Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09965

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,203,965	+				+0.9
2,204,615	+		HER17_RS09960	0.73	-0.0
2,204,615	+		HER17_RS09960	0.73	+0.9
2,204,616	-		HER17_RS09960	0.73	+0.4
2,204,618	+		HER17_RS09960	0.73	+0.0
2,204,618	+		HER17_RS09960	0.73	+0.3
2,204,618	+		HER17_RS09960	0.73	-0.2
2,204,619	-		HER17_RS09960	0.73	+0.0
2,204,619	-		HER17_RS09960	0.73	-0.5
2,204,619	-		HER17_RS09960	0.73	+0.6
2,204,621	+		HER17_RS09960	0.73	-1.9
2,204,622	-		HER17_RS09960	0.73	+0.2
2,204,622	-		HER17_RS09960	0.73	-0.9
2,204,656	+		HER17_RS09960	0.77	-0.2
2,204,657	-		HER17_RS09960	0.77	+0.6
2,204,675	+		HER17_RS09960	0.79	-0.5
2,204,675	+		HER17_RS09960	0.79	-0.7
2,204,677	+		HER17_RS09960	0.79	-0.0
2,204,678	-		HER17_RS09960	0.79	-1.0
2,204,678	-		HER17_RS09960	0.79	+1.3
2,204,678	-		HER17_RS09960	0.79	-0.7
2,204,834	+				-0.2
2,204,834	+				+0.2
2,204,834	+				-0.5
2,204,835	-				+0.6
2,204,835	-				+0.2
2,204,837	+				-0.3
2,204,837	+				+0.6
2,204,838	-				-0.7
2,204,976	+				+0.4
2,204,977	-				-0.3
2,204,977	-				-0.5
2,204,986	+				-0.4
2,204,987	-				-0.4
2,205,025	+				+0.4
2,205,025	+				+0.3
2,205,025	+				+0.1
2,205,026	-				+1.2
2,205,026	-				+0.1
2,205,056	+		HER17_RS09965	0.12	+0.2
2,205,185	-		HER17_RS09965	0.24	+1.1
2,205,199	+		HER17_RS09965	0.25	+0.8
2,205,199	+		HER17_RS09965	0.25	-0.7
2,205,225	-		HER17_RS09965	0.28	-0.0
2,205,237	+		HER17_RS09965	0.29	+1.1
2,205,237	+		HER17_RS09965	0.29	-0.3
2,205,238	-		HER17_RS09965	0.29	-1.6
2,205,238	-		HER17_RS09965	0.29	+0.6
2,205,238	-		HER17_RS09965	0.29	+0.9
2,205,311	+		HER17_RS09965	0.35	+0.1
2,205,348	+		HER17_RS09965	0.39	-1.2
2,205,348	+		HER17_RS09965	0.39	-0.4
2,205,349	-		HER17_RS09965	0.39	-0.5
2,205,366	-		HER17_RS09965	0.41	+1.7
2,205,366	-		HER17_RS09965	0.41	+0.4
2,205,471	-		HER17_RS09965	0.50	-0.4
2,205,492	+		HER17_RS09965	0.52	-0.2
2,205,548	-		HER17_RS09965	0.57	-0.2
2,205,548	-		HER17_RS09965	0.57	+0.2
2,205,694	+		HER17_RS09965	0.71	+0.0
2,205,695	-		HER17_RS09965	0.71	+1.0
2,205,840	+		HER17_RS09965	0.84	+0.3
2,205,841	-		HER17_RS09965	0.85	+0.6
2,205,841	-		HER17_RS09965	0.85	+1.0
2,205,886	-		HER17_RS09965	0.89	+0.7
2,206,039	-				+0.2
2,206,096	+				+1.4
2,206,101	-		HER17_RS09970	0.10	-1.7
2,206,191	+		HER17_RS09970	0.22	-0.8
2,206,191	+		HER17_RS09970	0.22	-1.4
2,206,204	+		HER17_RS09970	0.23	+0.8
2,206,298	+		HER17_RS09970	0.35	+0.5
2,206,299	-		HER17_RS09970	0.35	+0.2
2,206,359	-		HER17_RS09970	0.42	+0.5
2,206,584	+		HER17_RS09970	0.70	+0.4
2,206,743	+				+1.0
2,206,776	+				-0.5
2,206,777	-				-0.6
2,206,831	+				+0.3
2,206,832	-				+0.1
2,206,832	-				-2.9
2,206,886	-		HER17_RS09975	0.22	-0.1
2,206,985	-		HER17_RS09975	0.60	+0.1