Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02310 and HER17_RS02315 are separated by 512 nucleotides HER17_RS02315 and HER17_RS02320 are separated by 204 nucleotides
HER17_RS02310: HER17_RS02310 - methionine synthase, at 513,291 to 516,974
_RS02310
HER17_RS02315: HER17_RS02315 - AraC family transcriptional regulator, at 517,487 to 518,443
_RS02315
HER17_RS02320: HER17_RS02320 - TonB-dependent siderophore receptor, at 518,648 to 520,750
_RS02320
Position (kb) 517
518
519 Strain fitness (log2 ratio) -2
-1
0
1
2 at 516.501 kb on - strand, within HER17_RS02310 at 516.537 kb on + strand, within HER17_RS02310 at 516.537 kb on + strand, within HER17_RS02310 at 516.537 kb on + strand, within HER17_RS02310 at 516.595 kb on - strand, within HER17_RS02310 at 516.598 kb on + strand, within HER17_RS02310 at 516.598 kb on + strand, within HER17_RS02310 at 516.598 kb on + strand, within HER17_RS02310 at 516.598 kb on + strand, within HER17_RS02310 at 516.599 kb on - strand, within HER17_RS02310 at 516.599 kb on - strand, within HER17_RS02310 at 516.599 kb on - strand, within HER17_RS02310 at 516.599 kb on - strand, within HER17_RS02310 at 516.621 kb on + strand at 516.622 kb on - strand at 516.631 kb on - strand at 516.679 kb on - strand at 516.785 kb on - strand at 516.795 kb on + strand at 516.795 kb on + strand at 516.796 kb on - strand at 516.855 kb on + strand at 516.856 kb on - strand at 516.856 kb on - strand at 516.908 kb on + strand at 516.908 kb on + strand at 516.908 kb on + strand at 516.909 kb on - strand at 516.909 kb on - strand at 516.931 kb on + strand at 516.972 kb on + strand at 516.972 kb on + strand at 516.984 kb on + strand at 516.985 kb on - strand at 516.993 kb on + strand at 516.993 kb on + strand at 516.999 kb on + strand at 516.999 kb on + strand at 516.999 kb on + strand at 517.000 kb on - strand at 517.000 kb on - strand at 517.000 kb on - strand at 517.014 kb on + strand at 517.014 kb on + strand at 517.015 kb on - strand at 517.015 kb on - strand at 517.018 kb on + strand at 517.018 kb on + strand at 517.018 kb on + strand at 517.018 kb on + strand at 517.019 kb on - strand at 517.019 kb on - strand at 517.019 kb on - strand at 517.046 kb on - strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.113 kb on + strand at 517.117 kb on + strand at 517.117 kb on + strand at 517.254 kb on + strand at 517.254 kb on + strand at 517.301 kb on - strand at 517.301 kb on - strand at 517.304 kb on + strand at 517.304 kb on + strand at 517.304 kb on + strand at 517.304 kb on + strand at 517.304 kb on + strand at 517.305 kb on - strand at 517.305 kb on - strand at 517.321 kb on - strand at 517.341 kb on + strand at 517.341 kb on + strand at 517.346 kb on - strand at 517.354 kb on + strand at 517.355 kb on - strand at 517.380 kb on - strand at 517.401 kb on - strand at 517.401 kb on - strand at 517.408 kb on - strand at 517.459 kb on + strand at 517.474 kb on + strand at 517.475 kb on - strand at 517.491 kb on + strand at 517.491 kb on + strand at 517.492 kb on - strand at 517.718 kb on + strand, within HER17_RS02315 at 517.719 kb on - strand, within HER17_RS02315 at 517.719 kb on - strand, within HER17_RS02315 at 517.719 kb on - strand, within HER17_RS02315 at 517.719 kb on - strand, within HER17_RS02315 at 517.720 kb on + strand, within HER17_RS02315 at 517.789 kb on + strand, within HER17_RS02315 at 517.977 kb on - strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.980 kb on + strand, within HER17_RS02315 at 517.981 kb on - strand, within HER17_RS02315 at 517.981 kb on - strand, within HER17_RS02315 at 517.981 kb on - strand, within HER17_RS02315 at 517.983 kb on + strand, within HER17_RS02315 at 518.058 kb on + strand, within HER17_RS02315 at 518.058 kb on + strand, within HER17_RS02315 