Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01840

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01835 and HER17_RS01840 are separated by 26 nucleotidesHER17_RS01840 and HER17_RS01845 overlap by 4 nucleotides HER17_RS01835: HER17_RS01835 - siroheme synthase CysG, at 428,660 to 430,039 _RS01835 HER17_RS01840: HER17_RS01840 - nitrite reductase small subunit NirD, at 430,066 to 430,434 _RS01840 HER17_RS01845: HER17_RS01845 - nitrite reductase large subunit NirB, at 430,431 to 432,983 _RS01845 Position (kb) 430 431Strain fitness (log2 ratio) -2 -1 0 1 2at 429.124 kb on + strand, within HER17_RS01835at 429.219 kb on + strand, within HER17_RS01835at 429.332 kb on + strand, within HER17_RS01835at 429.332 kb on + strand, within HER17_RS01835at 429.422 kb on + strand, within HER17_RS01835at 429.488 kb on + strand, within HER17_RS01835at 429.526 kb on + strand, within HER17_RS01835at 429.527 kb on - strand, within HER17_RS01835at 429.527 kb on - strand, within HER17_RS01835at 429.570 kb on + strand, within HER17_RS01835at 429.570 kb on + strand, within HER17_RS01835at 429.571 kb on - strand, within HER17_RS01835at 429.571 kb on - strand, within HER17_RS01835at 429.571 kb on - strand, within HER17_RS01835at 429.605 kb on - strand, within HER17_RS01835at 429.703 kb on + strand, within HER17_RS01835at 429.703 kb on + strand, within HER17_RS01835at 429.703 kb on + strand, within HER17_RS01835at 429.703 kb on + strand, within HER17_RS01835at 429.704 kb on - strand, within HER17_RS01835at 429.735 kb on - strand, within HER17_RS01835at 429.771 kb on + strand, within HER17_RS01835at 429.772 kb on - strand, within HER17_RS01835at 429.782 kb on - strand, within HER17_RS01835at 429.857 kb on + strand, within HER17_RS01835at 429.857 kb on + strand, within HER17_RS01835at 429.962 kb on - strandat 429.971 kb on + strandat 429.986 kb on + strandat 429.993 kb on - strandat 429.993 kb on - strandat 429.993 kb on - strandat 430.023 kb on - strandat 430.041 kb on + strandat 430.041 kb on + strandat 430.042 kb on - strandat 430.064 kb on + strandat 430.064 kb on + strandat 430.068 kb on - strandat 430.086 kb on + strandat 430.087 kb on - strandat 430.087 kb on - strandat 430.117 kb on + strand, within HER17_RS01840at 430.117 kb on + strand, within HER17_RS01840at 430.117 kb on + strand, within HER17_RS01840at 430.117 kb on + strand, within HER17_RS01840at 430.117 kb on + strand, within HER17_RS01840at 430.118 kb on - strand, within HER17_RS01840at 430.118 kb on - strand, within HER17_RS01840at 430.118 kb on - strand, within HER17_RS01840at 430.138 kb on + strand, within HER17_RS01840at 430.139 kb on - strand, within HER17_RS01840at 430.151 kb on + strand, within HER17_RS01840at 430.151 kb on + strand, within HER17_RS01840at 430.151 kb on + strand, within HER17_RS01840at 430.151 kb on + strand, within HER17_RS01840at 430.151 kb on + strand, within HER17_RS01840at 430.151 kb on + strand, within HER17_RS01840at 430.151 kb on + strand, within HER17_RS01840at 430.152 kb on - strand, within HER17_RS01840at 430.152 kb on - strand, within HER17_RS01840at 430.166 kb on + strand, within HER17_RS01840at 430.196 kb on + strand, within HER17_RS01840at 430.197 kb on - strand, within HER17_RS01840at 430.262 kb on - strand, within HER17_RS01840at 430.273 kb on + strand, within HER17_RS01840at 430.276 kb on + strand, within HER17_RS01840at 430.276 kb on + strand, within HER17_RS01840at 