Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09210

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,018,327	+				-0.3
2,018,361	+				+0.9
2,018,361	+				-0.0
2,018,361	+				+0.7
2,018,362	-				+2.0
2,018,413	+		HER17_RS09200	0.11	-0.4
2,018,414	-		HER17_RS09200	0.11	-0.1
2,018,482	-		HER17_RS09200	0.22	-1.1
2,018,533	-		HER17_RS09200	0.30	+0.5
2,018,533	-		HER17_RS09200	0.30	+0.9
2,018,533	-		HER17_RS09200	0.30	+0.6
2,018,550	+		HER17_RS09200	0.33	+0.3
2,018,551	-		HER17_RS09200	0.33	-0.2
2,018,551	-		HER17_RS09200	0.33	+0.3
2,018,581	+		HER17_RS09200	0.38	+0.6
2,018,581	+		HER17_RS09200	0.38	+0.2
2,018,582	-		HER17_RS09200	0.38	+0.3
2,018,582	-		HER17_RS09200	0.38	-0.1
2,018,582	-		HER17_RS09200	0.38	+0.2
2,018,582	-		HER17_RS09200	0.38	+0.1
2,018,702	-		HER17_RS09200	0.57	-0.0
2,018,709	+		HER17_RS09200	0.58	+0.3
2,018,709	+		HER17_RS09200	0.58	+0.6
2,018,710	-		HER17_RS09200	0.58	-0.5
2,018,710	-		HER17_RS09200	0.58	-0.1
2,018,710	-		HER17_RS09200	0.58	+1.3
2,018,860	+		HER17_RS09200	0.82	+0.2
2,018,860	+		HER17_RS09200	0.82	+0.2
2,018,861	-		HER17_RS09200	0.82	+0.4
2,019,123	-				+0.1
2,019,140	+				-0.1
2,019,213	+				-0.2
2,019,213	+				+0.4
2,019,213	+				-0.3
2,019,214	-				-0.3
2,019,219	-				-0.0
2,019,219	-				-0.4
2,019,392	+				-0.1
2,019,392	+				-0.5
2,019,392	+				+0.2
2,019,393	-				+1.4
2,019,393	-				-0.1
2,019,393	-				+0.8
2,019,396	+				-0.3
2,019,397	-				+0.3
2,019,397	-				-0.2
2,019,686	+		HER17_RS09210	0.13	-0.2
2,019,687	-		HER17_RS09210	0.13	-0.2
2,019,729	+		HER17_RS09210	0.14	+1.9
2,019,731	+		HER17_RS09210	0.14	-0.8
2,019,731	+		HER17_RS09210	0.14	+0.1
2,019,732	-		HER17_RS09210	0.14	+0.1
2,019,732	-		HER17_RS09210	0.14	-0.3
2,019,732	-		HER17_RS09210	0.14	+0.1
2,019,732	-		HER17_RS09210	0.14	-0.6
2,019,820	-		HER17_RS09210	0.17	-2.4
2,019,848	-		HER17_RS09210	0.17	-0.3
2,019,848	-		HER17_RS09210	0.17	-0.1
2,020,047	+		HER17_RS09210	0.23	+1.2
2,020,048	-		HER17_RS09210	0.23	-0.5
2,020,338	-		HER17_RS09210	0.31	-0.6
2,020,491	+		HER17_RS09210	0.35	+0.3
2,020,492	-		HER17_RS09210	0.35	-0.0
2,020,556	+		HER17_RS09210	0.37	+0.7
2,020,556	+		HER17_RS09210	0.37	-1.7
2,020,566	+		HER17_RS09210	0.37	+0.8
2,020,566	+		HER17_RS09210	0.37	+0.1
2,020,615	+		HER17_RS09210	0.39	+0.2
2,020,616	-		HER17_RS09210	0.39	+0.2
2,020,696	+		HER17_RS09210	0.41	+0.2
2,020,852	+		HER17_RS09210	0.45	-0.4
2,020,852	+		HER17_RS09210	0.45	+0.3
2,020,852	+		HER17_RS09210	0.45	-0.0
2,020,853	-		HER17_RS09210	0.45	+0.0
2,020,853	-		HER17_RS09210	0.45	+0.1
2,020,853	-		HER17_RS09210	0.45	+0.3
2,020,853	-		HER17_RS09210	0.45	-0.3
2,020,853	-		HER17_RS09210	0.45	+0.3
