Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16940

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,809,247	-		HER17_RS16935	0.13	+0.1
3,809,318	+		HER17_RS16935	0.19	+0.8
3,809,319	-		HER17_RS16935	0.20	+0.2
3,809,347	+		HER17_RS16935	0.22	+0.2
3,809,347	+		HER17_RS16935	0.22	-1.5
3,809,379	-		HER17_RS16935	0.25	-0.0
3,809,379	-		HER17_RS16935	0.25	+0.8
3,809,384	+		HER17_RS16935	0.26	+0.2
3,809,438	+		HER17_RS16935	0.31	+1.1
3,809,438	+		HER17_RS16935	0.31	+0.3
3,809,438	+		HER17_RS16935	0.31	-0.5
3,809,439	-		HER17_RS16935	0.31	-0.2
3,809,439	-		HER17_RS16935	0.31	+0.2
3,809,439	-		HER17_RS16935	0.31	+0.3
3,809,439	-		HER17_RS16935	0.31	+0.0
3,809,439	-		HER17_RS16935	0.31	-0.3
3,809,440	+		HER17_RS16935	0.31	-0.3
3,809,464	+		HER17_RS16935	0.34	+0.2
3,809,464	+		HER17_RS16935	0.34	-0.0
3,809,465	-		HER17_RS16935	0.34	-0.3
3,809,493	+		HER17_RS16935	0.36	+0.3
3,809,494	-		HER17_RS16935	0.36	+0.1
3,809,687	+		HER17_RS16935	0.55	+0.3
3,809,688	-		HER17_RS16935	0.55	-0.5
3,809,688	-		HER17_RS16935	0.55	+1.0
3,809,688	-		HER17_RS16935	0.55	+0.2
3,809,688	-		HER17_RS16935	0.55	-0.6
3,809,688	-		HER17_RS16935	0.55	+0.5
3,809,694	+		HER17_RS16935	0.56	+0.9
3,809,694	+		HER17_RS16935	0.56	+0.6
3,809,725	+		HER17_RS16935	0.59	+0.3
3,809,725	+		HER17_RS16935	0.59	+0.2
3,809,725	+		HER17_RS16935	0.59	+0.1
3,809,726	-		HER17_RS16935	0.59	+0.2
3,809,726	-		HER17_RS16935	0.59	-0.0
3,809,765	+		HER17_RS16935	0.63	-0.8
3,809,765	+		HER17_RS16935	0.63	+0.7
3,809,765	+		HER17_RS16935	0.63	-1.8
3,809,765	+		HER17_RS16935	0.63	-0.1
3,809,765	+		HER17_RS16935	0.63	+0.1
3,809,765	+		HER17_RS16935	0.63	+0.0
3,809,766	-		HER17_RS16935	0.63	-0.5
3,809,766	-		HER17_RS16935	0.63	-3.0
3,809,766	-		HER17_RS16935	0.63	+0.5
3,809,766	-		HER17_RS16935	0.63	+0.5
3,809,766	-		HER17_RS16935	0.63	-0.7
3,809,766	-		HER17_RS16935	0.63	+0.3
3,809,766	-		HER17_RS16935	0.63	+0.1
3,809,766	-		HER17_RS16935	0.63	+0.1
3,809,766	-		HER17_RS16935	0.63	-0.2
3,809,980	+		HER17_RS16935	0.83	+0.2
3,809,980	+		HER17_RS16935	0.83	+0.6
3,809,995	+		HER17_RS16935	0.85	+0.6
3,810,083	+				-0.1
3,810,084	-				+0.4
3,810,128	-				+0.1
3,810,133	-				-0.5
3,810,139	+				-1.4
3,810,139	+				-2.0
3,810,139	+				-0.2
3,810,139	+				+1.0
3,810,140	-				-0.2
3,810,140	-				+1.0
3,810,143	+				+0.7
3,810,143	+				+0.3
