Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05095

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,145,276	+		HER17_RS05085	0.18	+0.1
1,145,276	+		HER17_RS05085	0.18	+0.7
1,145,277	-		HER17_RS05085	0.19	+0.2
1,145,277	-		HER17_RS05085	0.19	-1.3
1,145,283	+		HER17_RS05085	0.20	-0.2
1,145,283	+		HER17_RS05085	0.20	-0.0
1,145,284	-		HER17_RS05085	0.20	-0.3
1,145,284	-		HER17_RS05085	0.20	+0.6
1,145,284	-		HER17_RS05085	0.20	-0.3
1,145,284	-		HER17_RS05085	0.20	+0.3
1,145,284	-		HER17_RS05085	0.20	+0.1
1,145,284	-		HER17_RS05085	0.20	-0.6
1,145,284	-		HER17_RS05085	0.20	-0.7
1,145,284	-		HER17_RS05085	0.20	+0.6
1,145,284	-		HER17_RS05085	0.20	-0.7
1,145,284	-		HER17_RS05085	0.20	-0.4
1,145,284	-		HER17_RS05085	0.20	-0.4
1,145,330	+		HER17_RS05085	0.28	-0.1
1,145,342	+		HER17_RS05085	0.30	+0.6
1,145,343	-		HER17_RS05085	0.30	-0.1
1,145,343	-		HER17_RS05085	0.30	-0.9
1,145,367	-		HER17_RS05085	0.34	+0.1
1,145,431	+		HER17_RS05085	0.46	-0.3
1,145,431	+		HER17_RS05085	0.46	-0.4
1,145,554	-		HER17_RS05085	0.67	-1.7
1,145,586	-		HER17_RS05085	0.73	+0.8
1,145,594	+		HER17_RS05085	0.74	+0.1
1,145,594	+		HER17_RS05085	0.74	+0.6
1,145,595	-		HER17_RS05085	0.75	+0.0
1,145,595	-		HER17_RS05085	0.75	+0.6
1,145,627	+		HER17_RS05085	0.80	-0.2
1,145,627	+		HER17_RS05085	0.80	+1.4
1,145,628	-		HER17_RS05085	0.80	-0.1
1,145,657	+		HER17_RS05085	0.86	+0.0
1,145,657	+		HER17_RS05085	0.86	+0.6
1,145,657	+		HER17_RS05085	0.86	+0.5
1,145,658	-		HER17_RS05085	0.86	-0.5
1,145,696	+				+0.6
1,145,729	+				-0.3
1,145,773	+				+0.2
1,145,829	+		HER17_RS05090	0.22	-0.3
1,145,830	-		HER17_RS05090	0.22	-0.2
1,145,832	+		HER17_RS05090	0.23	+0.7
1,145,832	+		HER17_RS05090	0.23	+0.8
1,145,832	+		HER17_RS05090	0.23	+0.5
1,145,833	-		HER17_RS05090	0.23	-0.2
1,145,856	-		HER17_RS05090	0.28	-0.1
1,145,856	-		HER17_RS05090	0.28	-0.9
1,145,887	+		HER17_RS05090	0.35	+0.3
1,145,888	-		HER17_RS05090	0.36	-0.0
1,145,888	-		HER17_RS05090	0.36	+0.3
1,145,908	+		HER17_RS05090	0.40	-0.7
1,145,914	+		HER17_RS05090	0.42	+0.7
1,145,926	-		HER17_RS05090	0.45	+0.9
1,145,985	-		HER17_RS05090	0.58	-0.0
1,146,003	+		HER17_RS05090	0.62	+0.1
1,146,007	+		HER17_RS05090	0.63	+0.1
1,146,007	+		HER17_RS05090	0.63	-0.5
1,146,033	+		HER17_RS05090	0.69	-0.5
1,146,033	+		HER17_RS05090	0.69	+0.5
1,146,033	+		HER17_RS05090	0.69	-0.5
1,146,034	-		HER17_RS05090	0.70	-0.1
1,146,034	-		HER17_RS05090	0.70	-0.0
1,146,034	-		HER17_RS05090	0.70	-0.2
1,146,113	+		HER17_RS05090	0.88	+0.3
1,146,113	+		HER17_RS05090	0.88	+0.3
1,146,114	-		HER17_RS05090	0.88	+2.2
1,146,121	-				-0.2
1,146,121	-				+0.4
1,146,130	+				+0.3
