Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17120

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,852,659	-		HER17_RS17115	0.67	-1.8
3,852,659	-		HER17_RS17115	0.67	-0.3
3,852,666	+		HER17_RS17115	0.68	-0.8
3,852,666	+		HER17_RS17115	0.68	+0.4
3,852,667	-		HER17_RS17115	0.68	+0.3
3,852,670	+		HER17_RS17115	0.68	+0.6
3,852,670	+		HER17_RS17115	0.68	-0.3
3,852,670	+		HER17_RS17115	0.68	-0.4
3,852,671	-		HER17_RS17115	0.68	-0.3
3,852,671	-		HER17_RS17115	0.68	-1.6
3,852,671	-		HER17_RS17115	0.68	+1.0
3,852,671	-		HER17_RS17115	0.68	-0.2
3,852,673	-		HER17_RS17115	0.69	+0.7
3,852,724	+		HER17_RS17115	0.74	+0.3
3,852,725	-		HER17_RS17115	0.75	-0.1
3,852,725	-		HER17_RS17115	0.75	-1.2
3,852,729	+		HER17_RS17115	0.75	+0.4
3,852,729	+		HER17_RS17115	0.75	+0.6
3,852,729	+		HER17_RS17115	0.75	+0.7
3,852,729	+		HER17_RS17115	0.75	+0.9
3,852,729	+		HER17_RS17115	0.75	+0.2
3,852,729	+		HER17_RS17115	0.75	-0.2
3,852,729	+		HER17_RS17115	0.75	+0.5
3,852,729	+		HER17_RS17115	0.75	-0.8
3,852,729	+		HER17_RS17115	0.75	-1.5
3,852,729	+		HER17_RS17115	0.75	+0.3
3,852,729	+		HER17_RS17115	0.75	+0.1
3,852,729	+		HER17_RS17115	0.75	+0.1
3,852,729	+		HER17_RS17115	0.75	+0.6
3,852,730	-		HER17_RS17115	0.75	+0.7
3,852,730	-		HER17_RS17115	0.75	-0.3
3,852,730	-		HER17_RS17115	0.75	+0.2
3,852,730	-		HER17_RS17115	0.75	+0.2
3,852,730	-		HER17_RS17115	0.75	+0.8
3,852,730	-		HER17_RS17115	0.75	-0.1
3,852,768	+		HER17_RS17115	0.79	+1.5
3,852,796	+		HER17_RS17115	0.83	-0.1
3,852,906	-				+0.1
3,852,906	-				-0.5
3,852,937	-				-0.4
3,853,064	-				-0.4
3,853,084	+				-0.1
3,853,109	-				+0.3
3,853,130	+				+0.7
3,853,143	+				+0.1
3,853,144	-				+0.8
3,853,263	+				+0.1
3,853,264	-				+0.2
3,853,267	-				+0.9
3,853,267	-				-1.3
3,853,276	+				-0.5
3,853,287	+				-0.3
3,853,310	+				-1.4
3,853,310	+				+0.4
3,853,310	+				-0.8
3,853,310	+				-0.7
3,853,310	+				-0.2
3,853,310	+				+0.1
3,853,310	+				+0.0
3,853,311	-				+0.2
3,853,311	-				+0.0
3,853,313	+				+0.8
3,853,322	+				-0.3
3,853,322	+				-1.0
3,853,322	+				-0.2
3,853,322	+				+0.6
3,853,323	-				+0.4
3,853,323	-				+1.0
3,853,326	-				+0.4
3,853,326	-				+0.4
3,853,351	-				-0.1
3,853,364	+				+0.6
3,853,364	+				+0.0
3,853,365	-				+0.2
3,853,375	-				+0.0
3,853,394	+				+0.2
3,853,410	+				-0.1
3,853,411	-				+0.2
3,853,448	-				-0.2
3,853,457	+				-0.3
3,853,457	+				-0.6
3,853,457	+				-2.8
3,853,457	+				+0.7
3,853,458	-				-0.3
3,853,458	-				-0.5
3,853,458	-				-2.3
3,853,458	-				+0.3
3,853,458	-				+0.0
3,853,460	+				+0.4
3,853,461	-				+0.2
3,853,499	+				+1.5
3,853,691	+		HER17_RS17120	0.15	-0.2
3,853,691	+		HER17_RS17120	0.15	+0.4
3,853,691	+		HER17_RS17120	0.15	+0.6
3,853,691	+		HER17_RS17120	0.15	+0.1
3,853,692	-		HER17_RS17120	0.15	+1.4
3,853,692	-		HER17_RS17120	0.15	-0.6
3,853,692	-		HER17_RS17120	0.15	-0.6
3,853,765	+		HER17_RS17120	0.20	-1.8
3,853,845	-		HER17_RS17120	0.25	-0.3
3,853,845	-		HER17_RS17120	0.25	-0.9
3,853,850	-		HER17_RS17120	0.25	+0.3
3,853,850	-		HER17_RS17120	0.25	+0.2
3,853,897	+		HER17_RS17120	0.28	-0.4
3,853,898	-		HER17_RS17120	0.28	+0.3
3,853,901	+		HER17_RS17120	0.28	-0.3
3,853,901	+		HER17_RS17120	0.28	+0.1
3,853,901	+		HER17_RS17120	0.28	+0.6
3,853,901	+		HER17_RS17120	0.28	-0.4
3,853,901	+		HER17_RS17120	0.28	+0.3
3,853,902	-		HER17_RS17120	0.28	-0.7
3,853,902	-		HER17_RS17120	0.28	-0.5
3,853,902	-		HER17_RS17120	0.28	-0.3
