Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08690

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS08685 and HER17_RS08690 are separated by 313 nucleotidesHER17_RS08690 and HER17_RS08695 are separated by 60 nucleotidesHER17_RS08695 and HER17_RS08700 are separated by 124 nucleotides HER17_RS08685: HER17_RS08685 - metal-dependent hydrolase, at 1,906,288 to 1,907,085 _RS08685 HER17_RS08690: HER17_RS08690 - PTS glucose transporter subunit IIBC, at 1,907,399 to 1,908,832 _RS08690 HER17_RS08695: HER17_RS08695 - helix-turn-helix transcriptional regulator, at 1,908,893 to 1,909,690 _RS08695 HER17_RS08700: HER17_RS08700 - MFS transporter, at 1,909,815 to 1,911,269 _RS08700 Position (kb) 1907 1908 1909Strain fitness (log2 ratio) -2 -1 0 1 2at 1906.495 kb on - strand, within HER17_RS08685at 1906.510 kb on + strand, within HER17_RS08685at 1906.588 kb on + strand, within HER17_RS08685at 1906.589 kb on - strand, within HER17_RS08685at 1906.642 kb on - strand, within HER17_RS08685at 1906.677 kb on + strand, within HER17_RS08685at 1906.678 kb on - strand, within HER17_RS08685at 1906.698 kb on + strand, within HER17_RS08685at 1906.698 kb on + strand, within HER17_RS08685at 1906.698 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.804 kb on + strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.805 kb on - strand, within HER17_RS08685at 1906.806 kb on + strand, within HER17_RS08685at 1906.807 kb on - strand, within HER17_RS08685at 1906.954 kb on + strand, within HER17_RS08685at 1906.955 kb on - strand, within HER17_RS08685at 1906.955 kb on - strand, within HER17_RS08685at 1906.955 kb on - strand, within HER17_RS08685at 1906.955 kb on - strand, within HER17_RS08685at 1906.959 kb on - strand, within HER17_RS08685at 1906.976 kb on - strand, within HER17_RS08685at 1906.976 kb on - strand, within HER17_RS08685at 1906.976 kb on - strand, within HER17_RS08685at 1907.084 kb on - strandat 1907.120 kb on - strandat 1907.348 kb on + strandat 1907.348 kb on + strandat 1907.349 kb on - strandat 1907.349 kb on - strandat 1907.349 kb on - strandat 1907.349 kb on - strandat 1907.349 kb on - strandat 1907.350 kb on + strandat 1907.350 kb on + strandat 1907.350 kb on + strandat 1907.351 kb on - strandat 1907.351 kb on - strandat 1907.357 kb on + strandat 1907.366 kb on + strandat 1907.376 kb on - strandat 1907.379 kb on - strandat 1907.398 kb on + strandat 1907.398 kb on + strandat 1907.399 kb on - strandat 1907.399 kb on - strandat 1907.434 kb on - strandat 1907.437 kb on + strandat 1907.437 kb on + strandat 1907.437 kb on + strandat 1907.438 kb on - strandat 1907.438 kb on - strandat 1907.438 kb on - strandat 1907.510 kb on - strandat 1907.614 kb on + strand, within HER17_RS08690at 1907.614 kb on + strand, within HER17_RS08690at 1907.617 kb on + strand, within HER17_RS08690at 1907.654 kb on + strand, within