Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05615

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS05605 and HER17_RS05610 are separated by 16 nucleotidesHER17_RS05610 and HER17_RS05615 overlap by 8 nucleotidesHER17_RS05615 and HER17_RS05620 are separated by 42 nucleotidesHER17_RS05620 and HER17_RS05625 are separated by 136 nucleotides HER17_RS05605: HER17_RS05605 - Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC, at 1,236,218 to 1,237,015 _RS05605 HER17_RS05610: HER17_RS05610 - Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD, at 1,237,032 to 1,237,958 _RS05610 HER17_RS05615: HER17_RS05615 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 1,237,951 to 1,239,969 _RS05615 HER17_RS05620: HER17_RS05620 - LysE family translocator, at 1,240,012 to 1,240,602 _RS05620 HER17_RS05625: HER17_RS05625 - PLP-dependent aminotransferase family protein, at 1,240,739 to 1,242,199 _RS05625 Position (kb) 1237 1238 1239 1240Strain fitness (log2 ratio) -2 -1 0 1at 1237.013 kb on + strandat 1237.102 kb on + strandat 1237.102 kb on + strandat 1237.102 kb on + strandat 1237.119 kb on + strandat 1237.247 kb on + strand, within HER17_RS05610at 1237.247 kb on + strand, within HER17_RS05610at 1237.247 kb on + strand, within HER17_RS05610at 1237.247 kb on + strand, within HER17_RS05610at 1237.247 kb on + strand, within HER17_RS05610at 1237.248 kb on - strand, within HER17_RS05610at 1237.248 kb on - strand, within HER17_RS05610at 1237.248 kb on - strand, within HER17_RS05610at 1237.248 kb on - strand, within HER17_RS05610at 1237.248 kb on - strand, within HER17_RS05610at 1237.251 kb on + strand, within HER17_RS05610at 1237.251 kb on + strand, within HER17_RS05610at 1237.251 kb on + strand, within HER17_RS05610at 1237.251 kb on + strand, within HER17_RS05610at 1237.251 kb on + strand, within HER17_RS05610at 1237.251 kb on + strand, within HER17_RS05610at 1237.252 kb on - strand, within HER17_RS05610at 1237.252 kb on - strand, within HER17_RS05610at 1237.252 kb on - strand, within HER17_RS05610at 1237.252 kb on - strand, within HER17_RS05610at 1237.252 kb on - strand, within HER17_RS05610at 1237.362 kb on + strand, within HER17_RS05610at 1237.375 kb on - strand, within HER17_RS05610at 1237.403 kb on + strand, within HER17_RS05610at 1237.403 kb on + strand, within HER17_RS05610at 1237.404 kb on - strand, within HER17_RS05610at 1237.404 kb on - strand, within HER17_RS05610at 1237.499 kb on + strand, within HER17_RS05610at 1237.500 kb on - strand, within HER17_RS05610at 1237.575 kb on + strand, within HER17_RS05610at 1237.575 kb on + strand, within HER17_RS05610at 1237.670 kb on + strand, within HER17_RS05610at 1237.678 kb on + strand, within HER17_RS05610at 1237.679 kb on - strand, within HER17_RS05610at 1237.679 kb on - strand, within HER17_RS05610at 1237.718 kb on + strand, within HER17_RS05610at 1237.718 kb on + strand, within HER17_RS05610at 1237.765 kb on + strand, within HER17_RS05610at 1237.765 kb on + strand, within HER17_RS05610at 1237.766 kb on - strand, within HER17_RS05610at 1237.766 kb on - strand, within HER17_RS05610at 1237.766 kb on - strand, within HER17_RS05610at 1237.766 kb on - strand, within HER17_RS05610at 1237.766 kb on - strand, within HER17_RS05610at 1237.788 kb on - strand, within HER17_RS05610at 1237.956 kb on + strandat 1237.956 kb on + strandat 1237.956 