1,146,130	+				-0.4
1,146,131	-				-0.8
1,146,132	+				-0.2
1,146,133	-				+0.4
1,146,133	-				-0.5
1,146,133	-				-0.2
1,146,133	-				-0.9
1,146,133	-				+0.4
1,146,133	-				+0.3
1,146,162	-				-0.7
1,146,206	+				-0.4
1,146,207	-				-0.2
1,146,207	-				-0.4
1,146,207	-				+0.1
1,146,212	+				+0.6
1,146,212	+				+0.6
1,146,212	+				+0.2
1,146,212	+				+0.9
1,146,213	-				+0.4
1,146,213	-				-0.8
1,146,213	-				+0.1
1,146,221	+				+0.9
1,146,222	-				-1.6
1,146,222	-				-1.2
1,146,366	-				-1.3
1,146,366	-				-1.8
1,146,554	+		HER17_RS05095	0.20	-0.9
1,146,637	-		HER17_RS05095	0.25	-0.6
1,146,680	+		HER17_RS05095	0.28	+0.5
1,146,681	-		HER17_RS05095	0.28	-0.6
1,146,681	-		HER17_RS05095	0.28	-0.3
1,146,696	+		HER17_RS05095	0.29	-0.2
1,146,696	+		HER17_RS05095	0.29	-1.5
1,146,697	-		HER17_RS05095	0.29	-0.0
1,146,697	-		HER17_RS05095	0.29	-1.0
1,146,697	-		HER17_RS05095	0.29	-1.6
1,146,698	+		HER17_RS05095	0.29	-0.9
1,146,698	+		HER17_RS05095	0.29	-1.3
1,146,698	+		HER17_RS05095	0.29	-0.5
1,146,699	-		HER17_RS05095	0.29	-0.7
1,146,783	+		HER17_RS05095	0.35	-0.7
1,146,784	-		HER17_RS05095	0.35	-0.8
1,146,804	+		HER17_RS05095	0.36	-3.8
1,146,805	-		HER17_RS05095	0.36	-0.5
1,146,805	-		HER17_RS05095	0.36	+0.3
1,146,805	-		HER17_RS05095	0.36	-0.7
1,146,805	-		HER17_RS05095	0.36	-0.7
1,146,831	+		HER17_RS05095	0.38	-1.2
1,146,832	-		HER17_RS05095	0.38	-0.6
1,146,832	-		HER17_RS05095	0.38	+0.1
1,146,924	+		HER17_RS05095	0.44	+0.8
1,146,933	+		HER17_RS05095	0.44	+0.0
1,146,933	+		HER17_RS05095	0.44	-0.0
1,146,934	-		HER17_RS05095	0.44	-0.5
1,146,934	-		HER17_RS05095	0.44	-0.6
1,146,953	+		HER17_RS05095	0.45	-0.7
1,146,961	+		HER17_RS05095	0.46	-1.3
1,146,966	+		HER17_RS05095	0.46	-1.0
1,146,966	+		HER17_RS05095	0.46	-2.0
1,146,966	+		HER17_RS05095	0.46	-1.7
1,146,987	-		HER17_RS05095	0.48	-0.3
1,146,987	-		HER17_RS05095	0.48	-0.0
1,147,017	-		HER17_RS05095	0.50	-0.2
1,147,017	-		HER17_RS05095	0.50	-1.6
1,147,020	+		HER17_RS05095	0.50	+0.3
1,147,021	-		HER17_RS05095	0.50	-0.2
1,147,021	-		HER17_RS05095	0.50	-0.7
1,147,021	-		HER17_RS05095	0.50	-2.4
1,147,021	-		HER17_RS05095	0.50	-1.1
1,147,066	-		HER17_RS05095	0.53	-1.7
1,147,066	-		HER17_RS05095	0.53	-0.9
1,147,079	+		HER17_RS05095	0.54	-3.2
1,147,099	-		HER17_RS05095	0.55	-0.3
1,147,102	+		HER17_RS05095	0.55	-1.3
1,147,103	-		HER17_RS05095	0.55	-0.1
1,147,113	-		HER17_RS05095	0.56	-0.4
1,147,144	-		HER17_RS05095	0.58	+0.5
1,147,144	-		HER17_RS05095	0.58	-0.5
1,147,222	-		HER17_RS05095	0.63	-0.8
1,147,223	+		HER17_RS05095	0.63	-0.1
1,147,223	+		HER17_RS05095	0.63	+0.7
1,147,245	-		HER17_RS05095	0.64	+0.1
