Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15580

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,493,583	+		HER17_RS15570	0.89	+0.6
3,493,584	-		HER17_RS15570	0.89	-1.2
3,493,628	+				+0.4
3,493,628	+				+0.8
3,493,628	+				+0.1
3,493,628	+				-0.2
3,493,629	-				-0.2
3,493,629	-				-0.4
3,493,629	-				-1.9
3,493,630	+				-0.0
3,493,630	+				+0.8
3,493,630	+				-0.9
3,493,631	-				+1.5
3,493,750	+				-0.3
3,493,750	+				+0.5
3,493,750	+				-0.5
3,493,750	+				+0.6
3,493,750	+				-0.8
3,493,751	-				-1.7
3,493,818	+				+1.3
3,493,821	+				+0.3
3,493,830	+				+0.3
3,493,837	+				-0.7
3,493,837	+				-0.4
3,493,837	+				+1.1
3,493,837	+				+0.2
3,493,852	+				-0.0
3,493,853	-				+0.4
3,493,884	+				+1.7
3,493,890	-				-2.2
3,493,917	+				+0.5
3,493,917	+				-1.2
3,493,917	+				+0.4
3,494,012	+		HER17_RS15575	0.20	+0.1
3,494,012	+		HER17_RS15575	0.20	-1.4
3,494,012	+		HER17_RS15575	0.20	-1.5
3,494,012	+		HER17_RS15575	0.20	-1.5
3,494,016	+		HER17_RS15575	0.21	+0.4
3,494,016	+		HER17_RS15575	0.21	+1.2
3,494,017	-		HER17_RS15575	0.21	-0.9
3,494,036	+		HER17_RS15575	0.24	-2.2
3,494,037	-		HER17_RS15575	0.24	-1.2
3,494,079	+		HER17_RS15575	0.31	-1.4
3,494,079	+		HER17_RS15575	0.31	-0.1
3,494,080	-		HER17_RS15575	0.31	-1.6
3,494,080	-		HER17_RS15575	0.31	-0.9
3,494,080	-		HER17_RS15575	0.31	-0.1
3,494,091	+		HER17_RS15575	0.33	-1.6
3,494,091	+		HER17_RS15575	0.33	-0.6
3,494,092	-		HER17_RS15575	0.33	-2.0
3,494,096	-		HER17_RS15575	0.33	-0.4
3,494,124	+		HER17_RS15575	0.38	-0.6
3,494,124	+		HER17_RS15575	0.38	-1.2
3,494,124	+		HER17_RS15575	0.38	-0.7
3,494,125	-		HER17_RS15575	0.38	-0.4
3,494,523	-				-0.9
3,494,632	+				+0.9
3,494,633	-				+0.6
3,494,772	+				-0.3
3,494,772	+				+0.5
3,494,772	+				-0.9
3,494,783	-				+0.1
3,494,828	-				-0.5
3,494,834	+				-0.3
3,494,834	+				+0.3
3,494,835	-				+1.2
3,494,849	+				-0.4
3,494,850	-				+0.4
3,494,947	+		HER17_RS15580	0.13	-0.3
3,494,948	-		HER17_RS15580	0.13	+0.3
3,494,948	-		HER17_RS15580	0.13	+0.5
3,494,969	+		HER17_RS15580	0.14	+0.8
3,494,969	+		HER17_RS15580	0.14	-0.1
3,494,969	+		HER17_RS15580	0.14	-0.5
3,494,969	+		HER17_RS15580	0.14	-0.1
3,494,969	+		HER17_RS15580	0.14	-1.7
3,494,973	+		HER17_RS15580	0.14	+0.5
3,494,974	-		HER17_RS15580	0.14	-0.7
3,494,974	-		HER17_RS15580	0.14	+0.8
3,494,974	-		HER17_RS15580	0.14	+0.2
3,495,251	+		HER17_RS15580	0.24	-0.4
3,495,265	-		HER17_RS15580	0.24	-0.3
3,495,265	-		HER17_RS15580	0.24	-0.2
3,495,288	-		HER17_RS15580	0.25	-1.1
3,495,352	+		HER17_RS15580	0.27	+0.3
3,495,353	-		HER17_RS15580	0.28	-1.5
3,495,353	-		HER17_RS15580	0.28	+0.2
3,495,653	-		HER17_RS15580	0.38	-0.6
3,495,656	+		HER17_RS15580	0.38	+0.7
3,495,657	-		HER17_RS15580	0.38	+0.2
3,495,657	-		HER17_RS15580	0.38	-0.3
3,495,723	+		HER17_RS15580	0.40	-0.2
3,495,759	+		HER17_RS15580	0.42	-1.9
3,495,759	+		HER17_RS15580	0.42	+0.9
3,495,759	+		HER17_RS15580	0.42	-0.2