HER17_RS08690at 1907.655 kb on - strand, within HER17_RS08690at 1907.675 kb on - strand, within HER17_RS08690at 1907.701 kb on + strand, within HER17_RS08690at 1907.702 kb on - strand, within HER17_RS08690at 1907.706 kb on + strand, within HER17_RS08690at 1907.786 kb on + strand, within HER17_RS08690at 1907.787 kb on - strand, within HER17_RS08690at 1907.787 kb on - strand, within HER17_RS08690at 1907.788 kb on + strand, within HER17_RS08690at 1907.788 kb on + strand, within HER17_RS08690at 1907.788 kb on + strand, within HER17_RS08690at 1907.789 kb on - strand, within HER17_RS08690at 1907.789 kb on - strand, within HER17_RS08690at 1907.789 kb on - strand, within HER17_RS08690at 1907.789 kb on - strand, within HER17_RS08690at 1907.789 kb on - strand, within HER17_RS08690at 1907.804 kb on + strand, within HER17_RS08690at 1907.926 kb on + strand, within HER17_RS08690at 1907.940 kb on + strand, within HER17_RS08690at 1907.990 kb on + strand, within HER17_RS08690at 1907.991 kb on - strand, within HER17_RS08690at 1907.991 kb on - strand, within HER17_RS08690at 1907.991 kb on - strand, within HER17_RS08690at 1908.045 kb on + strand, within HER17_RS08690at 1908.045 kb on + strand, within HER17_RS08690at 1908.116 kb on + strand, within HER17_RS08690at 1908.116 kb on + strand, within HER17_RS08690at 1908.117 kb on - strand, within HER17_RS08690at 1908.117 kb on - strand, within HER17_RS08690at 1908.117 kb on - strand, within HER17_RS08690at 1908.117 kb on - strand, within HER17_RS08690at 1908.166 kb on + strand, within HER17_RS08690at 1908.193 kb on + strand, within HER17_RS08690at 1908.193 kb on + strand, within HER17_RS08690at 1908.199 kb on + strand, within HER17_RS08690at 1908.332 kb on + strand, within HER17_RS08690at 1908.332 kb on + strand, within HER17_RS08690at 1908.401 kb on - strand, within HER17_RS08690at 1908.401 kb on - strand, within HER17_RS08690at 1908.401 kb on - strand, within HER17_RS08690at 1908.477 kb on + strand, within HER17_RS08690at 1908.477 kb on + strand, within HER17_RS08690at 1908.477 kb on + strand, within HER17_RS08690at 1908.478 kb on - strand, within HER17_RS08690at 1908.488 kb on + strand, within HER17_RS08690at 1908.488 kb on + strand, within HER17_RS08690at 1908.489 kb on - strand, within HER17_RS08690at 1908.500 kb on + strand, within HER17_RS08690at 1908.501 kb on - strand, within HER17_RS08690at 1908.617 kb on - strand, within HER17_RS08690at 1908.697 kb on + strandat 1908.806 kb on - strandat 1908.815 kb on + strandat 1908.816 kb on - strandat 1908.832 kb on - strandat 1908.852 kb on - strandat 1908.967 kb on + strandat 1908.967 kb on + strandat 1908.968 kb on - strandat 1909.001 kb on + strand, within HER17_RS08695at 1909.001 kb on + strand, within HER17_RS08695at 1909.002 kb on - strand, within HER17_RS08695at 1909.002 kb on - strand, within HER17_RS08695at 1909.002 kb on - strand, within HER17_RS08695at 1909.002 kb on - strand, within HER17_RS08695at 1909.002 kb on - strand, within HER17_RS08695at 1909.032 kb on - strand, within HER17_RS08695at 1909.032 kb on - strand, within HER17_RS08695at 1909.070 kb on + strand, within HER17_RS08695at 1909.071 kb on - strand, within HER17_RS08695at 1909.228 kb on + strand, within HER17_RS08695at 1909.228 kb on + strand, within HER17_RS08695at 1909.229 kb on - strand, within HER17_RS08695at 1909.229 kb on - strand, within HER17_RS08695at 1909.229 kb on - strand, within HER17_RS08695at 1909.313 kb on + strand, within HER17_RS08695at 1909.313 kb on + strand, within HER17_RS08695at 1909.313 kb on + strand, within HER17_RS08695at 1909.313 kb on + strand, within HER17_RS08695at 1909.313 kb on + strand, within HER17_RS08695at 1909.313 kb on + strand, within HER17_RS08695at 1909.314 kb on - strand, within HER17_RS08695at 1909.314 kb on - strand, within HER17_RS08695at 1909.314 kb on - strand, within HER17_RS08695at 1909.314 kb on - strand, within HER17_RS08695at 1909.314 kb on - strand, within HER17_RS08695at 1909.314 kb on - strand, within HER17_RS08695at 1909.315 kb on + strand, within HER17_RS08695at 1909.315 kb on + strand, within HER17_RS08695at 1909.315 kb on + strand, within HER17_RS08695at 1909.315 kb on + strand, within HER17_RS08695at 1909.315 kb on + strand, within HER17_RS08695at 1909.315 kb on + strand, within HER17_RS08695at 1909.315 kb on + strand, within HER17_RS08695at 1909.316 kb on - strand, within HER17_RS08695at 1909.316 kb on - strand, within HER17_RS08695at 1909.316 kb on - strand, within HER17_RS08695at 1909.317 kb on + strand, within HER17_RS08695at 1909.318 kb on - strand, within HER17_RS08695at 1909.318 kb on - strand, within HER17_RS08695at 1909.318 kb on - strand, within HER17_RS08695at 1909.318 kb on - strand, within HER17_RS08695at 1909.318 kb on - strand, within HER17_RS08695at 1909.318 kb on - strand, within HER17_RS08695at 1909.524 kb on + strand, within HER17_RS08695at 1909.524 kb on + strand, within HER17_RS08695at 1909.525 kb on - strand, within HER17_RS08695at 1909.713 kb on + strandat 1909.730 kb on - strandat 1909.807 kb on + strandat 1909.807 kb on + strandat 1909.808 kb on - strandat 1909.808 kb on - strandat 1909.808 kb on - strandat 1909.808 kb on - strandat 1909.811 kb on + strandat 1909.811 kb on + strandat 1909.811 kb on + strandat 1909.811 kb on + strandat 1909.811 kb on + strandat 1909.811 kb on + strandat 1909.812 kb on - strandat 1909.812 kb on - strandat 1909.812 kb on - strandat 1909.812 kb on - strandat 1909.812 kb on - strandat 1909.812 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,906,495 - HER17_RS08685 0.26 -0.1
1,906,510 + HER17_RS08685 0.28 -0.1
1,906,588 + HER17_RS08685 0.38 +0.7
1,906,589 - HER17_RS08685 0.38 +0.2
1,906,642 - HER17_RS08685 0.44 +0.4
1,906,677 + HER17_RS08685 0.49 +0.5