1,147,354	+		HER17_RS05095	0.71	-0.9
1,147,354	+		HER17_RS05095	0.71	-0.4
1,147,355	-		HER17_RS05095	0.71	-0.2
1,147,355	-		HER17_RS05095	0.71	+0.7
1,147,355	-		HER17_RS05095	0.71	-0.1
1,147,361	+		HER17_RS05095	0.72	-1.2
1,147,361	+		HER17_RS05095	0.72	-0.2
1,147,361	+		HER17_RS05095	0.72	-1.4
1,147,401	-		HER17_RS05095	0.74	+0.0
1,147,401	-		HER17_RS05095	0.74	-2.3
1,147,483	+		HER17_RS05095	0.80	-1.5
1,147,540	+		HER17_RS05095	0.83	-0.9
1,147,540	+		HER17_RS05095	0.83	-2.6
1,147,541	-		HER17_RS05095	0.83	-2.3
1,147,541	-		HER17_RS05095	0.83	-0.6
1,147,597	+		HER17_RS05095	0.87	+0.0
1,147,628	+		HER17_RS05095	0.89	-1.9
1,147,691	-				-0.1
1,147,763	+				+0.1
1,147,764	-				-0.7
1,147,764	-				-2.0
1,147,782	+				+0.1
1,147,798	-				+0.6
1,147,830	+				-0.5
1,147,830	+				-0.3
1,147,840	+				-0.4
1,147,841	-				+0.3
1,147,841	-				+0.1
1,147,843	+				+0.7
1,147,844	-				+0.6
1,147,858	+				+0.5
1,147,859	-				-0.8
1,147,859	-				-1.1
1,147,952	-				-0.8
1,147,962	+				-0.1
1,147,962	+				-1.8
1,147,963	-				+0.6
1,147,963	-				+0.1
1,147,963	-				-0.3
1,147,963	-				-1.0
1,147,963	-				-1.2
1,147,973	-				+0.1
1,147,973	-				-0.3
1,148,017	+		HER17_RS05100	0.13	+0.0
1,148,018	-		HER17_RS05100	0.13	-0.3
1,148,056	-		HER17_RS05100	0.20	-0.6
1,148,119	-		HER17_RS05100	0.32	+0.6
1,148,214	-		HER17_RS05100	0.51	+0.2
1,148,342	+		HER17_RS05100	0.76	-0.0
1,148,343	-		HER17_RS05100	0.76	-0.4
1,148,343	-		HER17_RS05100	0.76	+0.4
1,148,402	-		HER17_RS05100	0.87	-0.2
1,148,408	-		HER17_RS05100	0.88	-0.0
1,148,457	+				+0.3
1,148,457	+				+0.3
1,148,457	+				+0.5
1,148,458	-				+1.0
1,148,458	-				-1.4
1,148,461	+				-0.4
1,148,461	+				-0.0
1,148,461	+				-1.5
1,148,461	+				-0.5
1,148,461	+				+0.1
1,148,461	+				-0.3
1,148,462	-				+0.1
1,148,462	-				+0.7
1,148,462	-				+0.1
1,148,462	-				-0.6
1,148,462	-				+0.6
1,148,462	-				-0.3
1,148,462	-				+0.3
1,148,465	+				+0.2
1,148,466	-				+0.3
1,148,466	-				-0.4
1,148,466	-				-0.3
1,148,487	+				-0.1
1,148,558	+				-1.5
1,148,558	+				+0.1
1,148,559	-				-1.1
1,148,559	-				-0.5
1,148,559	-				-2.9
1,148,666	+		HER17_RS05105	0.16	+0.4
1,148,671	+		HER17_RS05105	0.17	+0.3
1,148,672	-		HER17_RS05105	0.17	-0.4
1,148,673	+		HER17_RS05105	0.17	-0.2
1,148,673	+		HER17_RS05105	0.17	-1.6
1,148,674	-		HER17_RS05105	0.17	-2.0
1,148,674	-		HER17_RS05105	0.17	+0.0
1,148,674	-		HER17_RS05105	0.17	+0.3
1,148,674	-		HER17_RS05105	0.17	+1.2
1,148,743	+		HER17_RS05105	0.26	+0.1
1,148,744	-		HER17_RS05105	0.26	-0.3
1,148,745	+		HER17_RS05105	0.26	+0.4
1,148,746	-		HER17_RS05105	0.26	-1.4
1,148,746	-		HER17_RS05105	0.26	-0.4