3,495,760	-		HER17_RS15580	0.42	+0.2
3,495,944	+		HER17_RS15580	0.48	+0.7
3,496,018	+		HER17_RS15580	0.51	-0.5
3,496,018	+		HER17_RS15580	0.51	+1.3
3,496,019	-		HER17_RS15580	0.51	-0.4
3,496,214	-		HER17_RS15580	0.58	-0.5
3,496,219	+		HER17_RS15580	0.58	+0.6
3,496,220	-		HER17_RS15580	0.58	-0.4
3,496,253	-		HER17_RS15580	0.59	+0.4
3,496,257	+		HER17_RS15580	0.59	+0.1
3,496,257	+		HER17_RS15580	0.59	+0.8
3,496,258	-		HER17_RS15580	0.59	+0.1
3,496,258	-		HER17_RS15580	0.59	+0.5
3,496,258	-		HER17_RS15580	0.59	+0.3
3,496,301	-		HER17_RS15580	0.61	-0.1
3,496,303	+		HER17_RS15580	0.61	-0.6
3,496,304	-		HER17_RS15580	0.61	+0.3
3,496,445	-		HER17_RS15580	0.66	+0.4
3,496,456	+		HER17_RS15580	0.66	-0.2
3,496,456	+		HER17_RS15580	0.66	+0.1
3,496,456	+		HER17_RS15580	0.66	-1.3
3,496,456	+		HER17_RS15580	0.66	-0.6
3,496,456	+		HER17_RS15580	0.66	-0.7
3,496,457	-		HER17_RS15580	0.66	-0.1
3,496,457	-		HER17_RS15580	0.66	-0.2
3,496,457	-		HER17_RS15580	0.66	+0.0
3,496,493	-		HER17_RS15580	0.67	+2.2
3,496,509	+		HER17_RS15580	0.68	-0.9
3,496,524	+		HER17_RS15580	0.69	+0.9
3,496,525	-		HER17_RS15580	0.69	+0.4
3,496,599	+		HER17_RS15580	0.71	+0.1
3,496,600	-		HER17_RS15580	0.71	+0.6
3,496,600	-		HER17_RS15580	0.71	-0.2
3,496,603	+		HER17_RS15580	0.71	-0.4
3,496,604	-		HER17_RS15580	0.71	+0.0
3,496,626	-		HER17_RS15580	0.72	+0.4
3,496,638	+		HER17_RS15580	0.73	-1.7
3,496,648	+		HER17_RS15580	0.73	-0.7
3,496,649	-		HER17_RS15580	0.73	+0.3
3,496,664	+		HER17_RS15580	0.73	+0.2
3,496,681	-		HER17_RS15580	0.74	-1.0
3,496,715	-		HER17_RS15580	0.75	+0.6
3,496,715	-		HER17_RS15580	0.75	+0.5
3,496,788	+		HER17_RS15580	0.78	+1.4
3,496,789	-		HER17_RS15580	0.78	+0.2
3,496,789	-		HER17_RS15580	0.78	+0.6
3,496,809	-		HER17_RS15580	0.79	+0.1
3,496,809	-		HER17_RS15580	0.79	-0.0
3,496,812	+		HER17_RS15580	0.79	-1.0
3,496,813	-		HER17_RS15580	0.79	-0.1
3,496,848	+		HER17_RS15580	0.80	-0.5
3,496,848	+		HER17_RS15580	0.80	-1.0
3,496,918	+		HER17_RS15580	0.82	-0.4
3,496,918	+		HER17_RS15580	0.82	+0.1
3,496,927	+		HER17_RS15580	0.83	-0.3
3,496,927	+		HER17_RS15580	0.83	-0.2
3,496,928	-		HER17_RS15580	0.83	-1.3
3,496,969	+		HER17_RS15580	0.84	-0.3
3,496,969	+		HER17_RS15580	0.84	+1.8
3,496,969	+		HER17_RS15580	0.84	-0.1
3,496,970	-		HER17_RS15580	0.84	-0.6
3,496,970	-		HER17_RS15580	0.84	+0.2
3,497,005	+		HER17_RS15580	0.85	+0.8
3,497,005	+		HER17_RS15580	0.85	+0.4
3,497,014	-		HER17_RS15580	0.86	-0.1
3,497,085	+		HER17_RS15580	0.88	+0.5
3,497,086	-		HER17_RS15580	0.88	+0.2
3,497,086	-		HER17_RS15580	0.88	+0.5
3,497,122	-		HER17_RS15580	0.89	+0.5
3,497,238	+				-0.4
3,497,239	-				-0.0
3,497,266	+				-0.3
3,497,267	-				-0.1
3,497,267	-				+0.9
3,497,268	+				+0.4
3,497,377	-				+0.2
3,497,461	+				-0.5
3,497,461	+				-0.4
3,497,461	+				+0.4
3,497,508	-				+0.1
3,497,508	-				+0.0
3,497,508	-				-0.1
3,497,539	+				-0.3
3,497,626	-				+0.1