430.277 kb on - strand, within HER17_RS01840at 430.316 kb on + strand, within HER17_RS01840at 430.317 kb on - strand, within HER17_RS01840at 430.317 kb on - strand, within HER17_RS01840at 430.406 kb on - strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.410 kb on + strandat 430.411 kb on - strandat 430.411 kb on - strandat 430.411 kb on - strandat 430.411 kb on - strandat 430.414 kb on + strandat 430.415 kb on - strandat 430.415 kb on - strandat 430.550 kb on + strandat 430.613 kb on + strandat 430.614 kb on - strandat 430.614 kb on - strandat 430.614 kb on - strandat 430.614 kb on - strandat 430.615 kb on + strandat 430.615 kb on + strandat 430.615 kb on + strandat 430.615 kb on + strandat 430.615 kb on + strandat 430.616 kb on - strandat 430.616 kb on - strandat 430.616 kb on - strandat 430.616 kb on - strandat 430.616 kb on - strandat 430.659 kb on - strandat 430.688 kb on + strand, within HER17_RS01845at 430.689 kb on - strand, within HER17_RS01845at 430.696 kb on + strand, within HER17_RS01845at 430.736 kb on + strand, within HER17_RS01845at 430.737 kb on - strand, within HER17_RS01845at 430.737 kb on - strand, within HER17_RS01845at 430.737 kb on - strand, within HER17_RS01845at 430.737 kb on - strand, within HER17_RS01845at 430.765 kb on + strand, within HER17_RS01845at 430.765 kb on + strand, within HER17_RS01845at 430.765 kb on + strand, within HER17_RS01845at 430.790 kb on - strand, within HER17_RS01845at 430.813 kb on - strand, within HER17_RS01845at 430.813 kb on - strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.866 kb on + strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.867 kb on - strand, within HER17_RS01845at 430.870 kb on + strand, within HER17_RS01845at 430.870 kb on + strand, within HER17_RS01845at 430.870 kb on + strand, within HER17_RS01845at 430.870 kb on + strand, within HER17_RS01845at 430.871 kb on - strand, within HER17_RS01845at 430.871 kb on - strand, within HER17_RS01845at 430.871 kb on - strand, within HER17_RS01845at 430.871 kb on - strand, within HER17_RS01845at 430.871 kb on - strand, within HER17_RS01845at 430.871 kb on - strand, within HER17_RS01845at 431.075 kb on + strand, within HER17_RS01845at 431.075 kb on + strand, within HER17_RS01845at 431.075 kb on + strand, within HER17_RS01845at 431.075 kb on + strand, within HER17_RS01845at 431.076 kb on - strand, within HER17_RS01845at 431.076 kb on - strand, within HER17_RS01845at 431.079 kb on + strand, within HER17_RS01845at 431.145 kb on + strand, within HER17_RS01845at 431.145 kb on + strand, within HER17_RS01845at 431.145 kb on + strand, within HER17_RS01845at 431.145 kb on + strand, within HER17_RS01845at 431.146 kb on - strand, within HER17_RS01845at 431.146 kb on - strand, within HER17_RS01845at 431.146 kb on - strand, within HER17_RS01845at 431.146 kb on - strand, within HER17_RS01845at 431.146 kb on - strand, within HER17_RS01845at 431.203 kb on + strand, within HER17_RS01845at 431.203 kb on + strand, within HER17_RS01845at 431.203 kb on + strand, within HER17_RS01845at 431.203 kb on + strand, within HER17_RS01845at 431.203 kb on + strand, within HER17_RS01845at 431.204 kb on - strand, within HER17_RS01845at 431.204 kb on - strand, within HER17_RS01845at 431.212 kb on + strand, within HER17_RS01845at 431.212 kb on + strand, within HER17_RS01845at 431.213 kb on - strand, within HER17_RS01845at 431.213 kb on - strand, within HER17_RS01845at 431.213 