3,810,143	+				-0.7
3,810,150	-				-0.8
3,810,183	+				+0.4
3,810,196	+				+0.4
3,810,196	+				-0.5
3,810,196	+				+0.0
3,810,196	+				+0.5
3,810,196	+				+0.5
3,810,197	-				-1.6
3,810,197	-				-0.4
3,810,328	-		HER17_RS16940	0.26	+0.5
3,810,346	+		HER17_RS16940	0.29	+0.1
3,810,347	-		HER17_RS16940	0.29	-1.5
3,810,347	-		HER17_RS16940	0.29	+0.5
3,810,347	-		HER17_RS16940	0.29	+0.6
3,810,473	-		HER17_RS16940	0.52	+0.3
3,810,476	+		HER17_RS16940	0.52	-0.2
3,810,477	-		HER17_RS16940	0.52	-0.2
3,810,477	-		HER17_RS16940	0.52	+0.1
3,810,581	+		HER17_RS16940	0.71	+0.7
3,810,581	+		HER17_RS16940	0.71	+0.2
3,810,581	+		HER17_RS16940	0.71	+0.9
3,810,581	+		HER17_RS16940	0.71	-0.5
3,810,582	-		HER17_RS16940	0.71	+0.5
3,810,590	-		HER17_RS16940	0.72	-0.5
3,810,590	-		HER17_RS16940	0.72	+0.1
3,810,681	+		HER17_RS16940	0.88	-0.5
3,810,730	+				+0.9
3,810,740	+				+0.4
3,810,744	+				+0.3
3,810,744	+				-0.0
3,810,744	+				+0.6
3,810,745	-				-0.0
3,810,746	+				-0.7
3,810,746	+				-0.6
3,810,747	-				-0.3
3,810,755	+				-0.1
3,810,782	+				-0.9
3,810,782	+				+1.5
3,810,782	+				+0.8
3,810,825	+				-0.0
3,810,857	+		HER17_RS16945	0.13	-0.0
3,810,858	-		HER17_RS16945	0.13	-0.3
3,810,980	+		HER17_RS16945	0.29	-0.4
3,810,981	-		HER17_RS16945	0.29	-0.9
3,810,981	-		HER17_RS16945	0.29	+0.5
3,811,026	+		HER17_RS16945	0.35	-0.2
3,811,026	+		HER17_RS16945	0.35	+0.1
3,811,027	-		HER17_RS16945	0.35	-0.0
3,811,027	-		HER17_RS16945	0.35	-1.5
3,811,040	-		HER17_RS16945	0.37	+1.1
3,811,110	+		HER17_RS16945	0.47	+0.4
3,811,111	-		HER17_RS16945	0.47	+0.3
3,811,111	-		HER17_RS16945	0.47	+0.1
3,811,117	+		HER17_RS16945	0.47	+0.8
3,811,196	+		HER17_RS16945	0.58	-0.6
3,811,196	+		HER17_RS16945	0.58	+0.2
3,811,197	-		HER17_RS16945	0.58	+0.8
3,811,197	-		HER17_RS16945	0.58	+0.0
3,811,197	-		HER17_RS16945	0.58	-1.8
3,811,270	+		HER17_RS16945	0.68	+1.9
3,811,271	-		HER17_RS16945	0.68	+0.1
3,811,341	-		HER17_RS16945	0.77	+0.4
3,811,408	+		HER17_RS16945	0.86	-0.4
3,811,408	+		HER17_RS16945	0.86	-0.6
3,811,433	-		HER17_RS16945	0.90	+0.1
3,811,433	-		HER17_RS16945	0.90	+0.4
3,811,443	+				-0.3
3,811,494	+				-0.2
3,811,495	-				+0.1
3,811,569	+				+0.4
3,811,600	+				-0.3
3,811,600	+				-0.3
3,811,601	-				-0.7
3,811,601	-				-0.0
3,811,601	-				-0.7
3,811,601	-				-0.1
3,811,601	-				-0.6
3,811,605	-				-0.0