Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS12205

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,719,714	+		HER17_RS12200	0.26	+0.5
2,719,714	+		HER17_RS12200	0.26	+0.4
2,719,715	-		HER17_RS12200	0.26	-0.5
2,719,715	-		HER17_RS12200	0.26	-0.8
2,719,715	-		HER17_RS12200	0.26	+0.9
2,719,789	-		HER17_RS12200	0.36	+0.2
2,719,807	-		HER17_RS12200	0.39	+0.6
2,719,812	+		HER17_RS12200	0.40	-0.9
2,719,813	-		HER17_RS12200	0.40	-0.6
2,719,813	-		HER17_RS12200	0.40	+0.1
2,719,849	+		HER17_RS12200	0.45	-0.5
2,719,849	+		HER17_RS12200	0.45	-0.3
2,719,849	+		HER17_RS12200	0.45	+0.6
2,719,850	-		HER17_RS12200	0.45	+0.7
2,719,850	-		HER17_RS12200	0.45	-0.2
2,719,871	-		HER17_RS12200	0.48	-0.4
2,719,913	+		HER17_RS12200	0.54	+0.1
2,719,967	-		HER17_RS12200	0.62	-0.2
2,719,967	-		HER17_RS12200	0.62	+0.2
2,719,967	-		HER17_RS12200	0.62	+0.7
2,720,070	+		HER17_RS12200	0.76	+0.6
2,720,070	+		HER17_RS12200	0.76	+0.6
2,720,077	+		HER17_RS12200	0.77	+0.6
2,720,077	+		HER17_RS12200	0.77	+2.0
2,720,078	-		HER17_RS12200	0.77	+0.4
2,720,134	+		HER17_RS12200	0.85	+1.7
2,720,218	-				+0.2
2,720,218	-				+0.6
2,720,234	-				-0.2
2,720,243	-				+0.5
2,720,243	-				+0.8
2,720,250	-				+0.1
2,720,250	-				+1.0
2,720,265	+				-0.1
2,720,266	-				+0.1
2,720,277	+				+0.3
2,720,306	-				-0.6
2,720,340	+				+0.9
2,720,341	-				+0.0
2,720,344	-				-0.4
2,720,393	-				+0.6
2,720,518	+				+0.2
2,720,569	-				-1.2
2,720,589	+				+0.1
2,720,596	-				+0.6
2,720,629	-				-0.2
2,720,653	+				+0.5
2,720,660	-				+0.8
2,720,662	+				-0.4
2,720,755	-				+0.8
2,720,779	+				-0.1
2,720,856	-				-0.8
2,720,859	+				+0.4
2,720,860	-				+0.9
2,720,860	-				+0.1
2,720,907	+		HER17_RS12205	0.10	-0.7
2,720,907	+		HER17_RS12205	0.10	-2.7
2,721,065	+		HER17_RS12205	0.19	-0.2
2,721,140	+		HER17_RS12205	0.22	+0.0
2,721,250	-		HER17_RS12205	0.28	+0.0
2,721,250	-		HER17_RS12205	0.28	+0.4
2,721,387	+		HER17_RS12205	0.35	+0.9
2,721,388	-		HER17_RS12205	0.35	+0.2
2,721,388	-		HER17_RS12205	0.35	-0.3
2,721,399	+		HER17_RS12205	0.36	-0.3
2,721,498	-		HER17_RS12205	0.41	+0.1
2,721,506	+		HER17_RS12205	0.41	+0.8
2,721,599	+		HER17_RS12205	0.46	+0.5
2,721,599	+		HER17_RS12205	0.46	+1.4
2,721,600	-		HER17_RS12205	0.46	-0.1
2,721,600	-		HER17_RS12205	0.46	-1.9
2,721,647	+		HER17_RS12205	0.49	+0.3
2,721,770	+		HER17_RS12205	0.55	+0.7
2,721,770	+		HER17_RS12205	0.55	+1.0
2,721,770	+		HER17_RS12205	0.55	-0.1
2,721,770	+		HER17_RS12205	0.55	+0.7
2,721,784	+		HER17_RS12205	0.56	+0.1
2,721,785	-		HER17_RS12205	0.56	-0.7
2,721,785	-		HER17_RS12205	0.56	-2.5
2,721,840	-		HER17_RS12205	0.59	-0.9
2,722,019	-		HER17_RS12205	0.68	+1.0
2,722,019	-		HER17_RS12205	0.68	+0.2
2,722,022	+		HER17_RS12205	0.68	-0.1
2,722,022	+		HER17_RS12205	0.68	+0.3
2,722,022	+		HER17_RS12205	0.68	+0.3
2,722,022	+		HER17_RS12205	0.68	-1.1
2,722,023	-		HER17_RS12205	0.68	+1.0
2,722,023	-		HER17_RS12205	0.68	-0.0
2,722,103	+		HER17_RS12205	0.72	+0.0
2,722,351	+		HER17_RS12205	0.85	+0.9
2,722,351	+		HER17_RS12205	0.85	-0.1
2,722,352	-		HER17_RS12205	0.85	+0.1
2,722,447	+				+0.2
2,722,495	+				+0.1
2,722,505	+				-0.4
2,722,505	+				+0.4
2,722,506	-				-0.3
2,722,506	-				+0.7
2,722,506	-				+0.5
2,722,506	-				+0.0
2,722,638	+				+0.5
2,722,638	+				-0.3
2,722,646	+				-0.3
2,722,711	-				+1.2
2,722,754	+				+0.7
2,722,808	+				+0.0
2,722,809	-				+1.1
2,722,811	+				+0.5
2,722,818	+				-0.1
2,722,840	+				-0.5
2,722,864	-				-0.0
2,722,987	+				+0.0
2,722,988	-				+0.2
2,723,074	+				+0.0
2,723,095	+				-0.6
2,723,099	+				+0.5
2,723,143	+		HER17_RS12210	0.10	-0.1
2,723,274	+		HER17_RS12210	0.17	-0.3
2,723,410	+		HER17_RS12210	0.24	-2.1
2,723,411	-		HER17_RS12210	0.24	-0.3
2,723,441	+		HER17_RS12210	0.25	+0.8
2,723,441	+		HER17_RS12210	0.25	-1.0
2,723,444	+		HER17_RS12210	0.26	+0.5
2,723,495	+		HER17_RS12210	0.28	+0.1
2,723,496	-		HER17_RS12210	0.28	-0.1
2,723,530	-		HER17_RS12210	0.30	-0.6
2,723,570	+		HER17_RS12210	0.32	-0.4
2,723,572	+		HER17_RS12210	0.32	+1.9