kb on - strand, within HER17_RS01845at 431.290 kb on + strand, within HER17_RS01845at 431.290 kb on + strand, within HER17_RS01845at 431.290 kb on + strand, within HER17_RS01845at 431.290 kb on + strand, within HER17_RS01845at 431.291 kb on - strand, within HER17_RS01845at 431.291 kb on - strand, within HER17_RS01845at 431.291 kb on - strand, within HER17_RS01845at 431.291 kb on - strand, within HER17_RS01845at 431.291 kb on - strand, within HER17_RS01845at 431.294 kb on + strand, within HER17_RS01845at 431.295 kb on - strand, within HER17_RS01845at 431.295 kb on - strand, within HER17_RS01845at 431.368 kb on + strand, within HER17_RS01845at 431.369 kb on - strand, within HER17_RS01845at 431.411 kb on + strand, within HER17_RS01845at 431.412 kb on - strand, within HER17_RS01845

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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429,124 + HER17_RS01835 0.34 -0.5
429,219 + HER17_RS01835 0.41 -0.7
429,332 + HER17_RS01835 0.49 -0.8
429,332 + HER17_RS01835 0.49 -0.3
429,422 + HER17_RS01835 0.55 -0.3
429,488 + HER17_RS01835 0.60 -0.5
429,526 + HER17_RS01835 0.63 +0.1
429,527 - HER17_RS01835 0.63 +0.6
429,527 - HER17_RS01835 0.63 +0.1
429,570 + HER17_RS01835 0.66 -0.6
429,570 + HER17_RS01835 0.66 +1.0
429,571 - HER17_RS01835 0.66 +0.9
429,571 - HER17_RS01835 0.66 -0.4
429,571 - HER17_RS01835 0.66 +0.9
429,605 - HER17_RS01835 0.68 -0.1
429,703 + HER17_RS01835 0.76 +0.6
429,703 + HER17_RS01835 0.76 +0.5
429,703 + HER17_RS01835 0.76 +1.1
429,703 + HER17_RS01835 0.76 +0.0
429,704 - HER17_RS01835 0.76 -0.2
429,735 - HER17_RS01835 0.78 +0.4
429,771 + HER17_RS01835 0.81 +0.5
429,772 - HER17_RS01835 0.81 -0.1
429,782 - HER17_RS01835 0.81 -0.1
429,857 + HER17_RS01835 0.87 -0.4
429,857 + HER17_RS01835 0.87 -1.6
429,962 - -0.8
429,971 + +0.4
429,986 + +0.4
429,993 - -0.5
429,993 - +0.1
429,993 - -0.1
430,023 - -0.6
430,041 + -0.6
430,041 + +0.4
430,042 - +0.1
430,064 + +0.3
430,064 + +0.8
430,068 - -0.6
430,086 + +0.1
430,087 - -0.2
430,087 - -0.2
430,117 + HER17_RS01840 0.14 +0.5
430,117 + HER17_RS01840 0.14 +0.2
430,117 + HER17_RS01840 0.14 -0.1
430,117 + HER17_RS01840 0.14 -1.6
430,117 + HER17_RS01840 0.14 +0.1
430,118 - HER17_RS01840 0.14 -0.4
430,118 - HER17_RS01840 0.14 +0.8
430,118 - HER17_RS01840 0.14 -0.1
430,138 + HER17_RS01840 0.20 -0.5
430,139 - HER17_RS01840 0.20 +0.6
430,151 + HER17_RS01840 0.23 -0.1
430,151 + HER17_RS01840 0.23 -0.1
430,151 + HER17_RS01840 0.23 -0.3
430,151 + HER17_RS01840 0.23 +1.0
430,151 + HER17_RS01840 0.23 -0.1
430,151 + HER17_RS01840 0.23 -0.6
430,151 + HER17_RS01840 0.23 +0.2
430,152 - HER17_RS01840 0.23 +0.6
430,152 - HER17_RS01840 0.23 +0.5
430,166 + HER17_RS01840 0.27 +0.1
430,196 + HER17_RS01840 0.35 +0.9
430,197 - HER17_RS01840 0.36 +0.3
430,262 - HER17_RS01840 0.53 +0.1
430,273 + HER17_RS01840 0.56 +0.4
430,276 + HER17_RS01840 0.57 -0.1
430,276 + HER17_RS01840 0.57 +0.6
430,277 - HER17_RS01840 0.57 -0.1
430,316 + HER17_RS01840 0.68 -0.3
430,317 - HER17_RS01840 0.68 -0.0
430,317 - HER17_RS01840 0.68 +0.1
430,406 - +1.8
430,410 + +0.8
430,410 + +0.3
430,410 + +0.2
430,410 + +0.5
430,410 + +0.5
430,410 + +0.6
430,410 + -0.8
430,410 + -0.3
430,410 + +0.2
430,410 + -0.7
430,411 - +0.4
430,411 - -0.2
430,411 - +0.1
430,411 - +0.0
430,414 + +0.0
430,415 - +0.3
430,415 - +0.7
430,550 + -0.2
430,613 + +0.5
430,614 - +0.4
430,614 - -0.4
430,614 - -0.5
430,614 - +0.2
430,615 + -0.3
