Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS12560

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,804,246	-		HER17_RS12555	0.24	+0.6
2,804,307	+		HER17_RS12555	0.30	-0.1
2,804,440	-		HER17_RS12555	0.43	+1.6
2,804,565	+		HER17_RS12555	0.55	-0.3
2,804,566	-		HER17_RS12555	0.55	+0.4
2,804,566	-		HER17_RS12555	0.55	+0.7
2,804,570	-		HER17_RS12555	0.56	-0.7
2,804,755	+		HER17_RS12555	0.74	-0.7
2,804,756	-		HER17_RS12555	0.74	+0.0
2,804,756	-		HER17_RS12555	0.74	+0.4
2,804,999	-				+0.0
2,805,007	+				+0.0
2,805,008	-				-0.4
2,805,064	+				-0.0
2,805,065	-				+0.0
2,805,081	-				-0.2
2,805,088	-				+0.7
2,805,090	-				+0.2
2,805,102	-				+0.7
2,805,158	+				+0.2
2,805,158	+				+0.4
2,805,158	+				-0.8
2,805,191	+		HER17_RS12560	0.11	-0.1
2,805,192	-		HER17_RS12560	0.11	-0.2
2,805,192	-		HER17_RS12560	0.11	+0.3
2,805,219	+		HER17_RS12560	0.14	+0.1
2,805,265	-		HER17_RS12560	0.20	+0.1
2,805,265	-		HER17_RS12560	0.20	+1.0
2,805,268	-		HER17_RS12560	0.20	-0.3
2,805,439	-		HER17_RS12560	0.40	-0.5
2,805,439	-		HER17_RS12560	0.40	-1.3
2,805,541	-		HER17_RS12560	0.52	+0.8
2,805,677	+		HER17_RS12560	0.68	+0.5
2,805,684	+		HER17_RS12560	0.69	+0.7
2,805,684	+		HER17_RS12560	0.69	-0.1
2,805,684	+		HER17_RS12560	0.69	+0.1
2,805,684	+		HER17_RS12560	0.69	+0.5
2,805,684	+		HER17_RS12560	0.69	-0.8
2,805,684	+		HER17_RS12560	0.69	+0.2
2,805,685	-		HER17_RS12560	0.69	+0.6
2,805,685	-		HER17_RS12560	0.69	-0.8
2,805,685	-		HER17_RS12560	0.69	-1.8
2,805,708	+		HER17_RS12560	0.72	+0.2
2,805,708	+		HER17_RS12560	0.72	-0.7
2,805,743	+		HER17_RS12560	0.76	-0.6
2,805,743	+		HER17_RS12560	0.76	+0.1
2,805,743	+		HER17_RS12560	0.76	+0.6
2,805,744	-		HER17_RS12560	0.76	-1.6
2,805,970	-				-1.0
2,805,986	+				+0.9
2,805,987	-				+0.1
2,806,001	-				+0.9
2,806,024	+				-0.8
2,806,025	-				-0.3
2,806,025	-				-1.0
2,806,025	-				-0.8
2,806,030	+				+0.2
2,806,030	+				+0.7
2,806,088	+				-0.2
2,806,088	+				-1.0
2,806,088	+				+0.0
2,806,089	-				-0.2
2,806,089	-				-1.0
2,806,089	-				+1.0
2,806,089	-				-0.2
2,806,093	+				+0.4
2,806,094	-				-0.4
2,806,094	-				+0.4
2,806,112	+				+0.1
2,806,126	+				+0.4
2,806,127	-				+1.0
2,806,175	+		HER17_RS12565	0.14	-0.2
2,806,175	+		HER17_RS12565	0.14	+0.4
2,806,203	-		HER17_RS12565	0.18	-0.0
2,806,218	+		HER17_RS12565	0.21	+0.9
2,806,246	+		HER17_RS12565	0.25	-1.5
2,806,318	-		HER17_RS12565	0.37	+0.9
2,806,336	-		HER17_RS12565	0.40	-1.5
2,806,336	-		HER17_RS12565	0.40	-0.2
2,806,337	+		HER17_RS12565	0.40	-1.0
2,806,425	-		HER17_RS12565	0.54	+0.9
2,806,425	-		HER17_RS12565	0.54	-0.4
2,806,425	-		HER17_RS12565	0.54	+0.2
2,806,427	+		HER17_RS12565	0.55	+0.6
2,806,428	-		HER17_RS12565	0.55	-0.3
2,806,428	-		HER17_RS12565	0.55	-1.6
2,806,469	-		HER17_RS12565	0.61	-1.5
2,806,604	+		HER17_RS12565	0.83	+0.7
2,806,647	+				-0.1
2,806,647	+				+0.4
2,806,704	+				+0.4
2,806,705	-				+0.6
2,806,705	-				+2.1
2,806,708	+				+1.1
2,806,722	+				-0.5
2,806,736	+				+0.7
2,806,737	-				-0.4
2,806,739	+				-0.7
2,806,786	+				+0.7
2,806,786	+				-0.4
2,806,786	+				+0.4
2,806,787	-				+0.2
2,806,787	-				-0.2
2,806,790	+				+0.6
2,806,790	+				+0.4
2,806,790	+				+0.4
2,806,790	+				-0.2
2,806,791	-				-0.3
2,806,791	-				+0.1
2,806,816	+				+0.4
2,806,817	-				-0.2
2,806,817	-				-0.3