Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS08515 and HER17_RS08520 are separated by 83 nucleotides HER17_RS08520 and HER17_RS08525 are separated by 155 nucleotides HER17_RS08525 and HER17_RS08530 are separated by 158 nucleotides HER17_RS08530 and HER17_RS08535 are separated by 851 nucleotides
HER17_RS08515: HER17_RS08515 - DUF523 domain-containing protein, at 1,871,722 to 1,872,228
_RS08515
HER17_RS08520: HER17_RS08520 - GhoT/OrtT family toxin, at 1,872,312 to 1,872,497
_RS08520
HER17_RS08525: HER17_RS08525 - hypothetical protein, at 1,872,653 to 1,872,952
_RS08525
HER17_RS08530: HER17_RS08530 - hypothetical protein, at 1,873,111 to 1,873,392
_RS08530
HER17_RS08535: HER17_RS08535 - methyl-accepting chemotaxis protein, at 1,874,244 to 1,875,908
_RS08535
Position (kb) 1873
1874 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1872.111 kb on + strand, within HER17_RS08515 at 1872.179 kb on + strand at 1872.222 kb on + strand at 1872.245 kb on + strand at 1872.246 kb on - strand at 1872.258 kb on + strand at 1872.258 kb on + strand at 1872.258 kb on + strand at 1872.295 kb on - strand at 1872.295 kb on - strand at 1872.295 kb on - strand at 1872.301 kb on + strand at 1872.302 kb on - strand at 1872.370 kb on - strand, within HER17_RS08520 at 1872.372 kb on + strand, within HER17_RS08520 at 1872.414 kb on + strand, within HER17_RS08520 at 1872.415 kb on - strand, within HER17_RS08520 at 1872.458 kb on - strand, within HER17_RS08520 at 1872.461 kb on + strand, within HER17_RS08520 at 1872.512 kb on - strand at 1872.533 kb on + strand at 1872.534 kb on - strand at 1872.605 kb on + strand at 1872.606 kb on - strand at 1872.613 kb on - strand at 1872.613 kb on - strand at 1872.615 kb on + strand at 1872.615 kb on + strand at 1872.615 kb on + strand at 1872.621 kb on + strand at 1872.624 kb on + strand at 1872.710 kb on - strand, within HER17_RS08525 at 1872.715 kb on + strand, within HER17_RS08525 at 1872.715 kb on + strand, within HER17_RS08525 at 1872.716 kb on - strand, within HER17_RS08525 at 1872.716 kb on - strand, within HER17_RS08525 at 1872.716 kb on - strand, within HER17_RS08525 at 1872.812 kb on + strand, within HER17_RS08525 at 1872.812 kb on + strand, within HER17_RS08525 at 1872.832 kb on + strand, within HER17_RS08525 at 1872.890 kb on + strand, within HER17_RS08525 at 1872.946 kb on + strand at 1872.950 kb on + strand at 1873.062 kb on - strand at 1873.368 kb on + strand at 1873.466 kb on + strand at 1873.512 kb on - strand at 1873.772 kb on + strand at 1873.858 kb on + strand at 1873.858 kb on + strand at 1873.858 kb on + strand at 1873.913 kb on + strand at 1873.913 kb on + strand at 1873.913 kb on + strand at 1873.914 kb on - strand at 1873.914 kb on - strand at 1874.081 kb on + strand at 1874.082 kb on - strand at 1874.114 kb on - strand at 1874.169 kb on + strand at 1874.212 kb on - strand at 1874.266 kb on + strand at 1874.266 kb on + strand at 1874.267 kb on - strand at 1874.317 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 1,872,111 + HER17_RS08515 0.77 -0.3 1,872,179 + +0.3 1,872,222 + +0.1 1,872,245 + +0.1 1,872,246 - -0.1 1,872,258 + +0.3 1,872,258 + -0.3 1,872,258 + +0.5 1,872,295 - -0.7 1,872,295 - +0.5 1,872,295 - +0.1 1,872,301 + -1.0 1,872,302 - -0.3 1,872,370 - HER17_RS08520 0.31 +0.2 1,872,372 + HER17_RS08520 0.32 +0.5 1,872,414 + HER17_RS08520 0.55 +0.3 1,872,415 - HER17_RS08520 0.55 -0.5 1,872,458 - HER17_RS08520 0.78 -0.6 1,872,461 + HER17_RS08520 0.80 +0.8 1,872,512 - +0.1 1,872,533 + +0.1 1,872,534 - -0.4 1,872,605 + -0.5 1,872,606 - +0.3 1,872,613 - +0.0 1,872,613 - +0.8 1,872,615 + -0.4 1,872,615 + +0.2 1,872,615 + +0.2 1,872,621 + +0.1 1,872,624 + +0.7 1,872,710 - HER17_RS08525 0.19 -1.0 1,872,715 + HER17_RS08525 0.21 +0.1 1,872,715 + HER17_RS08525 0.21 -0.3 1,872,716 - HER17_RS08525 0.21 -0.2 1,872,716 - HER17_RS08525 0.21 +0.5 1,872,716 - HER17_RS08525 0.21 +0.6 1,872,812 + HER17_RS08525 0.53 +0.1 1,872,812 + HER17_RS08525 0.53 +0.7 1,872,832 + HER17_RS08525 0.60 -0.8 1,872,890 + HER17_RS08525 0.79 +0.5 1,872,946 + -0.3 1,872,950 + +0.5 1,873,062 - -0.2 1,873,368 + +0.7 1,873,466 + +1.8 1,873,512 - -2.2 1,873,772 + +0.6 1,873,858 + -0.3 1,873,858 + +0.2 1,873,858 + +0.0 1,873,913 + -0.6 1,873,913 + +0.0 1,873,913 + +0.2 1,873,914 - -1.4 1,873,914 - +0.3 1,874,081 + +0.2 1,874,082 - +0.8 1,874,114 - -0.8 1,874,169 + +0.6 1,874,212 - -1.3 1,874,266 + -1.3 1,874,266 + +0.4 1,874,267 - +0.1 1,874,317 + +0.3
Or see this region's nucleotide sequence