kb on + strandat 1238.124 kb on + strandat 1238.125 kb on - strandat 1238.146 kb on + strandat 1238.168 kb on + strand, within HER17_RS05615at 1238.168 kb on + strand, within HER17_RS05615at 1238.169 kb on - strand, within HER17_RS05615at 1238.240 kb on + strand, within HER17_RS05615at 1238.423 kb on + strand, within HER17_RS05615at 1238.424 kb on - strand, within HER17_RS05615at 1238.449 kb on + strand, within HER17_RS05615at 1238.449 kb on + strand, within HER17_RS05615at 1238.455 kb on - strand, within HER17_RS05615at 1238.653 kb on - strand, within HER17_RS05615at 1238.653 kb on - strand, within HER17_RS05615at 1238.653 kb on - strand, within HER17_RS05615at 1238.869 kb on - strand, within HER17_RS05615at 1238.967 kb on + strand, within HER17_RS05615at 1238.997 kb on + strand, within HER17_RS05615at 1238.997 kb on + strand, within HER17_RS05615at 1238.997 kb on + strand, within HER17_RS05615at 1238.997 kb on + strand, within HER17_RS05615at 1239.041 kb on + strand, within HER17_RS05615at 1239.219 kb on - strand, within HER17_RS05615at 1239.294 kb on + strand, within HER17_RS05615at 1239.294 kb on + strand, within HER17_RS05615at 1239.294 kb on + strand, within HER17_RS05615at 1239.295 kb on - strand, within HER17_RS05615at 1239.295 kb on - strand, within HER17_RS05615at 1239.388 kb on - strand, within HER17_RS05615at 1239.388 kb on - strand, within HER17_RS05615at 1239.420 kb on + strand, within HER17_RS05615at 1239.420 kb on + strand, within HER17_RS05615at 1239.420 kb on + strand, within HER17_RS05615at 1239.420 kb on + strand, within HER17_RS05615at 1239.420 kb on + strand, within HER17_RS05615at 1239.421 kb on - strand, within HER17_RS05615at 1239.421 kb on - strand, within HER17_RS05615at 1239.421 kb on - strand, within HER17_RS05615at 1239.447 kb on + strand, within HER17_RS05615at 1239.447 kb on + strand, within HER17_RS05615at 1239.535 kb on + strand, within HER17_RS05615at 1239.535 kb on + strand, within HER17_RS05615at 1239.536 kb on - strand, within HER17_RS05615at 1239.561 kb on - strand, within HER17_RS05615at 1239.564 kb on + strand, within HER17_RS05615at 1239.624 kb on + strand, within HER17_RS05615at 1239.640 kb on - strand, within HER17_RS05615at 1239.732 kb on + strand, within HER17_RS05615at 1239.851 kb on + strandat 1239.851 kb on + strandat 1239.852 kb on - strandat 1239.852 kb on - strandat 1239.852 kb on - strandat 1239.922 kb on - strandat 1239.934 kb on + strandat 1239.943 kb on + strandat 1239.943 kb on + strandat 1239.947 kb on + strandat 1239.947 kb on + strandat 1239.947 kb on + strandat 1239.947 kb on + strandat 1239.948 kb on - strandat 1239.968 kb on - strandat 1239.968 kb on - strandat 1240.153 kb on + strand, within HER17_RS05620at 1240.153 kb on + strand, within HER17_RS05620at 1240.153 kb on + strand, within HER17_RS05620at 1240.153 kb on + strand, within HER17_RS05620at 1240.154 kb on - strand, within HER17_RS05620at 1240.154 kb on - strand, within HER17_RS05620at 1240.220 kb on + strand, within HER17_RS05620at 1240.220 kb on + strand, within HER17_RS05620at 1240.221 kb on - strand, within HER17_RS05620at 1240.221 kb on - strand, within HER17_RS05620at 1240.221 kb on - strand, within HER17_RS05620at 1240.226 kb on - strand, within HER17_RS05620at 1240.276 kb on + strand, within HER17_RS05620at 1240.276 kb on + strand, within