430,615 + +0.3
430,615 + +0.1
430,615 + +0.7
430,615 + -0.1
430,616 - +0.1
430,616 - -0.5
430,616 - +0.3
430,616 - +1.2
430,616 - -1.6
430,659 - +0.6
430,688 + HER17_RS01845 0.10 +0.0
430,689 - HER17_RS01845 0.10 -0.1
430,696 + HER17_RS01845 0.10 -0.1
430,736 + HER17_RS01845 0.12 -0.4
430,737 - HER17_RS01845 0.12 +0.7
430,737 - HER17_RS01845 0.12 +0.8
430,737 - HER17_RS01845 0.12 -0.2
430,737 - HER17_RS01845 0.12 -0.1
430,765 + HER17_RS01845 0.13 -0.5
430,765 + HER17_RS01845 0.13 +0.5
430,765 + HER17_RS01845 0.13 -1.0
430,790 - HER17_RS01845 0.14 -0.5
430,813 - HER17_RS01845 0.15 -0.4
430,813 - HER17_RS01845 0.15 +0.0
430,866 + HER17_RS01845 0.17 -0.2
430,866 + HER17_RS01845 0.17 -0.1
430,866 + HER17_RS01845 0.17 +0.4
430,866 + HER17_RS01845 0.17 +0.3
430,866 + HER17_RS01845 0.17 -1.9
430,866 + HER17_RS01845 0.17 +0.8
430,866 + HER17_RS01845 0.17 -0.4
430,866 + HER17_RS01845 0.17 -0.2
430,866 + HER17_RS01845 0.17 +0.4
430,866 + HER17_RS01845 0.17 +0.5
430,866 + HER17_RS01845 0.17 -0.1
430,866 + HER17_RS01845 0.17 +1.0
430,866 + HER17_RS01845 0.17 +0.3
430,866 + HER17_RS01845 0.17 +1.3
430,866 + HER17_RS01845 0.17 -0.6
430,867 - HER17_RS01845 0.17 +0.1
430,867 - HER17_RS01845 0.17 +0.2
430,867 - HER17_RS01845 0.17 +2.4
430,867 - HER17_RS01845 0.17 -0.2
430,867 - HER17_RS01845 0.17 -1.0
430,867 - HER17_RS01845 0.17 -0.5
430,867 - HER17_RS01845 0.17 -0.4
430,867 - HER17_RS01845 0.17 +0.9
430,867 - HER17_RS01845 0.17 +1.3
430,867 - HER17_RS01845 0.17 -0.4
430,867 - HER17_RS01845 0.17 -0.2
430,867 - HER17_RS01845 0.17 -0.1
430,870 + HER17_RS01845 0.17 +0.5
430,870 + HER17_RS01845 0.17 +0.3
430,870 + HER17_RS01845 0.17 -0.5
430,870 + HER17_RS01845 0.17 +0.3
430,871 - HER17_RS01845 0.17 +0.1
430,871 - HER17_RS01845 0.17 +0.9
430,871 - HER17_RS01845 0.17 -1.5
430,871 - HER17_RS01845 0.17 +0.1
430,871 - HER17_RS01845 0.17 +0.1
430,871 - HER17_RS01845 0.17 +0.1
431,075 + HER17_RS01845 0.25 +0.8
431,075 + HER17_RS01845 0.25 -0.4
431,075 + HER17_RS01845 0.25 +0.1
431,075 + HER17_RS01845 0.25 -0.4
431,076 - HER17_RS01845 0.25 -1.1
431,076 - HER17_RS01845 0.25 +0.0
431,079 + HER17_RS01845 0.25 -0.2
431,145 + HER17_RS01845 0.28 +0.8
431,145 + HER17_RS01845 0.28 -0.5
431,145 + HER17_RS01845 0.28 +0.1
431,145 + HER17_RS01845 0.28 -0.2
431,146 - HER17_RS01845 0.28 -0.0
431,146 - HER17_RS01845 0.28 -0.3
431,146 - HER17_RS01845 0.28 -0.4
431,146 - HER17_RS01845 0.28 +0.0
431,146 - HER17_RS01845 0.28 +0.0
431,203 + HER17_RS01845 0.30 +0.3
431,203 + HER17_RS01845 0.30 -0.1
431,203 + HER17_RS01845 0.30 +0.1
431,203 + HER17_RS01845 0.30 -0.6
431,203 + HER17_RS01845 0.30 -2.3
431,204 - HER17_RS01845 0.30 -1.1
431,204 - HER17_RS01845 0.30 +1.4
431,212 + HER17_RS01845 0.31 -1.8
431,212 + HER17_RS01845 0.31 -0.1
431,213 - HER17_RS01845 0.31 -0.4
431,213 - HER17_RS01845 0.31 +0.4
431,213 - HER17_RS01845 0.31 +0.4
431,290 + HER17_RS01845 0.34 +0.5
431,290 + HER17_RS01845 0.34 -0.1
431,290 + HER17_RS01845 0.34 +0.7
431,290 + HER17_RS01845 0.34 -0.7
431,291 - HER17_RS01845 0.34 +0.4
431,291 - HER17_RS01845 0.34 +0.5
431,291 - HER17_RS01845 0.34 -0.4
431,291 - HER17_RS01845 0.34 -0.9
431,291 - HER17_RS01845 0.34 -0.3
431,294 + HER17_RS01845 0.34 -0.3
431,295 - HER17_RS01845 0.34 +0.5
431,295 - HER17_RS01845 0.34 +0.9
431,368 + HER17_RS01845 0.37 -1.1
431,369 - HER17_RS01845 0.37 +0.7
431,411 + HER17_RS01845 0.38 -0.4
431,412 - HER17_RS01845 0.38 +0.1

Or see this region's nucleotide sequence