Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05605

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,235,220	+		HER17_RS05600	0.87	+0.7
1,235,221	-		HER17_RS05600	0.87	-0.1
1,235,349	+				-0.1
1,235,350	-				+0.2
1,235,350	-				+0.0
1,235,363	+				+0.4
1,235,364	-				-0.2
1,235,383	-				+1.0
1,235,383	-				+0.6
1,235,430	+				-0.1
1,235,536	+				-0.9
1,235,536	+				-1.0
1,235,537	-				-1.9
1,235,544	+				+0.6
1,235,544	+				-0.4
1,235,564	+				+1.0
1,235,564	+				-0.4
1,235,565	-				+0.3
1,235,565	-				+0.3
1,235,565	-				+0.6
1,235,628	-				+1.5
1,235,641	-				+0.4
1,235,901	+				+0.3
1,235,901	+				-0.1
1,235,901	+				+0.3
1,235,901	+				+0.1
1,235,901	+				-0.0
1,235,964	+				-1.6
1,235,978	-				+0.2
1,236,060	+				-0.1
1,236,061	-				-1.9
1,236,073	+				+0.3
1,236,073	+				+0.5
1,236,074	-				-0.1
1,236,105	+				-0.0
1,236,131	+				-0.5
1,236,218	-				+0.3
1,236,234	+				-0.1
1,236,235	-				-0.3
1,236,248	-				-0.5
1,236,248	-				+0.8
1,236,297	+				-2.2
1,236,297	+				-0.5
1,236,297	+				+0.2
1,236,298	-		HER17_RS05605	0.10	-0.1
1,236,298	-		HER17_RS05605	0.10	-1.1
1,236,298	-		HER17_RS05605	0.10	+0.5
1,236,298	-		HER17_RS05605	0.10	-2.5
1,236,310	+		HER17_RS05605	0.12	-0.6
1,236,310	+		HER17_RS05605	0.12	+0.0
1,236,310	+		HER17_RS05605	0.12	-0.7
1,236,311	-		HER17_RS05605	0.12	-0.0
1,236,482	+		HER17_RS05605	0.33	+0.4
1,236,482	+		HER17_RS05605	0.33	-0.6
1,236,483	-		HER17_RS05605	0.33	+0.1
1,236,483	-		HER17_RS05605	0.33	-0.0
1,236,483	-		HER17_RS05605	0.33	-0.6
1,236,483	-		HER17_RS05605	0.33	+0.2
1,236,627	+		HER17_RS05605	0.51	-0.6
1,236,793	+		HER17_RS05605	0.72	+0.2
1,236,838	+		HER17_RS05605	0.78	-0.5
1,237,013	+				-0.2
1,237,102	+				-0.3
1,237,102	+				+0.6
1,237,102	+				+0.2
1,237,119	+				+1.0
1,237,247	+		HER17_RS05610	0.23	-0.5
1,237,247	+		HER17_RS05610	0.23	-0.1
1,237,247	+		HER17_RS05610	0.23	+0.4
1,237,247	+		HER17_RS05610	0.23	+0.0
1,237,247	+		HER17_RS05610	0.23	-1.1
1,237,248	-		HER17_RS05610	0.23	-0.0
1,237,248	-		HER17_RS05610	0.23	+0.6
1,237,248	-		HER17_RS05610	0.23	+1.1
1,237,248	-		HER17_RS05610	0.23	-0.3
1,237,248	-		HER17_RS05610	0.23	+0.9
1,237,251	+		HER17_RS05610	0.24	-0.2
1,237,251	+		HER17_RS05610	0.24	+0.3
1,237,251	+		HER17_RS05610	0.24	+0.1
1,237,251	+		HER17_RS05610	0.24	+0.2
1,237,251	+		HER17_RS05610	0.24	-0.3
1,237,251	+		HER17_RS05610	0.24	+0.5
1,237,252	-		HER17_RS05610	0.24	+0.3
1,237,252	-		HER17_RS05610	0.24	+0.4
1,237,252	-		HER17_RS05610	0.24	-0.2
1,237,252	-		HER17_RS05610	0.24	-1.0
1,237,252	-		HER17_RS05610	0.24	+0.4
1,237,362	+		HER17_RS05610	0.36	-0.1
1,237,375	-		HER17_RS05610	0.37	-0.0
1,237,403	+		HER17_RS05610	0.40	-0.1
1,237,403	+		HER17_RS05610	0.40	+0.4
1,237,404	-		HER17_RS05610	0.40	+0.4
1,237,404	-		HER17_RS05610	0.40	+0.8
1,237,499	+		HER17_RS05610	0.50	+0.2
1,237,500	-		HER17_RS05610	0.50	+0.6
1,237,575	+		HER17_RS05610	0.59	+0.1
1,237,575	+		HER17_RS05610	0.59	+0.2
1,237,670	+		HER17_RS05610	0.69	-0.1
1,237,678	+		HER17_RS05610	0.70	-0.1
1,237,679	-		HER17_RS05610	0.70	+0.3
1,237,679	-		HER17_RS05610	0.70	+0.9
1,237,718	+		HER17_RS05610	0.74	-0.5
1,237,718	+		HER17_RS05610	0.74	+0.8
1,237,765	+		HER17_RS05610	0.79	+0.1
1,237,765	+		HER17_RS05610	0.79	+0.3
1,237,766	-		HER17_RS05610	0.79	-0.3
1,237,766	-		HER17_RS05610	0.79	+0.1
1,237,766	-		HER17_RS05610	0.79	+0.5
1,237,766	-		HER17_RS05610	0.79	+0.2
1,237,766	-		HER17_RS05610	0.79	+0.0
1,237,788	-		HER17_RS05610	0.82	-0.1
1,237,956	+				+0.9
1,237,956	+				-0.4
1,237,956	+				-0.1