Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04230 and HER17_RS04235 are separated by 289 nucleotides HER17_RS04235 and HER17_RS04240 overlap by 1 nucleotides
HER17_RS04230: HER17_RS04230 - PilZ domain-containing protein, at 965,828 to 967,552
_RS04230
HER17_RS04235: HER17_RS04235 - NADPH-dependent assimilatory sulfite reductase flavoprotein subunit, at 967,842 to 969,671
_RS04235
HER17_RS04240: HER17_RS04240 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 969,671 to 971,404
_RS04240
Position (kb) 967
968
969
970 Strain fitness (log2 ratio) -2
-1
0
1 at 966.882 kb on + strand, within HER17_RS04230 at 966.883 kb on - strand, within HER17_RS04230 at 966.883 kb on - strand, within HER17_RS04230 at 966.883 kb on - strand, within HER17_RS04230 at 966.883 kb on - strand, within HER17_RS04230 at 966.933 kb on + strand, within HER17_RS04230 at 966.933 kb on + strand, within HER17_RS04230 at 966.994 kb on + strand, within HER17_RS04230 at 966.994 kb on + strand, within HER17_RS04230 at 967.053 kb on + strand, within HER17_RS04230 at 967.062 kb on + strand, within HER17_RS04230 at 967.062 kb on + strand, within HER17_RS04230 at 967.063 kb on - strand, within HER17_RS04230 at 967.205 kb on - strand, within HER17_RS04230 at 967.228 kb on + strand, within HER17_RS04230 at 967.228 kb on + strand, within HER17_RS04230 at 967.268 kb on + strand, within HER17_RS04230 at 967.269 kb on - strand, within HER17_RS04230 at 967.286 kb on + strand, within HER17_RS04230 at 967.286 kb on + strand, within HER17_RS04230 at 967.287 kb on - strand, within HER17_RS04230 at 967.287 kb on - strand, within HER17_RS04230 at 967.287 kb on - strand, within HER17_RS04230 at 967.291 kb on + strand, within HER17_RS04230 at 967.292 kb on - strand, within HER17_RS04230 at 967.310 kb on + strand, within HER17_RS04230 at 967.310 kb on + strand, within HER17_RS04230 at 967.311 kb on - strand, within HER17_RS04230 at 967.311 kb on - strand, within HER17_RS04230 at 967.311 kb on - strand, within HER17_RS04230 at 967.311 kb on - strand, within HER17_RS04230 at 967.355 kb on + strand, within HER17_RS04230 at 967.387 kb on + strand at 967.393 kb on + strand at 967.448 kb on - strand at 967.453 kb on + strand at 967.664 kb on + strand at 967.694 kb on + strand at 967.695 kb on - strand at 967.711 kb on + strand at 967.711 kb on + strand at 967.711 kb on + strand at 967.711 kb on + strand at 967.714 kb on + strand at 967.731 kb on + strand at 967.738 kb on + strand at 967.778 kb on + strand at 967.778 kb on + strand at 967.779 kb on - strand at 967.796 kb on + strand at 967.797 kb on - strand at 967.847 kb on + strand at 967.848 kb on - strand at 967.895 kb on - strand at 967.956 kb on + strand at 968.047 kb on + strand, within HER17_RS04235 at 968.167 kb on - strand, within HER17_RS04235 at 968.337 kb on + strand, within HER17_RS04235 at 968.389 kb on + strand, within HER17_RS04235 at 968.389 kb on + strand, within HER17_RS04235 at 968.389 kb on + strand, within HER17_RS04235 at 968.389 kb on + strand, within HER17_RS04235 at 968.865 kb on + strand, within HER17_RS04235 at 968.865 kb on + strand, within HER17_RS04235 at 968.866 kb on - strand, within HER17_RS04235 at 968.958 kb on - strand, within HER17_RS04235 at 969.033 kb on + strand, within HER17_RS04235 at 969.034 kb on - strand, within HER17_RS04235 at 969.039 kb on - strand, within HER17_RS04235 at 969.106 kb on - strand, within HER17_RS04235 at 969.106 kb on - strand, within HER17_RS04235 at 969.142 kb on - strand, within HER17_RS04235 at 969.201 kb on - strand, within HER17_RS04235 at 969.281 kb on + strand, within HER17_RS04235 at 969.281 kb on + strand, within HER17_RS04235 at 969.336 kb on - strand, within HER17_RS04235 at 969.347 kb on + strand, within HER17_RS04235 at 969.384 kb on + strand, within HER17_RS04235 at 969.385 kb on - strand, within HER17_RS04235 at 969.450 kb on + strand, within HER17_RS04235 at 969.451 kb on - strand, within HER17_RS04235 at 969.519 kb on + strand at 969.519 kb on + strand at 969.519 kb on + strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.520 kb on - strand at 969.542 kb on + strand at 969.580 kb on + strand at 969.580 kb on + strand at 969.580 kb on + strand at 969.652 kb on - strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.666 kb on + strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.667 kb on - strand at 969.684 kb on - strand at 969.720 kb on + strand at 969.720 kb on + strand at 969.721 kb on - strand at 969.721 kb on - strand at 969.840 kb on + strand at 969.856 kb on + strand, within HER17_RS04240 at 969.856 kb on + strand, within HER17_RS04240 at 969.857 kb on - strand, within HER17_RS04240 at 969.860 kb on + strand, within HER17_RS04240 at 969.860 kb on + strand, within HER17_RS04240 at 969.861 kb on - strand, within HER17_RS04240 at 970.014 kb on - strand, within HER17_RS04240 at 970.014 kb on - strand, within HER17_RS04240 at 970.018 kb on + strand, within HER17_RS04240 at 970.053 kb on - strand, within HER17_RS04240 at 970.102 kb on + strand, within HER17_RS04240 at 970.102 kb on + strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.103 kb on - strand, within HER17_RS04240 at 970.159 kb on + strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.160 kb on - strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.199 kb on + strand, within HER17_RS04240 at 970.200 kb on - strand, within HER17_RS04240 at 970.250 kb on + strand, within HER17_RS04240 at 970.251 kb on - strand, within HER17_RS04240 at 970.319 kb on + strand, within HER17_RS04240 at 970.319 kb on + strand, within HER17_RS04240 at 970.320 kb on - strand, within HER17_RS04240 at 970.320 kb on - strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.515 kb on - strand, within HER17_RS04240 at 970.532 kb on - strand, within HER17_RS04240 at 970.595 kb on - strand, within HER17_RS04240
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 966,882 + HER17_RS04230 0.61 +0.3 966,883 - HER17_RS04230 0.61 +0.3 966,883 - HER17_RS04230 0.61 -0.0 966,883 - HER17_RS04230 0.61 -0.5 966,883 - HER17_RS04230 0.61 +0.2 966,933 + HER17_RS04230 0.64 +0.1 966,933 + HER17_RS04230 0.64 -0.5 966,994 + HER17_RS04230 0.68 +0.4 966,994 + HER17_RS04230 0.68 +0.5 967,053 + HER17_RS04230 0.71 -0.4 967,062 + HER17_RS04230 0.72 -1.0 967,062 + HER17_RS04230 0.72 -0.2 967,063 - HER17_RS04230 0.72 -0.3 967,205 - HER17_RS04230 0.80 +0.4 967,228 + HER17_RS04230 0.81 +0.4 967,228 + HER17_RS04230 0.81 +0.2 967,268 + HER17_RS04230 0.83 +0.8 967,269 - HER17_RS04230 0.84 -0.3 967,286 + HER17_RS04230 0.85 +0.6 967,286 + HER17_RS04230 0.85 +0.5 967,287 - HER17_RS04230 0.85 -1.2 967,287 - HER17_RS04230 0.85 +0.1 967,287 - HER17_RS04230 0.85 +0.3 967,291 + HER17_RS04230 0.85 -0.7 967,292 - HER17_RS04230 0.85 -0.0 967,310 + HER17_RS04230 0.86 -1.4 967,310 + HER17_RS04230 0.86 -0.0 967,311 - HER17_RS04230 0.86 +0.5 967,311 - HER17_RS04230 0.86 -0.4 967,311 - HER17_RS04230 0.86 -0.4 967,311 - HER17_RS04230 0.86 +0.2 967,355 + HER17_RS04230 0.89 -0.5 967,387 + -0.3 967,393 + -0.1 967,448 - +0.2 967,453 + +0.3 967,664 + -0.5 967,694 + -0.6 967,695 - +0.0 967,711 + -0.6 967,711 + -0.4 967,711 + -0.4 967,711 + +0.1 967,714 + +0.3 967,731 + +0.4 967,738 + +0.4 967,778 + +0.0 967,778 + +0.2 967,779 - +0.1 967,796 + -0.7 967,797 - +0.6 967,847 + +0.4 967,848 - +0.2 967,895 - -1.8 967,956 + -0.2 968,047 + HER17_RS04235 0.11 +0.1 968,167 - HER17_RS04235 0.18 -0.6 968,337 + HER17_RS04235 0.27 +0.3 968,389 + HER17_RS04235 0.30 -0.5 968,389 + HER17_RS04235 0.30 +0.7 968,389 + HER17_RS04235 0.30 +1.0 968,389 + HER17_RS04235 0.30 +0.1 968,865 + HER17_RS04235 0.56 +0.9 968,865 + HER17_RS04235 0.56 +0.7 968,866 - HER17_RS04235 0.56 +1.2 968,958 - HER17_RS04235 0.61 -1.7 969,033 + HER17_RS04235 0.65 -0.4 969,034 - HER17_RS04235 0.65 -1.4 969,039 - HER17_RS04235 0.65 -1.0 969,106 - HER17_RS04235 0.69 -1.0 969,106 - HER17_RS04235 0.69 -0.3 969,142 - HER17_RS04235 0.71 -0.6 969,201 - HER17_RS04235 0.74 +0.3 969,281 + HER17_RS04235 0.79 +0.1 969,281 + HER17_RS04235 0.79 -0.0 969,336 - HER17_RS04235 0.82 +1.1 969,347 + HER17_RS04235 0.82 +0.5 969,384 + HER17_RS04235 0.84 +0.1 969,385 - HER17_RS04235 0.84 +0.1 969,450 + HER17_RS04235 0.88 -0.2 969,451 - HER17_RS04235 0.88 -0.1 969,519 + +0.3 969,519 + +0.9 969,519 + +0.9 969,520 - -1.0 969,520 - -0.5 969,520 - -1.3 969,520 - +0.3 969,520 - -2.1 969,520 - +1.2 969,520 - -0.3 969,520 - +0.4 969,520 - -0.0 969,542 + -1.1 969,580 + -0.3 969,580 + -0.7 969,580 + +0.1 969,652 - -0.6 969,666 + -0.4 969,666 + +0.5 969,666 + +0.3 969,666 + -0.4 969,666 + -0.5 969,667 - -0.1 969,667 - +0.1 969,667 - -0.7 969,667 - -0.1 969,684 - -1.7 969,720 + +0.0 969,720 + +0.1 969,721 - +0.1 969,721 - +0.1 969,840 + -0.2 969,856 + HER17_RS04240 0.11 +0.3 969,856 + HER17_RS04240 0.11 -0.2 969,857 - HER17_RS04240 0.11 +0.6 969,860 + HER17_RS04240 0.11 -0.3 969,860 + HER17_RS04240 0.11 +0.6 969,861 - HER17_RS04240 0.11 +0.2 970,014 - HER17_RS04240 0.20 +1.1 970,014 - HER17_RS04240 0.20 +0.3 970,018 + HER17_RS04240 0.20 +0.2 970,053 - HER17_RS04240 0.22 +0.0 970,102 + HER17_RS04240 0.25 -0.4 970,102 + HER17_RS04240 0.25 -0.7 970,103 - HER17_RS04240 0.25 +0.6 970,103 - HER17_RS04240 0.25 +0.5 970,103 - HER17_RS04240 0.25 +1.2 970,159 + HER17_RS04240 0.28 +0.2 970,160 - HER17_RS04240 0.28 +0.4 970,160 - HER17_RS04240 0.28 -0.9 970,160 - HER17_RS04240 0.28 -0.4 970,199 + HER17_RS04240 0.30 -0.2 970,199 + HER17_RS04240 0.30 +0.5 970,199 + HER17_RS04240 0.30 +1.6 970,200 - HER17_RS04240 0.31 -2.5 970,250 + HER17_RS04240 0.33 -0.5 970,251 - HER17_RS04240 0.33 -0.0 970,319 + HER17_RS04240 0.37 -0.8 970,319 + HER17_RS04240 0.37 -0.1 970,320 - HER17_RS04240 0.37 +0.5 970,320 - HER17_RS04240 0.37 +1.2 970,514 + HER17_RS04240 0.49 -0.8 970,514 + HER17_RS04240 0.49 +0.0 970,515 - HER17_RS04240 0.49 +1.7 970,532 - HER17_RS04240 0.50 +0.5 970,595 - HER17_RS04240 0.53 -1.2
Or see this region's nucleotide sequence