Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08215

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,812,446	+		HER17_RS08210	0.46	-1.1
1,812,447	-		HER17_RS08210	0.46	+0.7
1,812,476	-		HER17_RS08210	0.48	-1.0
1,812,485	+		HER17_RS08210	0.48	+0.1
1,812,486	-		HER17_RS08210	0.48	+0.2
1,812,486	-		HER17_RS08210	0.48	+0.7
1,812,717	+		HER17_RS08210	0.62	+0.1
1,812,725	+		HER17_RS08210	0.62	+0.3
1,812,728	+		HER17_RS08210	0.63	+0.1
1,812,728	+		HER17_RS08210	0.63	-0.8
1,812,746	+		HER17_RS08210	0.64	-0.4
1,812,755	+		HER17_RS08210	0.64	-0.2
1,812,762	+		HER17_RS08210	0.65	-0.8
1,812,909	-		HER17_RS08210	0.73	+0.0
1,812,917	+		HER17_RS08210	0.74	-0.4
1,812,926	+		HER17_RS08210	0.74	-0.0
1,812,960	-		HER17_RS08210	0.76	+0.1
1,813,052	+		HER17_RS08210	0.82	-0.5
1,813,052	+		HER17_RS08210	0.82	+1.0
1,813,052	+		HER17_RS08210	0.82	-0.0
1,813,052	+		HER17_RS08210	0.82	+0.6
1,813,052	+		HER17_RS08210	0.82	-0.3
1,813,055	+		HER17_RS08210	0.82	+0.0
1,813,181	+		HER17_RS08210	0.89	-0.2
1,813,184	+		HER17_RS08210	0.89	+0.2
1,813,205	+				+0.9
1,813,287	+				+0.3
1,813,287	+				-0.4
1,813,287	+				-0.1
1,813,288	-				-0.7
1,813,290	+				-1.3
1,813,290	+				+1.0
1,813,290	+				-0.5
1,813,356	-				+0.9
1,813,359	+				-0.2
1,813,372	+				+0.2
1,813,372	+				-0.1
1,813,389	+				+0.5
1,813,404	+				-0.0
1,813,407	+				-0.2
1,813,408	-				-0.6
1,813,428	+				-0.1
1,813,428	+				-0.2
1,813,502	+		HER17_RS08215	0.11	+1.3
1,813,502	+		HER17_RS08215	0.11	-0.0
1,813,502	+		HER17_RS08215	0.11	-0.0
1,813,502	+		HER17_RS08215	0.11	-0.1
1,813,542	+		HER17_RS08215	0.16	-0.1
1,813,542	+		HER17_RS08215	0.16	-0.2
1,813,542	+		HER17_RS08215	0.16	+1.0
1,813,591	-		HER17_RS08215	0.21	-1.8
1,813,608	+		HER17_RS08215	0.23	-0.5
1,813,608	+		HER17_RS08215	0.23	+1.2
1,813,642	-		HER17_RS08215	0.26	-0.1
1,813,642	-		HER17_RS08215	0.26	-1.1
1,813,785	+		HER17_RS08215	0.41	-0.3
1,813,785	+		HER17_RS08215	0.41	-0.2
1,813,790	-		HER17_RS08215	0.42	-1.2
1,813,852	+		HER17_RS08215	0.48	+1.0
1,813,957	-		HER17_RS08215	0.59	-0.6
1,814,169	+		HER17_RS08215	0.81	-0.1
1,814,228	+		HER17_RS08215	0.88	+0.1
1,814,228	+		HER17_RS08215	0.88	-0.2
1,814,235	+		HER17_RS08215	0.88	+1.3
1,814,246	-		HER17_RS08215	0.89	-1.0
1,814,246	-		HER17_RS08215	0.89	-1.0
1,814,263	+				-0.3
1,814,263	+				-0.7
1,814,263	+				+0.4
1,814,263	+				+0.1
1,814,296	+				+0.6
1,814,298	+				+1.0
1,814,344	+				-0.4
1,814,390	-				+0.3
1,814,435	-				-1.3
1,814,506	+				+0.2
1,814,506	+				+0.4
1,814,513	+				-0.6
1,814,524	+				-0.3
1,814,534	-				-0.7
1,814,596	+				+1.2
1,814,599	-				+1.4
1,814,604	+				-1.3
1,814,615	-				+0.6
1,814,638	+				+0.5
1,814,638	+				+0.1
1,814,650	-				+0.0
1,814,654	-				-0.2
1,814,654	-				-0.4
1,814,654	-				-0.2
1,814,702	-				-0.7
1,814,703	+				+0.5
1,814,705	+				+1.5
1,814,772	+				-0.6
1,814,773	-				+0.2
1,814,805	+		HER17_RS08220	0.11	-0.1
1,814,814	+		HER17_RS08220	0.13	+0.1
1,814,898	+		HER17_RS08220	0.23	-0.9
1,814,899	-		HER17_RS08220	0.23	-1.0
1,814,899	-		HER17_RS08220	0.23	-0.3
1,814,928	+		HER17_RS08220	0.27	-1.4
1,815,038	-		HER17_RS08220	0.41	-0.7
1,815,038	-		HER17_RS08220	0.41	-1.1
1,815,038	-		HER17_RS08220	0.41	+0.5
1,815,038	-		HER17_RS08220	0.41	+0.2
1,815,088	-		HER17_RS08220	0.47	-0.1
1,815,097	-		HER17_RS08220	0.49	+0.5
1,815,097	-		HER17_RS08220	0.49	-0.1
1,815,129	+		HER17_RS08220	0.53	-0.9
1,815,219	-		HER17_RS08220	0.64	+1.3
1,815,267	+		HER17_RS08220	0.70	-0.2
1,815,267	+		HER17_RS08220	0.70	-0.0
1,815,276	+		HER17_RS08220	0.71	-0.0
1,815,277	-		HER17_RS08220	0.72	+0.7
1,815,277	-		HER17_RS08220	0.72	+0.2
1,815,277	-		HER17_RS08220	0.72	-0.9
1,815,279	+		HER17_RS08220	0.72	-1.3
1,815,288	+		HER17_RS08220	0.73	+0.3
1,815,288	+		HER17_RS08220	0.73	+0.7
1,815,288	+		HER17_RS08220	0.73	-0.1
1,815,289	-		HER17_RS08220	0.73	+0.4
1,815,314	+		HER17_RS08220	0.76	+0.4
1,815,314	+		HER17_RS08220	0.76	-0.1
1,815,314	+		HER17_RS08220	0.76	-0.1
1,815,315	-		HER17_RS08220	0.76	+1.4