Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS07235

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,605,014	-		HER17_RS07230	0.25	+0.0
1,605,240	+		HER17_RS07230	0.42	-1.0
1,605,306	-		HER17_RS07230	0.47	-0.3
1,605,415	-		HER17_RS07230	0.56	+0.9
1,605,479	+		HER17_RS07230	0.61	+0.4
1,605,479	+		HER17_RS07230	0.61	+1.5
1,605,480	-		HER17_RS07230	0.61	+0.9
1,605,546	+		HER17_RS07230	0.66	+0.2
1,605,547	-		HER17_RS07230	0.66	-0.1
1,605,547	-		HER17_RS07230	0.66	+1.1
1,605,547	-		HER17_RS07230	0.66	-0.3
1,605,590	-		HER17_RS07230	0.69	-1.2
1,605,651	+		HER17_RS07230	0.74	+0.3
1,605,667	+		HER17_RS07230	0.75	+0.1
1,605,667	+		HER17_RS07230	0.75	-0.5
1,605,667	+		HER17_RS07230	0.75	-1.5
1,605,667	+		HER17_RS07230	0.75	-0.1
1,605,667	+		HER17_RS07230	0.75	+0.1
1,605,668	-		HER17_RS07230	0.75	-0.2
1,605,668	-		HER17_RS07230	0.75	+0.2
1,605,668	-		HER17_RS07230	0.75	-0.6
1,605,697	+		HER17_RS07230	0.77	+1.4
1,605,698	-		HER17_RS07230	0.77	-1.4
1,605,933	+				+0.3
1,605,933	+				-0.1
1,605,950	+				+0.0
1,605,950	+				-0.5
1,605,950	+				+0.3
1,605,950	+				-0.1
1,605,951	-				+0.8
1,605,951	-				-1.1
1,605,972	+				-0.3
1,605,972	+				-0.2
1,605,973	-				+0.5
1,606,034	-				+0.5
1,606,080	+		HER17_RS07235	0.14	+0.6
1,606,082	+		HER17_RS07235	0.14	+0.3
1,606,083	-		HER17_RS07235	0.14	+0.3
1,606,085	+		HER17_RS07235	0.15	+0.3
1,606,085	+		HER17_RS07235	0.15	-0.5
1,606,085	+		HER17_RS07235	0.15	-0.5
1,606,086	-		HER17_RS07235	0.15	+1.2
1,606,086	-		HER17_RS07235	0.15	-0.1
1,606,086	-		HER17_RS07235	0.15	+0.2
1,606,086	-		HER17_RS07235	0.15	+0.5
1,606,086	-		HER17_RS07235	0.15	+0.1
1,606,130	+		HER17_RS07235	0.24	+0.2
1,606,243	+		HER17_RS07235	0.46	-0.1
1,606,244	-		HER17_RS07235	0.47	-0.1
1,606,269	+		HER17_RS07235	0.51	-0.2
1,606,275	-		HER17_RS07235	0.53	+0.3
1,606,308	-		HER17_RS07235	0.59	-0.2
1,606,340	+		HER17_RS07235	0.66	-0.1
1,606,340	+		HER17_RS07235	0.66	-0.3
1,606,340	+		HER17_RS07235	0.66	-0.5
1,606,349	+		HER17_RS07235	0.67	-0.4
1,606,349	+		HER17_RS07235	0.67	+0.2
1,606,350	-		HER17_RS07235	0.68	-0.0
1,606,350	-		HER17_RS07235	0.68	+0.3
1,606,350	-		HER17_RS07235	0.68	-0.1
1,606,350	-		HER17_RS07235	0.68	+0.1
1,606,492	+				-0.1
1,606,492	+				+0.3
1,606,493	-				-0.4
1,606,493	-				-0.2
1,606,493	-				-0.4
1,606,507	+				-0.5
1,606,507	+				+0.4
1,606,555	-				-0.2
1,606,555	-				+0.3
1,606,555	-				+0.2
1,606,591	-		HER17_RS07240	0.13	+0.3
1,606,591	-		HER17_RS07240	0.13	-0.0
1,606,604	-		HER17_RS07240	0.15	+0.1
1,606,804	+		HER17_RS07240	0.47	+0.3
1,606,804	+		HER17_RS07240	0.47	-0.3
1,606,804	+		HER17_RS07240	0.47	+0.5
1,606,928	-		HER17_RS07240	0.67	-0.3
1,606,942	+		HER17_RS07240	0.69	-0.3
1,606,943	-		HER17_RS07240	0.69	+0.1
1,606,943	-		HER17_RS07240	0.69	+1.1
1,607,011	+		HER17_RS07240	0.80	-0.7
1,607,011	+		HER17_RS07240	0.80	-0.7
1,607,093	+				-0.2
1,607,093	+				+0.7
1,607,093	+				-0.2
1,607,093	+				+0.0
1,607,093	+				+0.6
1,607,094	-				+0.1
1,607,199	-				-0.5
1,607,221	+				+0.3
1,607,228	+				-0.3
1,607,228	+				+0.4
1,607,229	-				-0.2
1,607,229	-				-0.2
1,607,243	+				-0.8
1,607,243	+				-0.6
1,607,244	-				+1.0
1,607,244	-				+1.3
1,607,244	-				-0.3
1,607,250	+				-1.2
1,607,251	-				-0.3
1,607,251	-				+0.9
1,607,271	+				+0.3
1,607,271	+				-0.1
1,607,272	-				-0.0
1,607,339	+				-0.7
1,607,339	+				-0.6
1,607,339	+				-1.4
1,607,340	-				+0.5
1,607,340	-				-0.0
1,607,366	+		HER17_RS07245	0.14	+1.0
1,607,367	-		HER17_RS07245	0.14	+0.9
1,607,372	-		HER17_RS07245	0.16	-0.6
1,607,433	+		HER17_RS07245	0.28	+0.7
1,607,434	-		HER17_RS07245	0.29	-0.0
1,607,434	-		HER17_RS07245	0.29	-0.3
1,607,461	-		HER17_RS07245	0.34	-0.1