1,906,678 - HER17_RS08685 0.49 -0.2
1,906,698 + HER17_RS08685 0.51 -0.1
1,906,698 + HER17_RS08685 0.51 -1.9
1,906,698 + HER17_RS08685 0.51 -0.5
1,906,804 + HER17_RS08685 0.65 +0.2
1,906,804 + HER17_RS08685 0.65 +0.4
1,906,804 + HER17_RS08685 0.65 +0.2
1,906,804 + HER17_RS08685 0.65 +0.3
1,906,804 + HER17_RS08685 0.65 +0.1
1,906,804 + HER17_RS08685 0.65 -0.5
1,906,804 + HER17_RS08685 0.65 -0.2
1,906,805 - HER17_RS08685 0.65 +0.3
1,906,805 - HER17_RS08685 0.65 -0.1
1,906,805 - HER17_RS08685 0.65 -0.6
1,906,805 - HER17_RS08685 0.65 -0.5
1,906,805 - HER17_RS08685 0.65 -0.2
1,906,806 + HER17_RS08685 0.65 +0.7
1,906,807 - HER17_RS08685 0.65 -1.1
1,906,954 + HER17_RS08685 0.83 -0.4
1,906,955 - HER17_RS08685 0.84 +0.3
1,906,955 - HER17_RS08685 0.84 +0.1
1,906,955 - HER17_RS08685 0.84 -1.0
1,906,955 - HER17_RS08685 0.84 -0.2
1,906,959 - HER17_RS08685 0.84 +0.3
1,906,976 - HER17_RS08685 0.86 +0.3
1,906,976 - HER17_RS08685 0.86 -1.5
1,906,976 - HER17_RS08685 0.86 +0.4
1,907,084 - +1.1
1,907,120 - -0.6
1,907,348 + -2.2
1,907,348 + -1.8
1,907,349 - -0.0
1,907,349 - +0.0
1,907,349 - +0.6
1,907,349 - +1.1
1,907,349 - -1.0
1,907,350 + -1.0
1,907,350 + +0.8
1,907,350 + -1.0
1,907,351 - +0.5
1,907,351 - -0.5
1,907,357 + +0.8
1,907,366 + +0.1
1,907,376 - +0.5
1,907,379 - -0.4
1,907,398 + +0.6
1,907,398 + +0.1
1,907,399 - +0.1
1,907,399 - +0.1
1,907,434 - +0.9
1,907,437 + +0.3
1,907,437 + -1.6
1,907,437 + -0.7
1,907,438 - -1.0
1,907,438 - -0.1
1,907,438 - -1.9
1,907,510 - -0.3
1,907,614 + HER17_RS08690 0.15 -0.7
1,907,614 + HER17_RS08690 0.15 -0.3
1,907,617 + HER17_RS08690 0.15 +0.1
1,907,654 + HER17_RS08690 0.18 +1.3
1,907,655 - HER17_RS08690 0.18 +0.2
1,907,675 - HER17_RS08690 0.19 -0.3
1,907,701 + HER17_RS08690 0.21 -0.6
1,907,702 - HER17_RS08690 0.21 +0.8
1,907,706 + HER17_RS08690 0.21 +0.0
1,907,786 + HER17_RS08690 0.27 -0.6
1,907,787 - HER17_RS08690 0.27 -0.6
1,907,787 - HER17_RS08690 0.27 -0.3
1,907,788 + HER17_RS08690 0.27 +0.1
1,907,788 + HER17_RS08690 0.27 +0.8
1,907,788 + HER17_RS08690 0.27 +0.1
1,907,789 - HER17_RS08690 0.27 +0.4
1,907,789 - HER17_RS08690 0.27 -0.5
1,907,789 - HER17_RS08690 0.27 +0.6
1,907,789 - HER17_RS08690 0.27 +0.0
1,907,789 - HER17_RS08690 0.27 +0.3
1,907,804 + HER17_RS08690 0.28 +0.5
1,907,926 + HER17_RS08690 0.37 +0.2
1,907,940 + HER17_RS08690 0.38 -0.3
1,907,990 + HER17_RS08690 0.41 +0.2
1,907,991 - HER17_RS08690 0.41 +0.5
1,907,991 - HER17_RS08690 0.41 -0.9
1,907,991 - HER17_RS08690 0.41 -0.5
1,908,045 + HER17_RS08690 0.45 -0.1
1,908,045 + HER17_RS08690 0.45 -0.1
1,908,116 + HER17_RS08690 0.50 +0.5
1,908,116 + HER17_RS08690 0.50 +0.4
1,908,117 - HER17_RS08690 0.50 -0.1
1,908,117 - HER17_RS08690 0.50 +0.2
1,908,117 - HER17_RS08690 0.50 -0.5
1,908,117 - HER17_RS08690 0.50 -0.8
1,908,166 + HER17_RS08690 0.53 -1.0
1,908,193 + HER17_RS08690 0.55 +0.0
1,908,193 + HER17_RS08690 0.55 -0.0