3,853,902	-		HER17_RS17120	0.28	-0.2
3,853,949	+		HER17_RS17120	0.31	-1.5
3,853,949	+		HER17_RS17120	0.31	-0.6
3,853,949	+		HER17_RS17120	0.31	-0.9
3,853,950	-		HER17_RS17120	0.31	+0.8
3,853,950	-		HER17_RS17120	0.31	-0.2
3,853,950	-		HER17_RS17120	0.31	+0.8
3,853,950	-		HER17_RS17120	0.31	+0.2
3,853,950	-		HER17_RS17120	0.31	-0.5
3,853,972	+		HER17_RS17120	0.32	-0.2
3,853,972	+		HER17_RS17120	0.32	-0.1
3,853,973	-		HER17_RS17120	0.32	+0.9
3,853,973	-		HER17_RS17120	0.32	+0.4
3,854,011	+		HER17_RS17120	0.35	+0.2
3,854,019	-		HER17_RS17120	0.35	+0.4
3,854,019	-		HER17_RS17120	0.35	+0.1
3,854,024	+		HER17_RS17120	0.36	+0.2
3,854,025	-		HER17_RS17120	0.36	+0.8
3,854,025	-		HER17_RS17120	0.36	+0.5
3,854,057	-		HER17_RS17120	0.38	+1.1
3,854,099	-		HER17_RS17120	0.40	-0.1
3,854,117	+		HER17_RS17120	0.41	-0.9
3,854,192	+		HER17_RS17120	0.46	-1.2
3,854,193	-		HER17_RS17120	0.46	-0.2
3,854,193	-		HER17_RS17120	0.46	-0.1
3,854,195	+		HER17_RS17120	0.46	-1.7
3,854,195	+		HER17_RS17120	0.46	-0.1
3,854,315	+		HER17_RS17120	0.53	-0.4
3,854,405	-		HER17_RS17120	0.59	-0.4
3,854,451	+		HER17_RS17120	0.62	-0.5
3,854,471	+		HER17_RS17120	0.63	+0.6
3,854,471	+		HER17_RS17120	0.63	-1.0
3,854,471	+		HER17_RS17120	0.63	+1.1
3,854,471	+		HER17_RS17120	0.63	-0.4
3,854,471	+		HER17_RS17120	0.63	+0.2
3,854,472	-		HER17_RS17120	0.63	+0.6
3,854,472	-		HER17_RS17120	0.63	-1.1
3,854,472	-		HER17_RS17120	0.63	-0.9
3,854,472	-		HER17_RS17120	0.63	-1.4
3,854,472	-		HER17_RS17120	0.63	-0.5
3,854,472	-		HER17_RS17120	0.63	-0.4
3,854,472	-		HER17_RS17120	0.63	+0.0
3,854,472	-		HER17_RS17120	0.63	+1.4
3,854,472	-		HER17_RS17120	0.63	-0.3
3,854,473	+		HER17_RS17120	0.63	+0.5
3,854,473	+		HER17_RS17120	0.63	+0.1
3,854,473	+		HER17_RS17120	0.63	-0.6
3,854,473	+		HER17_RS17120	0.63	-0.4
3,854,474	-		HER17_RS17120	0.63	-0.7
3,854,474	-		HER17_RS17120	0.63	-0.2
3,854,675	+		HER17_RS17120	0.75	-0.0
3,854,675	+		HER17_RS17120	0.75	+0.5
3,854,676	-		HER17_RS17120	0.75	-0.3
3,854,676	-		HER17_RS17120	0.75	-0.1
3,854,676	-		HER17_RS17120	0.75	-0.1
3,854,676	-		HER17_RS17120	0.75	-0.2
3,854,699	+		HER17_RS17120	0.77	-0.1
3,854,777	+		HER17_RS17120	0.81	+0.4
3,854,880	-		HER17_RS17120	0.88	+0.8
3,855,026	-				-0.3
3,855,026	-				-0.4
3,855,080	+				+0.2
3,855,084	+				-2.5
3,855,084	+				+0.1
3,855,084	+				+0.3
3,855,085	-				+1.6
3,855,085	-				+0.3
3,855,085	-				+0.2
3,855,085	-				-1.0
3,855,092	-				+0.2
3,855,101	-				+0.0
3,855,142	-				+0.0
3,855,142	-				+0.7
3,855,149	-				-0.2
3,855,149	-				-0.0
3,855,159	+				-0.9
3,855,160	-				-0.3
3,855,160	-				-0.4
3,855,192	-				+1.5
3,855,210	-				+0.0
3,855,218	-				+0.3
3,855,248	+				+0.0
3,855,248	+				+0.2
3,855,248	+				-0.2
3,855,249	-				+0.0
3,855,249	-				-0.7
3,855,249	-				+0.8
3,855,259	-				+0.0
3,855,265	+				-0.6
3,855,266	-				-0.1
3,855,266	-				-1.7
3,855,266	-				+0.7
3,855,303	+				+0.2
3,855,304	-				+0.4
3,855,422	+				+2.3
3,855,461	+		HER17_RS17125	0.11	-0.0
3,855,461	+		HER17_RS17125	0.11	+0.5
3,855,461	+		HER17_RS17125	0.11	+0.2
3,855,462	-		HER17_RS17125	0.11	+0.0
3,855,472	+		HER17_RS17125	0.11	+0.0
3,855,481	-		HER17_RS17125	0.12	-0.2
3,855,644	+		HER17_RS17125	0.22	+1.0
3,855,645	-		HER17_RS17125	0.23	+2.1
3,855,645	-		HER17_RS17125	0.23	+0.7
3,855,773	-		HER17_RS17125	0.31	-0.5
3,856,044	+		HER17_RS17125	0.48	-0.5
3,856,056	+		HER17_RS17125	0.49	+0.6