 4,198,969 - +0.2 4,198,969 - -0.1 4,198,975 + +0.3 4,198,975 + +0.0 4,199,084 + HER17_RS18685 0.14 -0.6 4,199,084 + HER17_RS18685 0.14 -0.1 4,199,085 - HER17_RS18685 0.14 +1.5 4,199,085 - HER17_RS18685 0.14 +0.0 4,199,085 - HER17_RS18685 0.14 +0.4 4,199,150 + HER17_RS18685 0.20 +1.0 4,199,151 - HER17_RS18685 0.20 +1.3 4,199,151 - HER17_RS18685 0.20 +1.3 4,199,269 - HER17_RS18685 0.32 +0.4 4,199,295 + HER17_RS18685 0.35 +0.0 4,199,377 + HER17_RS18685 0.43 +0.8 4,199,378 - HER17_RS18685 0.43 +0.2 4,199,393 + HER17_RS18685 0.44 +0.6 4,199,393 + HER17_RS18685 0.44 +0.5 4,199,393 + HER17_RS18685 0.44 +0.6 4,199,394 - HER17_RS18685 0.45 +1.3 4,199,402 + HER17_RS18685 0.45 +0.2 4,199,403 - HER17_RS18685 0.45 -0.4 4,199,423 + HER17_RS18685 0.47 -0.6 4,199,423 + HER17_RS18685 0.47 -0.6 4,199,495 + HER17_RS18685 0.55 +0.4 4,199,495 + HER17_RS18685 0.55 +0.4 4,199,495 + HER17_RS18685 0.55 -0.4 4,199,495 + HER17_RS18685 0.55 +0.1 4,199,495 + HER17_RS18685 0.55 +0.0 4,199,495 + HER17_RS18685 0.55 +0.3 4,199,496 - HER17_RS18685 0.55 -0.1 4,199,496 - HER17_RS18685 0.55 +0.4 4,199,604 - HER17_RS18685 0.66 +1.2 4,199,717 - HER17_RS18685 0.77 +1.1 4,199,721 + HER17_RS18685 0.77 +0.2 4,199,722 - HER17_RS18685 0.77 -0.7 4,199,773 + HER17_RS18685 0.82 +0.0 4,199,773 + HER17_RS18685 0.82 +0.1 4,199,773 + HER17_RS18685 0.82 -0.4 4,199,773 + HER17_RS18685 0.82 -1.2
Or see this region's nucleotide sequence