HER17_RS05620at 1240.276 kb on + strand, within HER17_RS05620at 1240.306 kb on + strand, within HER17_RS05620at 1240.368 kb on - strand, within HER17_RS05620at 1240.471 kb on + strand, within HER17_RS05620at 1240.472 kb on - strand, within HER17_RS05620at 1240.477 kb on - strand, within HER17_RS05620at 1240.497 kb on + strand, within HER17_RS05620at 1240.497 kb on + strand, within HER17_RS05620at 1240.497 kb on + strand, within HER17_RS05620at 1240.497 kb on + strand, within HER17_RS05620at 1240.498 kb on - strand, within HER17_RS05620at 1240.543 kb on - strand, within HER17_RS05620at 1240.577 kb on + strandat 1240.578 kb on - strandat 1240.578 kb on - strandat 1240.633 kb on + strandat 1240.639 kb on - strandat 1240.715 kb on + strandat 1240.716 kb on - strandat 1240.716 kb on - strandat 1240.716 kb on - strandat 1240.766 kb on - strandat 1240.805 kb on - strandat 1240.847 kb on - strandat 1240.875 kb on + strandat 1240.876 kb on - strandat 1240.876 kb on - strandat 1240.876 kb on - strandat 1240.890 kb on + strand, within HER17_RS05625at 1240.893 kb on + strand, within HER17_RS05625at 1240.893 kb on + strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.894 kb on - strand, within HER17_RS05625at 1240.906 kb on + strand, within HER17_RS05625at 1240.952 kb on + strand, within HER17_RS05625

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,237,013 + -0.2
1,237,102 + -0.3
1,237,102 + +0.6
1,237,102 + +0.2
1,237,119 + +1.0
1,237,247 + HER17_RS05610 0.23 -0.5
1,237,247 + HER17_RS05610 0.23 -0.1
1,237,247 + HER17_RS05610 0.23 +0.4
1,237,247 + HER17_RS05610 0.23 +0.0
1,237,247 + HER17_RS05610 0.23 -1.1
1,237,248 - HER17_RS05610 0.23 -0.0
1,237,248 - HER17_RS05610 0.23 +0.6
1,237,248 - HER17_RS05610 0.23 +1.1
1,237,248 - HER17_RS05610 0.23 -0.3
1,237,248 - HER17_RS05610 0.23 +0.9
1,237,251 + HER17_RS05610 0.24 -0.2
1,237,251 + HER17_RS05610 0.24 +0.3
1,237,251 + HER17_RS05610 0.24 +0.1
1,237,251 + HER17_RS05610 0.24 +0.2
1,237,251 + HER17_RS05610 0.24 -0.3
1,237,251 + HER17_RS05610 0.24 +0.5
1,237,252 - HER17_RS05610 0.24 +0.3
1,237,252 - HER17_RS05610 0.24 +0.4
1,237,252 - HER17_RS05610 0.24 -0.2
1,237,252 - HER17_RS05610 0.24 -1.0
1,237,252 - HER17_RS05610 0.24 +0.4
1,237,362 + HER17_RS05610 0.36 -0.1
1,237,375 - HER17_RS05610 0.37 -0.0
1,237,403 + HER17_RS05610 0.40 -0.1
1,237,403 + HER17_RS05610 0.40 +0.4
1,237,404 - HER17_RS05610 0.40 +0.4
1,237,404 - HER17_RS05610 0.40 +0.8
1,237,499 + HER17_RS05610 0.50 +0.2
1,237,500 - HER17_RS05610 0.50 +0.6
1,237,575 + HER17_RS05610 0.59 +0.1
1,237,575 + HER17_RS05610 0.59 +0.2
1,237,670 + HER17_RS05610 0.69 -0.1
1,237,678 + HER17_RS05610 0.70 -0.1
1,237,679 - HER17_RS05610 0.70 +0.3
1,237,679 - HER17_RS05610 0.70 +0.9
1,237,718 + HER17_RS05610 0.74 -0.5
1,237,718 + HER17_RS05610 0.74 +0.8
1,237,765 + HER17_RS05610 0.79 +0.1
1,237,765 + HER17_RS05610 0.79 +0.3
1,237,766 - HER17_RS05610 0.79 -0.3
1,237,766 - HER17_RS05610 0.79 +0.1
1,237,766 - HER17_RS05610 0.79 +0.5
1,237,766 - HER17_RS05610 0.79 +0.2
1,237,766 - HER17_RS05610 0.79 +0.0
1,237,788 - HER17_RS05610 0.82 -0.1
1,237,956 + +0.9
1,237,956 + -0.4
1,237,956 + -0.1
1,238,124 + +0.8
1,238,125 - +0.7
1,238,146 + -0.5
1,238,168 + HER17_RS05615 0.11 +0.5
1,238,168 + HER17_RS05615 0.11 -0.0
1,238,169 - HER17_RS05615 0.11 +0.1
1,238,240 + HER17_RS05615 0.14 -0.4
1,238,423 + HER17_RS05615 0.23 -2.0
