Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06025

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,337,832	+				-0.4
1,337,832	+				+0.0
1,337,842	+				-0.2
1,337,927	+				-0.7
1,337,927	+				-1.0
1,337,928	-				-1.5
1,337,928	-				-0.5
1,337,950	+				+0.3
1,337,951	-				+0.1
1,337,974	-				-0.3
1,338,134	+		HER17_RS06020	0.47	-0.3
1,338,134	+		HER17_RS06020	0.47	+0.3
1,338,134	+		HER17_RS06020	0.47	-0.1
1,338,134	+		HER17_RS06020	0.47	+0.3
1,338,135	-		HER17_RS06020	0.47	-0.5
1,338,135	-		HER17_RS06020	0.47	+0.9
1,338,135	-		HER17_RS06020	0.47	-0.1
1,338,135	-		HER17_RS06020	0.47	+0.7
1,338,135	-		HER17_RS06020	0.47	-0.6
1,338,135	-		HER17_RS06020	0.47	-0.1
1,338,135	-		HER17_RS06020	0.47	-0.5
1,338,184	-		HER17_RS06020	0.59	+0.1
1,338,184	-		HER17_RS06020	0.59	-0.4
1,338,217	+		HER17_RS06020	0.68	+0.3
1,338,249	+		HER17_RS06020	0.76	+0.1
1,338,315	-				-0.0
1,338,338	+				-0.4
1,338,338	+				-0.1
1,338,415	-				+0.0
1,338,420	+				+0.2
1,338,420	+				+0.2
1,338,420	+				-0.6
1,338,420	+				+0.2
1,338,420	+				+0.5
1,338,421	-				+1.3
1,338,421	-				+0.5
1,338,421	-				-0.2
1,338,421	-				+0.3
1,338,538	+		HER17_RS06025	0.36	-0.5
1,338,539	-		HER17_RS06025	0.36	+0.6
1,338,539	-		HER17_RS06025	0.36	-0.5
1,338,539	-		HER17_RS06025	0.36	+0.7
1,338,631	+		HER17_RS06025	0.65	-0.4
1,338,631	+		HER17_RS06025	0.65	+0.2
1,338,631	+		HER17_RS06025	0.65	-0.0
1,338,632	-		HER17_RS06025	0.65	-1.3
1,338,632	-		HER17_RS06025	0.65	+0.8
1,338,632	-		HER17_RS06025	0.65	+0.7
1,338,632	-		HER17_RS06025	0.65	+0.3
1,338,684	+		HER17_RS06025	0.81	+0.1
1,338,684	+		HER17_RS06025	0.81	+0.4
1,338,810	-				+0.2
1,338,810	-				-0.2
1,338,822	+				+2.3
1,338,823	-				-0.0
1,338,823	-				+0.8
1,338,823	-				-0.4
1,338,828	-				-0.2
1,338,828	-				+1.5
1,338,828	-				-0.1
1,338,852	+				-0.4
1,339,023	+		HER17_RS06030	0.40	+0.0
1,339,023	+		HER17_RS06030	0.40	-0.7
1,339,023	+		HER17_RS06030	0.40	-0.1
1,339,023	+		HER17_RS06030	0.40	+0.9
1,339,023	+		HER17_RS06030	0.40	-0.1
1,339,023	+		HER17_RS06030	0.40	-0.1
1,339,024	-		HER17_RS06030	0.40	+0.7
1,339,024	-		HER17_RS06030	0.40	+0.3
1,339,024	-		HER17_RS06030	0.40	+1.2
1,339,024	-		HER17_RS06030	0.40	-1.0
1,339,025	+		HER17_RS06030	0.40	+0.4
1,339,025	+		HER17_RS06030	0.40	-0.4
1,339,025	+		HER17_RS06030	0.40	+0.5
1,339,025	+		HER17_RS06030	0.40	+0.1
1,339,026	-		HER17_RS06030	0.40	+0.4
1,339,026	-		HER17_RS06030	0.40	+0.3
1,339,067	+		HER17_RS06030	0.48	-0.3
1,339,067	+		HER17_RS06030	0.48	-0.3
1,339,067	+		HER17_RS06030	0.48	+0.1
1,339,067	+		HER17_RS06030	0.48	-0.8
1,339,068	-		HER17_RS06030	0.49	-1.3
1,339,068	-		HER17_RS06030	0.49	+1.2
1,339,068	-		HER17_RS06030	0.49	+0.7
1,339,211	+		HER17_RS06030	0.76	+0.6
1,339,211	+		HER17_RS06030	0.76	+0.4
1,339,212	-		HER17_RS06030	0.76	-0.2
1,339,212	-		HER17_RS06030	0.76	+1.0
1,339,212	-		HER17_RS06030	0.76	-0.3
1,339,270	+		HER17_RS06030	0.87	-0.4
1,339,271	-		HER17_RS06030	0.88	+0.0
1,339,332	+				+0.5
1,339,332	+				+0.6
1,339,333	-				-0.1
1,339,333	-				+0.3
1,339,333	-				+0.2
1,339,333	-				-3.2
1,339,333	-				+0.5
1,339,333	-				-0.4
1,339,367	+				-1.3
1,339,368	-				-0.8
1,339,368	-				-0.3
1,339,418	-				-0.5
1,339,418	-				-0.0
1,339,418	-				-0.2
1,339,421	-				-0.2
1,339,517	-				-0.1
1,339,629	-		HER17_RS06035	0.12	-0.8
1,339,629	-		HER17_RS06035	0.12	+0.1
1,339,718	-		HER17_RS06035	0.17	-0.8
1,339,718	-		HER17_RS06035	0.17	-1.3
1,339,723	-		HER17_RS06035	0.17	+0.4