2,020,853	-		HER17_RS09210	0.45	+0.7
2,020,874	+		HER17_RS09210	0.46	-0.4
2,020,874	+		HER17_RS09210	0.46	+0.5
2,020,909	+		HER17_RS09210	0.47	-0.5
2,020,917	+		HER17_RS09210	0.47	-0.2
2,020,918	-		HER17_RS09210	0.47	-1.3
2,020,964	+		HER17_RS09210	0.48	-1.1
2,021,116	+		HER17_RS09210	0.53	-0.3
2,021,116	+		HER17_RS09210	0.53	-0.6
2,021,117	-		HER17_RS09210	0.53	+0.9
2,021,151	+		HER17_RS09210	0.54	-0.1
2,021,152	-		HER17_RS09210	0.54	+0.9
2,021,167	-		HER17_RS09210	0.54	+0.4
2,021,167	-		HER17_RS09210	0.54	+0.7
2,021,167	-		HER17_RS09210	0.54	-1.8
2,021,345	+		HER17_RS09210	0.59	+0.3
2,021,345	+		HER17_RS09210	0.59	-0.9
2,021,345	+		HER17_RS09210	0.59	+0.2
2,021,346	-		HER17_RS09210	0.59	+0.4
2,021,346	-		HER17_RS09210	0.59	+0.2
2,021,354	+		HER17_RS09210	0.59	+0.1
2,021,354	+		HER17_RS09210	0.59	+0.3
2,021,465	+		HER17_RS09210	0.62	+0.0
2,021,465	+		HER17_RS09210	0.62	-0.6
2,021,680	+		HER17_RS09210	0.68	-0.6
2,021,681	-		HER17_RS09210	0.68	-0.4
2,021,739	-		HER17_RS09210	0.70	-0.1
2,021,739	-		HER17_RS09210	0.70	+0.9
2,021,883	+		HER17_RS09210	0.74	+0.4
2,021,883	+		HER17_RS09210	0.74	+0.1
2,021,935	-		HER17_RS09210	0.75	-0.2
2,021,987	+		HER17_RS09210	0.77	+0.9
2,021,996	+		HER17_RS09210	0.77	+0.1
2,022,012	-		HER17_RS09210	0.77	-0.0
2,022,028	-		HER17_RS09210	0.78	+0.3
2,022,028	-		HER17_RS09210	0.78	-0.3
2,022,051	+		HER17_RS09210	0.79	-0.5
2,022,052	-		HER17_RS09210	0.79	+0.3
2,022,124	+		HER17_RS09210	0.81	+0.6
2,022,138	+		HER17_RS09210	0.81	+0.2
2,022,139	-		HER17_RS09210	0.81	+1.0
2,022,140	+		HER17_RS09210	0.81	-0.6
2,022,192	+		HER17_RS09210	0.82	+0.7
2,022,268	-		HER17_RS09210	0.85	+0.2
2,022,333	+		HER17_RS09210	0.86	-0.2
2,022,442	+		HER17_RS09210	0.89	-0.6
2,022,524	+				-1.4
2,022,822	+				-0.1
2,022,840	+				-0.5
2,022,840	+				+0.1
2,022,841	-				-0.1
2,022,899	+				-0.4
2,022,918	+				-1.6
2,022,918	+				-0.0
2,022,919	-				+0.4
2,022,975	+				+1.2
2,022,980	-				+0.5
2,022,989	-				+0.0
2,022,989	-				-2.6
2,022,989	-				-0.7
2,022,989	-				+0.9
2,023,089	-		HER17_RS09215	0.73	-0.5
2,023,126	-				-0.2
2,023,126	-				-0.5
2,023,148	+				-0.0
2,023,148	+				+0.8
2,023,149	-				-0.1
2,023,222	+				-2.5
2,023,222	+				+0.1
2,023,223	-				+0.8
2,023,223	-				-0.1
2,023,223	-				-0.1
2,023,224	+				-0.1
2,023,224	+				+0.7
2,023,267	+				-0.5
2,023,268	-				+0.4
2,023,272	-				-2.1
2,023,369	-				+0.5
2,023,473	+		HER17_RS09220	0.15	-0.4
2,023,474	-		HER17_RS09220	0.15	-0.5
2,023,474	-		HER17_RS09220	0.15	+0.1
2,023,500	+		HER17_RS09220	0.17	-0.3
2,023,500	+		HER17_RS09220	0.17	-1.9
2,023,501	-		HER17_RS09220	0.17	+0.2
2,023,501	-		HER17_RS09220	0.17	+0.4
2,023,554	-		HER17_RS09220	0.21	-0.7