Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15455

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,462,976	+		HER17_RS15445	0.85	+0.5
3,463,027	+				+0.4
3,463,032	+				-0.5
3,463,032	+				+1.0
3,463,032	+				+0.3
3,463,033	-				+0.3
3,463,045	+				+0.4
3,463,046	-				-0.7
3,463,092	+				-0.5
3,463,092	+				+0.1
3,463,093	-				-0.1
3,463,307	+		HER17_RS15450	0.31	-1.5
3,463,543	-		HER17_RS15450	0.64	-2.4
3,463,543	-		HER17_RS15450	0.64	-3.1
3,463,653	+		HER17_RS15450	0.79	-2.3
3,463,654	-		HER17_RS15450	0.80	-0.2
3,463,663	+		HER17_RS15450	0.81	-2.7
3,463,759	-				-1.7
3,463,898	+				+0.0
3,463,968	+				-0.3
3,464,108	+		HER17_RS15455	0.16	+0.6
3,464,108	+		HER17_RS15455	0.16	-0.1
3,464,109	-		HER17_RS15455	0.16	+0.3
3,464,155	+		HER17_RS15455	0.20	-0.0
3,464,155	+		HER17_RS15455	0.20	+0.6
3,464,156	-		HER17_RS15455	0.20	-0.2
3,464,162	+		HER17_RS15455	0.21	-1.2
3,464,285	+		HER17_RS15455	0.30	+0.8
3,464,286	-		HER17_RS15455	0.30	+0.6
3,464,325	-		HER17_RS15455	0.33	-0.5
3,464,341	-		HER17_RS15455	0.34	+0.3
3,464,367	+		HER17_RS15455	0.36	+0.1
3,464,529	+		HER17_RS15455	0.49	-0.1
3,464,529	+		HER17_RS15455	0.49	+0.5
3,464,529	+		HER17_RS15455	0.49	-0.4
3,464,530	-		HER17_RS15455	0.49	+1.1
3,464,530	-		HER17_RS15455	0.49	+1.1
3,464,531	+		HER17_RS15455	0.49	+0.5
3,464,532	-		HER17_RS15455	0.49	+1.3
3,464,532	-		HER17_RS15455	0.49	+1.4
3,464,532	-		HER17_RS15455	0.49	+0.4
3,464,610	-		HER17_RS15455	0.55	+1.4
3,464,610	-		HER17_RS15455	0.55	-0.6
3,464,862	+		HER17_RS15455	0.75	+0.1
3,464,901	+		HER17_RS15455	0.78	-0.2
3,464,902	-		HER17_RS15455	0.78	+1.3
3,464,904	+		HER17_RS15455	0.78	+1.3
3,464,904	+		HER17_RS15455	0.78	+0.3
3,464,905	-		HER17_RS15455	0.78	-0.8
3,464,905	-		HER17_RS15455	0.78	-1.0
3,464,905	-		HER17_RS15455	0.78	+0.2
3,464,927	+		HER17_RS15455	0.80	+0.4
3,464,985	-		HER17_RS15455	0.84	-0.8
3,464,985	-		HER17_RS15455	0.84	-0.6
3,465,013	+		HER17_RS15455	0.87	+1.1
3,465,017	+		HER17_RS15455	0.87	-1.2
3,465,018	-		HER17_RS15455	0.87	-0.4
3,465,018	-		HER17_RS15455	0.87	-0.6
3,465,050	-		HER17_RS15455	0.89	+0.4
3,465,142	+				-0.1
3,465,143	-				-1.9
3,465,143	-				+1.1
3,465,202	+				+0.4
3,465,202	+				+0.7
3,465,203	-				-0.0
3,465,203	-				-0.0
3,465,203	-				+0.2
3,465,203	-				+0.1
3,465,211	+				+0.8
3,465,211	+				+0.9
3,465,211	+				+0.4
3,465,211	+				-0.0
3,465,211	+				+0.1
3,465,212	-				+0.2
3,465,212	-				+0.3
3,465,215	+				-0.3
3,465,215	+				+0.2
3,465,215	+				+0.4
3,465,216	-				-0.4
3,465,216	-				-0.4
3,465,216	-				-0.4
3,465,216	-				+0.1
3,465,216	-				-0.2
3,465,228	-				-0.4
3,465,243	-				-0.3
3,465,291	+				-1.0
3,465,291	+				+0.2
3,465,291	+				-1.1
3,465,291	+				+0.2
3,465,291	+				-0.2
3,465,292	-				-0.4
3,465,292	-				-2.3
3,465,295	-				+0.3
3,465,295	-				-1.3
3,465,295	-				-0.5
3,465,335	+				-0.1
3,465,354	-				-0.5
3,465,358	-				-0.9
3,465,429	+				-0.3
3,465,460	+				+0.4
3,465,477	-				+0.0
3,465,477	-				-0.9
3,465,497	-				-0.2
3,465,510	-				+0.4
3,465,510	-				+0.8
3,465,510	-				-0.1
3,465,516	+				-1.1
3,465,568	-				-0.3
3,465,568	-				-0.5
3,465,606	+		HER17_RS15460	0.15	-0.3
3,465,678	+		HER17_RS15460	0.26	-0.1
3,465,805	-		HER17_RS15460	0.46	-1.0
3,465,805	-		HER17_RS15460	0.46	-1.4
3,465,805	-		HER17_RS15460	0.46	+0.5
3,465,838	-		HER17_RS15460	0.52	+0.2
3,465,838	-		HER17_RS15460	0.52	+1.2
3,466,020	+		HER17_RS15460	0.81	+0.7
3,466,020	+		HER17_RS15460	0.81	+0.2
3,466,069	+		HER17_RS15460	0.88	+0.1
3,466,069	+		HER17_RS15460	0.88	+0.1
3,466,070	-		HER17_RS15460	0.89	-0.0
3,466,072	+		HER17_RS15460	0.89	-0.2
3,466,073	-		HER17_RS15460	0.89	-1.1
3,466,073	-		HER17_RS15460	0.89	-0.2
3,466,073	-		HER17_RS15460	0.89	-0.2
3,466,076	-		HER17_RS15460	0.89	-1.4
3,466,097	+				+0.1
3,466,097	+				-0.0
3,466,097	+				+0.9
3,466,098	-				-0.3
3,466,145	+				-0.2
3,466,145	+				+0.2
3,466,146	-				+0.3