Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08420

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,855,733	-				-0.4
1,855,742	+				+0.1
1,855,742	+				+2.7
1,855,777	+				+0.8
1,855,786	-				-0.3
1,855,810	+				+0.4
1,855,810	+				-0.2
1,855,810	+				-0.1
1,855,812	+				-0.4
1,855,812	+				-0.1
1,855,813	-				+0.6
1,855,837	-				+0.9
1,855,837	-				-0.0
1,855,866	+				+0.3
1,855,902	+				-0.1
1,856,042	+		HER17_RS08415	0.10	-0.1
1,856,077	+		HER17_RS08415	0.18	-0.1
1,856,116	-		HER17_RS08415	0.27	-0.6
1,856,129	-		HER17_RS08415	0.29	+0.5
1,856,129	-		HER17_RS08415	0.29	+0.3
1,856,129	-		HER17_RS08415	0.29	+0.2
1,856,176	+		HER17_RS08415	0.40	-0.9
1,856,176	+		HER17_RS08415	0.40	-0.8
1,856,258	-		HER17_RS08415	0.58	-0.7
1,856,286	-		HER17_RS08415	0.64	-2.1
1,856,337	+		HER17_RS08415	0.75	+0.3
1,856,338	-		HER17_RS08415	0.75	-0.7
1,856,388	-		HER17_RS08415	0.86	-0.6
1,856,392	+		HER17_RS08415	0.87	+0.1
1,856,423	-				-0.4
1,856,491	+				+0.2
1,856,492	-				-1.5
1,856,626	-				-0.2
1,856,626	-				+0.7
1,856,646	-				+0.3
1,856,843	-		HER17_RS08420	0.22	+0.5
1,856,843	-		HER17_RS08420	0.22	+0.4
1,856,843	-		HER17_RS08420	0.22	+0.4
1,856,923	+		HER17_RS08420	0.29	-0.1
1,856,923	+		HER17_RS08420	0.29	-2.2
1,857,209	-		HER17_RS08420	0.55	-0.0
1,857,322	+		HER17_RS08420	0.66	-1.1
1,857,323	-		HER17_RS08420	0.66	+0.1
1,857,323	-		HER17_RS08420	0.66	-0.4
1,857,323	-		HER17_RS08420	0.66	-0.0
1,857,323	-		HER17_RS08420	0.66	+0.1
1,857,405	+		HER17_RS08420	0.73	-1.7
1,857,406	-		HER17_RS08420	0.74	+0.3
1,857,406	-		HER17_RS08420	0.74	-0.3
1,857,417	-		HER17_RS08420	0.75	+0.3
1,857,417	-		HER17_RS08420	0.75	-0.1
1,857,427	+		HER17_RS08420	0.76	+0.3
1,857,428	-		HER17_RS08420	0.76	+0.5
1,857,428	-		HER17_RS08420	0.76	-0.2
1,857,472	+		HER17_RS08420	0.80	+0.2
1,857,570	-		HER17_RS08420	0.89	+0.6
1,857,608	-				-0.4
1,857,614	+				-2.3
1,857,653	+				+0.8
1,857,654	-				+0.4
1,857,654	-				+0.5
1,857,678	-				+0.0
1,857,740	+				+0.2
1,857,741	-				+0.1
1,857,781	+				+0.6
1,857,781	+				+0.3
1,857,782	-				+0.6
1,857,785	+				+0.8
1,857,786	-				+0.4
1,857,786	-				-0.2
1,857,812	+				+0.7
1,857,812	+				+0.4
1,857,814	+				-0.4
1,857,814	+				-0.3
1,857,836	+				+1.6
1,857,862	+				-0.9
1,857,863	-				-0.3
1,857,868	+				+0.2
1,857,869	-				+1.1
1,857,869	-				-0.2
1,857,880	+				-0.7
1,857,881	-				+0.7
1,857,881	-				-1.3
1,857,881	-				+0.8
1,857,888	-				+1.8
1,857,907	+				+0.2
1,857,907	+				+0.2
1,857,908	-				-0.2
1,857,908	-				+0.3
1,857,911	+				-0.1
1,857,911	+				+0.1
1,857,911	+				+0.0
1,857,911	+				+0.1
1,857,911	+				-0.0
1,857,911	+				+0.3
1,857,911	+				-0.7
1,857,911	+				-1.0
1,857,911	+				-0.5
1,857,912	-				-0.1
1,857,912	-				-0.1
1,857,912	-				+0.2
1,857,912	-				+1.3
1,857,925	+				+0.3
1,857,925	+				-0.3
1,857,925	+				+0.8
1,857,925	+				+0.0
1,857,925	+				-1.6
1,857,925	+				-0.4
1,857,926	-				+0.1
1,857,928	+				-0.2
1,857,928	+				+0.8
1,857,948	+				-0.2
1,857,957	+				+0.2
1,857,957	+				+0.0
1,857,957	+				+0.8
1,857,957	+				+1.1
1,857,964	-				+0.5
1,857,970	+				-0.4
1,857,971	-				-0.5
1,858,052	+				-1.3
1,858,056	+				-0.4
1,858,057	-				-0.2
1,858,082	-				+0.3
1,858,100	-				+0.2
1,858,102	-				-1.8
1,858,143	+		HER17_RS08425	0.17	+0.5
1,858,143	+		HER17_RS08425	0.17	-0.0
1,858,143	+		HER17_RS08425	0.17	-1.0
1,858,143	+		HER17_RS08425	0.17	-0.2
1,858,143	+		HER17_RS08425	0.17	-0.0
1,858,143	+		HER17_RS08425	0.17	+0.3
1,858,144	-		HER17_RS08425	0.18	-0.4
1,858,147	+		HER17_RS08425	0.18	-0.4
1,858,147	+		HER17_RS08425	0.18	-0.2
1,858,147	+		HER17_RS08425	0.18	-1.0
1,858,218	-		HER17_RS08425	0.32	-0.2
1,858,218	-		HER17_RS08425	0.32	-0.4
1,858,271	-		HER17_RS08425	0.43	-0.4
1,858,371	-		HER17_RS08425	0.62	-0.4
1,858,403	+		HER17_RS08425	0.69	+0.5
1,858,404	-		HER17_RS08425	0.69	+0.1
1,858,416	-		HER17_RS08425	0.71	+0.4
1,858,465	+		HER17_RS08425	0.81	+0.8
1,858,466	-		HER17_RS08425	0.81	+0.3
1,858,555	+				-2.2
1,858,561	+				-0.7
1,858,571	+				+0.2
1,858,572	-				-0.3
1,858,672	+				+0.6