1,908,199 + HER17_RS08690 0.56 +0.5
1,908,332 + HER17_RS08690 0.65 -0.3
1,908,332 + HER17_RS08690 0.65 -0.4
1,908,401 - HER17_RS08690 0.70 -0.5
1,908,401 - HER17_RS08690 0.70 -0.7
1,908,401 - HER17_RS08690 0.70 -0.7
1,908,477 + HER17_RS08690 0.75 +0.4
1,908,477 + HER17_RS08690 0.75 -1.7
1,908,477 + HER17_RS08690 0.75 +0.4
1,908,478 - HER17_RS08690 0.75 +0.8
1,908,488 + HER17_RS08690 0.76 +0.6
1,908,488 + HER17_RS08690 0.76 +0.4
1,908,489 - HER17_RS08690 0.76 +0.3
1,908,500 + HER17_RS08690 0.77 -0.2
1,908,501 - HER17_RS08690 0.77 +0.3
1,908,617 - HER17_RS08690 0.85 +0.4
1,908,697 + +1.1
1,908,806 - -0.4
1,908,815 + -0.1
1,908,816 - +0.2
1,908,832 - +0.1
1,908,852 - +0.8
1,908,967 + -0.2
1,908,967 + +0.0
1,908,968 - +0.5
1,909,001 + HER17_RS08695 0.14 -0.3
1,909,001 + HER17_RS08695 0.14 -0.1
1,909,002 - HER17_RS08695 0.14 +1.0
1,909,002 - HER17_RS08695 0.14 -0.5
1,909,002 - HER17_RS08695 0.14 +0.1
1,909,002 - HER17_RS08695 0.14 -0.2
1,909,002 - HER17_RS08695 0.14 -0.5
1,909,032 - HER17_RS08695 0.17 +0.0
1,909,032 - HER17_RS08695 0.17 +0.5
1,909,070 + HER17_RS08695 0.22 -0.1
1,909,071 - HER17_RS08695 0.22 +1.1
1,909,228 + HER17_RS08695 0.42 -0.0
1,909,228 + HER17_RS08695 0.42 +0.8
1,909,229 - HER17_RS08695 0.42 -0.7
1,909,229 - HER17_RS08695 0.42 +0.0
1,909,229 - HER17_RS08695 0.42 +0.6
1,909,313 + HER17_RS08695 0.53 -1.3
1,909,313 + HER17_RS08695 0.53 -0.8
1,909,313 + HER17_RS08695 0.53 +1.5
1,909,313 + HER17_RS08695 0.53 -0.6
1,909,313 + HER17_RS08695 0.53 +0.5
1,909,313 + HER17_RS08695 0.53 -1.3
1,909,314 - HER17_RS08695 0.53 +1.3
1,909,314 - HER17_RS08695 0.53 -0.4
1,909,314 - HER17_RS08695 0.53 -0.2
1,909,314 - HER17_RS08695 0.53 -0.4
1,909,314 - HER17_RS08695 0.53 -0.2
1,909,314 - HER17_RS08695 0.53 +1.2
1,909,315 + HER17_RS08695 0.53 +0.5
1,909,315 + HER17_RS08695 0.53 +0.3
1,909,315 + HER17_RS08695 0.53 -0.6
1,909,315 + HER17_RS08695 0.53 +0.5
1,909,315 + HER17_RS08695 0.53 +0.4
1,909,315 + HER17_RS08695 0.53 -1.3
1,909,315 + HER17_RS08695 0.53 +1.5
1,909,316 - HER17_RS08695 0.53 -1.1
1,909,316 - HER17_RS08695 0.53 -1.8
1,909,316 - HER17_RS08695 0.53 +0.2
1,909,317 + HER17_RS08695 0.53 -0.7
1,909,318 - HER17_RS08695 0.53 -0.2
1,909,318 - HER17_RS08695 0.53 -0.6
1,909,318 - HER17_RS08695 0.53 -0.3
1,909,318 - HER17_RS08695 0.53 +1.5
1,909,318 - HER17_RS08695 0.53 -0.5
1,909,318 - HER17_RS08695 0.53 +0.6
1,909,524 + HER17_RS08695 0.79 -0.0
1,909,524 + HER17_RS08695 0.79 -0.5
1,909,525 - HER17_RS08695 0.79 +1.1
1,909,713 + -0.8
1,909,730 - +1.3
1,909,807 + +0.3
1,909,807 + +0.4
1,909,808 - +0.2
1,909,808 - +0.1
1,909,808 - +0.2
1,909,808 - -0.2
1,909,811 + +0.6
1,909,811 + +0.3
1,909,811 + +0.8
1,909,811 + +1.8
1,909,811 + -0.6
1,909,811 + -0.9
1,909,812 - -0.1
1,909,812 - -0.3
1,909,812 - +0.9
1,909,812 - +0.5
1,909,812 - -0.2
1,909,812 - -0.0

Or see this region's nucleotide sequence