Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16920

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,804,141	+		HER17_RS16915	0.63	+0.6
3,804,178	+		HER17_RS16915	0.68	+1.8
3,804,200	+		HER17_RS16915	0.71	-1.5
3,804,200	+		HER17_RS16915	0.71	+0.1
3,804,200	+		HER17_RS16915	0.71	+1.0
3,804,201	-		HER17_RS16915	0.71	-0.5
3,804,201	-		HER17_RS16915	0.71	-0.2
3,804,216	+		HER17_RS16915	0.73	+0.1
3,804,296	-		HER17_RS16915	0.84	+0.0
3,804,299	-		HER17_RS16915	0.84	+0.2
3,804,464	-				-2.6
3,804,478	-				-2.2
3,804,482	-				-2.8
3,804,487	-				-2.5
3,804,499	-				-1.5
3,804,625	+				+0.6
3,804,639	-				-0.6
3,804,920	+				-0.5
3,804,921	-				-0.4
3,804,967	-				+0.6
3,805,045	+				+1.7
3,805,046	-				-0.1
3,805,046	-				+1.5
3,805,074	+				+0.4
3,805,110	+				-0.1
3,805,209	+		HER17_RS16920	0.14	+0.1
3,805,210	-		HER17_RS16920	0.14	+0.6
3,805,210	-		HER17_RS16920	0.14	+0.1
3,805,210	-		HER17_RS16920	0.14	+1.2
3,805,228	-		HER17_RS16920	0.17	+0.7
3,805,260	-		HER17_RS16920	0.23	+0.3
3,805,353	+		HER17_RS16920	0.40	+0.2
3,805,418	+		HER17_RS16920	0.52	+0.9
3,805,432	-		HER17_RS16920	0.55	+0.1
3,805,432	-		HER17_RS16920	0.55	+0.6
3,805,432	-		HER17_RS16920	0.55	-0.6
3,805,434	+		HER17_RS16920	0.55	-0.1
3,805,445	+		HER17_RS16920	0.57	+0.8
3,805,445	+		HER17_RS16920	0.57	-0.2
3,805,446	-		HER17_RS16920	0.57	-0.0
3,805,451	+		HER17_RS16920	0.58	+0.2
3,805,679	-				+0.1
3,805,705	+				+0.3
3,805,705	+				-0.1
3,805,705	+				+0.4
3,805,707	+				+0.3
3,805,707	+				+0.4
3,805,738	-				-0.2
3,805,738	-				+0.1
3,805,739	+				-0.4
3,805,739	+				+0.3
3,805,739	+				-0.5
3,805,739	+				-0.2
3,805,740	-				+0.9
3,805,743	+				+2.6
3,805,743	+				+0.4
3,805,743	+				-0.0
3,805,744	-				-1.4
3,805,744	-				+0.5
3,805,748	+				+0.4
3,805,748	+				-0.1
3,805,796	-				-0.6
3,805,799	+				+0.4
3,805,799	+				+0.6
3,805,799	+				-0.4
3,805,799	+				+0.1
3,805,800	-				+0.6
3,805,804	-				+0.0
3,805,804	-				-2.6
3,805,808	-				-0.3
3,805,808	-				+0.4
3,805,808	-				-0.6
3,805,808	-				+0.5
3,805,829	-				-0.1
3,805,829	-				+0.8
3,805,831	+				-0.5
3,805,831	+				+0.4
3,805,873	+				+0.8
3,805,895	-				+0.4
3,805,895	-				+0.2
3,805,921	+				-0.3
3,805,988	+				-1.6
3,805,989	-				+0.6
3,806,013	+				+0.1
3,806,057	-				-0.3
3,806,060	+				+0.1
3,806,060	+				-0.0
3,806,060	+				+0.9
3,806,061	-				+0.5
3,806,061	-				-0.1
3,806,164	-		HER17_RS16925	0.14	+0.4
3,806,226	+		HER17_RS16925	0.16	+0.2
3,806,226	+		HER17_RS16925	0.16	-1.0
3,806,226	+		HER17_RS16925	0.16	+0.4
3,806,246	-		HER17_RS16925	0.17	-1.1
3,806,246	-		HER17_RS16925	0.17	-1.1
3,806,248	+		HER17_RS16925	0.17	+0.7
3,806,274	-		HER17_RS16925	0.18	+0.0
3,806,274	-		HER17_RS16925	0.18	+0.3
3,806,274	-		HER17_RS16925	0.18	+0.2
3,806,274	-		HER17_RS16925	0.18	+0.4
3,806,339	+		HER17_RS16925	0.21	-1.4
3,806,339	+		HER17_RS16925	0.21	-0.7
3,806,339	+		HER17_RS16925	0.21	+0.8
3,806,339	+		HER17_RS16925	0.21	+0.9
3,806,358	+		HER17_RS16925	0.22	+0.5
3,806,358	+		HER17_RS16925	0.22	+0.3
3,806,359	-		HER17_RS16925	0.22	-1.3
3,806,368	+		HER17_RS16925	0.22	-0.2
3,806,393	+		HER17_RS16925	0.23	-0.6
3,806,394	-		HER17_RS16925	0.23	+0.5
3,806,394	-		HER17_RS16925	0.23	-0.6
3,806,453	+		HER17_RS16925	0.26	-0.5
3,806,516	+		HER17_RS16925	0.28	+0.9
3,806,516	+		HER17_RS16925	0.28	-0.4
3,806,517	-		HER17_RS16925	0.28	+0.3
3,806,571	-		HER17_RS16925	0.30	-0.3
3,806,571	-		HER17_RS16925	0.30	-0.3
3,806,593	+		HER17_RS16925	0.31	-0.1
3,806,593	+		HER17_RS16925	0.31	+0.4
3,806,593	+		HER17_RS16925	0.31	+0.6
3,806,594	-		HER17_RS16925	0.31	-0.8
3,806,597	+		HER17_RS16925	0.31	-0.2