at 518.059 kb on - strand, within HER17_RS02315 at 518.059 kb on - strand, within HER17_RS02315 at 518.059 kb on - strand, within HER17_RS02315 at 518.067 kb on + strand, within HER17_RS02315 at 518.186 kb on + strand, within HER17_RS02315 at 518.186 kb on + strand, within HER17_RS02315 at 518.239 kb on + strand, within HER17_RS02315 at 518.258 kb on + strand, within HER17_RS02315 at 518.279 kb on + strand, within HER17_RS02315 at 518.442 kb on - strand at 518.457 kb on - strand at 518.473 kb on - strand at 518.473 kb on - strand at 518.491 kb on + strand at 518.492 kb on - strand at 518.492 kb on - strand at 518.492 kb on - strand at 518.561 kb on + strand at 518.561 kb on + strand at 518.561 kb on + strand at 518.562 kb on - strand at 518.562 kb on - strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.565 kb on + strand at 518.566 kb on - strand at 518.566 kb on - strand at 518.566 kb on - strand at 518.582 kb on + strand at 518.582 kb on + strand at 518.582 kb on + strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.583 kb on - strand at 518.586 kb on + strand at 518.587 kb on - strand at 518.609 kb on + strand at 518.617 kb on - strand at 518.625 kb on + strand at 518.701 kb on + strand at 518.702 kb on - strand at 518.702 kb on - strand at 518.702 kb on - strand at 518.702 kb on - strand at 518.725 kb on + strand at 518.755 kb on - strand at 518.830 kb on + strand at 518.831 kb on - strand at 518.893 kb on + strand, within HER17_RS02320 at 518.893 kb on + strand, within HER17_RS02320 at 518.893 kb on + strand, within HER17_RS02320 at 518.893 kb on + strand, within HER17_RS02320 at 518.906 kb on + strand, within HER17_RS02320 at 518.906 kb on + strand, within HER17_RS02320 at 518.906 kb on + strand, within HER17_RS02320 at 518.907 kb on - strand, within HER17_RS02320 at 518.907 kb on - strand, within HER17_RS02320 at 518.907 kb on - strand, within HER17_RS02320 at 518.907 kb on - strand, within HER17_RS02320 at 518.909 kb on - strand, within HER17_RS02320 at 518.942 kb on + strand, within HER17_RS02320 at 518.942 kb on + strand, within HER17_RS02320 at 518.942 kb on + strand, within HER17_RS02320 at 518.943 kb on - strand, within HER17_RS02320 at 518.943 kb on - strand, within HER17_RS02320 at 518.943 kb on - strand, within HER17_RS02320 at 518.949 kb on + strand, within HER17_RS02320 at 518.950 kb on - strand, within HER17_RS02320 at 518.950 kb on - strand, within HER17_RS02320 at 518.950 kb on - strand, within HER17_RS02320 at 518.988 kb on - strand, within HER17_RS02320 at 519.016 kb on + strand, within HER17_RS02320 at 519.028 kb on + strand, within HER17_RS02320 at 519.029 kb on - strand, within HER17_RS02320 at 519.029 kb on - strand, within HER17_RS02320 at 519.093 kb on + strand, within HER17_RS02320 at 519.099 kb on - strand, within HER17_RS02320 at 519.261 kb on + strand, within HER17_RS02320 at 519.380 kb on + strand, within HER17_RS02320 at 519.380 kb on + strand, within HER17_RS02320 at 519.380 kb on + strand, within HER17_RS02320
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 516,501 - HER17_RS02310 0.87 -0.2 516,537 + HER17_RS02310 0.88 -0.2 516,537 + HER17_RS02310 0.88 -1.0 516,537 + HER17_RS02310 0.88 -0.4 516,595 - HER17_RS02310 0.90 -0.0 516,598 + HER17_RS02310 0.90 -0.1 516,598 + HER17_RS02310 0.90 -0.2 516,598 + HER17_RS02310 0.90 -0.2 516,598 + HER17_RS02310 0.90 -0.1 516,599 - HER17_RS02310 0.90 -0.2 516,599 - HER17_RS02310 0.90 +0.3 516,599 - HER17_RS02310 0.90 +0.8 516,599 - HER17_RS02310 0.90 -0.5 516,621 + +0.3 516,622 - +1.6 516,631 - +0.8 516,679 - +0.3 516,785 - -0.4 516,795 + +0.1 516,795 + -0.9 516,796 - +0.0 516,855 + +0.6 516,856 - +0.7 516,856 - +0.1 516,908 + +0.7 516,908 + +0.4 516,908 + +2.5 516,909 - +0.1 516,909 - -0.3 516,931 + -0.4 516,972 + -0.8 