1,238,424 - HER17_RS05615 0.23 -0.3
1,238,449 + HER17_RS05615 0.25 +0.4
1,238,449 + HER17_RS05615 0.25 +0.2
1,238,455 - HER17_RS05615 0.25 -2.0
1,238,653 - HER17_RS05615 0.35 -0.4
1,238,653 - HER17_RS05615 0.35 -0.4
1,238,653 - HER17_RS05615 0.35 +0.8
1,238,869 - HER17_RS05615 0.45 +0.4
1,238,967 + HER17_RS05615 0.50 -0.5
1,238,997 + HER17_RS05615 0.52 -0.7
1,238,997 + HER17_RS05615 0.52 -0.0
1,238,997 + HER17_RS05615 0.52 +0.0
1,238,997 + HER17_RS05615 0.52 -0.3
1,239,041 + HER17_RS05615 0.54 -0.3
1,239,219 - HER17_RS05615 0.63 -0.1
1,239,294 + HER17_RS05615 0.67 -0.2
1,239,294 + HER17_RS05615 0.67 -0.4
1,239,294 + HER17_RS05615 0.67 +0.0
1,239,295 - HER17_RS05615 0.67 +1.3
1,239,295 - HER17_RS05615 0.67 +1.0
1,239,388 - HER17_RS05615 0.71 +0.0
1,239,388 - HER17_RS05615 0.71 -0.8
1,239,420 + HER17_RS05615 0.73 +0.9
1,239,420 + HER17_RS05615 0.73 -0.3
1,239,420 + HER17_RS05615 0.73 -2.0
1,239,420 + HER17_RS05615 0.73 -0.2
1,239,420 + HER17_RS05615 0.73 -0.0
1,239,421 - HER17_RS05615 0.73 +0.4
1,239,421 - HER17_RS05615 0.73 -1.1
1,239,421 - HER17_RS05615 0.73 -0.0
1,239,447 + HER17_RS05615 0.74 -0.5
1,239,447 + HER17_RS05615 0.74 -1.0
1,239,535 + HER17_RS05615 0.78 +0.5
1,239,535 + HER17_RS05615 0.78 +0.4
1,239,536 - HER17_RS05615 0.79 -0.4
1,239,561 - HER17_RS05615 0.80 +0.3
1,239,564 + HER17_RS05615 0.80 -1.2
1,239,624 + HER17_RS05615 0.83 +0.0
1,239,640 - HER17_RS05615 0.84 -0.1
1,239,732 + HER17_RS05615 0.88 +0.0
1,239,851 + +0.6
1,239,851 + -0.2
1,239,852 - +0.1
1,239,852 - -0.0
1,239,852 - +0.3
1,239,922 - +0.1
1,239,934 + +0.7
1,239,943 + +0.7
1,239,943 + -0.6
1,239,947 + -0.4
1,239,947 + +0.1
1,239,947 + -0.7
1,239,947 + -0.6
1,239,948 - +0.8
1,239,968 - -0.0
1,239,968 - -0.4
1,240,153 + HER17_RS05620 0.24 -0.1
1,240,153 + HER17_RS05620 0.24 +0.7
1,240,153 + HER17_RS05620 0.24 -0.8
1,240,153 + HER17_RS05620 0.24 +1.3
1,240,154 - HER17_RS05620 0.24 -0.6
1,240,154 - HER17_RS05620 0.24 -0.5
1,240,220 + HER17_RS05620 0.35 -0.4
1,240,220 + HER17_RS05620 0.35 +0.3
1,240,221 - HER17_RS05620 0.35 -0.1
1,240,221 - HER17_RS05620 0.35 +0.8
1,240,221 - HER17_RS05620 0.35 -0.1
1,240,226 - HER17_RS05620 0.36 +0.3
1,240,276 + HER17_RS05620 0.45 +0.1
1,240,276 + HER17_RS05620 0.45 +0.0
1,240,276 + HER17_RS05620 0.45 +0.4
1,240,306 + HER17_RS05620 0.50 +0.3
1,240,368 - HER17_RS05620 0.60 -0.1
1,240,471 + HER17_RS05620 0.78 +0.8
1,240,472 - HER17_RS05620 0.78 +0.2
1,240,477 - HER17_RS05620 0.79 +0.1
1,240,497 + HER17_RS05620 0.82 +0.1
1,240,497 + HER17_RS05620 0.82 +0.7
1,240,497 + HER17_RS05620 0.82 -0.2
1,240,497 + HER17_RS05620 0.82 -0.2
1,240,498 - HER17_RS05620 0.82 -0.6
1,240,543 - HER17_RS05620 0.90 +0.8
1,240,577 + +0.2
1,240,578 - -0.3
1,240,578 - -0.8
1,240,633 + +0.3
1,240,639 - +0.5
1,240,715 + +0.4
1,240,716 - -0.2
1,240,716 - -0.4
1,240,716 - +0.6
1,240,766 - +1.1
1,240,805 - +0.1
1,240,847 - +0.6
1,240,875 + -0.0
1,240,876 - -0.0
1,240,876 - +0.3
1,240,876 - +0.2
1,240,890 + HER17_RS05625 0.10 -0.8
1,240,893 + HER17_RS05625 0.11 -2.3
1,240,893 + HER17_RS05625 0.11 +0.4
1,240,894 - HER17_RS05625 0.11 -1.1
1,240,894 - HER17_RS05625 0.11 -0.8
1,240,894 - HER17_RS05625 0.11 +0.2
1,240,894 - HER17_RS05625 0.11 -0.3
1,240,894 - HER17_RS05625 0.11 -0.6
1,240,906 + HER17_RS05625 0.11 -0.2
1,240,952 + HER17_RS05625 0.15 +0.3

Or see this region's nucleotide sequence