516,972 + -0.5 516,984 + -0.5 516,985 - -0.9 516,993 + +0.3 516,993 + +0.0 516,999 + +0.2 516,999 + +0.0 516,999 + +0.2 517,000 - -0.8 517,000 - -0.1 517,000 - +0.2 517,014 + -0.7 517,014 + +0.5 517,015 - -0.8 517,015 - -0.2 517,018 + -0.4 517,018 + +0.1 517,018 + +1.1 517,018 + -0.2 517,019 - +0.1 517,019 - -0.3 517,019 - -0.4 517,046 - -1.2 517,113 + +0.5 517,113 + -0.2 517,113 + +0.1 517,113 + -0.2 517,113 + +1.0 517,113 + -0.2 517,113 + +0.9 517,117 + +0.3 517,117 + +0.6 517,254 + -1.9 517,254 + +0.0 517,301 - +0.2 517,301 - -0.2 517,304 + +0.1 517,304 + -1.4 517,304 + -0.2 517,304 + -1.4 517,304 + -0.5 517,305 - -0.4 517,305 - +0.6 517,321 - +0.1 517,341 + +0.4 517,341 + +0.5 517,346 - -0.7 517,354 + +0.3 517,355 - -0.2 517,380 - +1.2 517,401 - -0.7 517,401 - -0.3 517,408 - +0.5 517,459 + -0.1 517,474 + +0.0 517,475 - -0.6 517,491 + +0.0 517,491 + -0.3 517,492 - -0.0 517,718 + HER17_RS02315 0.24 +0.5 517,719 - HER17_RS02315 0.24 +0.1 517,719 - HER17_RS02315 0.24 -2.3 517,719 - HER17_RS02315 0.24 +0.8 517,719 - HER17_RS02315 0.24 +0.3 517,720 + HER17_RS02315 0.24 +0.3 517,789 + HER17_RS02315 0.32 +0.3 517,977 - HER17_RS02315 0.51 -0.2 517,980 + HER17_RS02315 0.52 -1.0 517,980 + HER17_RS02315 0.52 +0.7 517,980 + HER17_RS02315 0.52 +0.9 517,980 + HER17_RS02315 0.52 +1.1 517,980 + HER17_RS02315 0.52 -0.5 517,981 - HER17_RS02315 0.52 -0.8 517,981 - HER17_RS02315 0.52 +0.6 517,981 - HER17_RS02315 0.52 +0.1 517,983 + HER17_RS02315 0.52 +0.4 518,058 + HER17_RS02315 0.60 -0.6 518,058 + HER17_RS02315 0.60 +0.5 518,059 - HER17_RS02315 0.60 -1.2 518,059 - HER17_RS02315 0.60 -0.1 518,059 - HER17_RS02315 0.60 +0.8 518,067 + HER17_RS02315 0.61 -0.5 518,186 + HER17_RS02315 0.73 +0.9 518,186 + HER17_RS02315 0.73 -0.8 518,239 + HER17_RS02315 0.79 -0.6 518,258 + HER17_RS02315 0.81 -0.2 518,279 + HER17_RS02315 0.83 +0.6 518,442 - -0.4 518,457 - -0.6 518,473 - +0.3 518,473 - -0.3 518,491 + +1.0 518,492 - +0.2 518,492 - +0.9 518,492 - -0.0 518,561 + -1.3 518,561 + -0.2 518,561 + +0.2 518,562 - +0.3 518,562 - -0.6 518,565 + -0.3 518,565 + -0.4 518,565 + +0.1 518,565 + -0.4 518,565 + +0.8 518,565 + -0.8 518,565 + -0.6 518,565 + +0.2 518,565 + +0.1 518,565 + +0.6 518,565 + -0.4 518,566 - -1.4 518,566 - -0.1 518,566 - -0.7 518,582 + -0.5 518,582 + +1.2 518,582 + +0.8 518,583 - +0.3 518,583 - +0.0 518,583 - -0.4 518,583 - +0.0 518,583 - +0.2 518,583 - +0.1 518,583 - +0.5 518,583 - +0.0 518,586 + +0.3 518,587 - -0.4 518,609 + -0.7 518,617 - -0.4 518,625 + -1.5 518,701 + +1.4 518,702 - -0.7 518,702 - +0.0 518,702 - -0.0 518,702 - -0.4 518,725 + +0.4 518,755 - -0.2 518,830 + -1.6 518,831 - -0.1 518,893 + HER17_RS02320 0.12 +0.1 518,893 + HER17_RS02320 0.12 -0.8 518,893 + HER17_RS02320 0.12 -0.4 518,893 + HER17_RS02320 0.12 -0.5 518,906 + HER17_RS02320 0.12 +0.2 518,906 + HER17_RS02320 0.12 +0.4 518,906 + HER17_RS02320 0.12 +0.4 518,907 - HER17_RS02320 0.12 -0.3 518,907 - HER17_RS02320 0.12 -0.1 518,907 - HER17_RS02320 0.12 +2.1 518,907 - HER17_RS02320 0.12 -0.0 518,909 - HER17_RS02320 0.12 +0.3 518,942 + HER17_RS02320 0.14 -0.1 518,942 + HER17_RS02320 0.14 +0.6 518,942 + HER17_RS02320 0.14 -2.2 518,943 - HER17_RS02320 0.14 +0.2 518,943 - HER17_RS02320 0.14 -1.1 518,943 - HER17_RS02320 0.14 +0.4 518,949 + HER17_RS02320 0.14 +1.2 518,950 - HER17_RS02320 0.14 -0.4 518,950 - HER17_RS02320 0.14 +0.7 518,950 - HER17_RS02320 0.14 +0.0 518,988 - HER17_RS02320 0.16 +0.1 519,016 + HER17_RS02320 0.17 -0.4 519,028 + HER17_RS02320 0.18 +0.3 519,029 - HER17_RS02320 0.18 -0.1 519,029 - HER17_RS02320 0.18 -0.6 519,093 + HER17_RS02320 0.21 -0.1 519,099 - HER17_RS02320 0.21 +0.1 519,261 + HER17_RS02320 0.29 +0.2 519,380 + HER17_RS02320 0.35 +0.5 519,380 + HER17_RS02320 0.35 -1.9 519,380 + HER17_RS02320 0.35 -0.3
Or see this region's nucleotide sequence