Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00535 and HER17_RS00540 are separated by 278 nucleotides HER17_RS00540 and HER17_RS00545 are separated by 310 nucleotides
HER17_RS00535: HER17_RS00535 - methyl-accepting chemotaxis protein, at 127,917 to 129,431
_RS00535
HER17_RS00540: HER17_RS00540 - methyl-accepting chemotaxis protein, at 129,710 to 131,389
_RS00540
HER17_RS00545: HER17_RS00545 - GntP family transporter, at 131,700 to 133,058
_RS00545
Position (kb) 129
130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 128.724 kb on - strand, within HER17_RS00535 at 128.759 kb on - strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.869 kb on + strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.870 kb on - strand, within HER17_RS00535 at 128.872 kb on + strand, within HER17_RS00535 at 128.872 kb on + strand, within HER17_RS00535 at 128.872 kb on + strand, within HER17_RS00535 at 128.873 kb on - strand, within HER17_RS00535 at 128.948 kb on + strand, within HER17_RS00535 at 128.949 kb on - strand, within HER17_RS00535 at 128.964 kb on + strand, within HER17_RS00535 at 128.965 kb on - strand, within HER17_RS00535 at 128.965 kb on - strand, within HER17_RS00535 at 129.090 kb on - strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.215 kb on + strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.216 kb on - strand, within HER17_RS00535 at 129.219 kb on + strand, within HER17_RS00535 at 129.219 kb on + strand, within HER17_RS00535 at 129.220 kb on - strand, within HER17_RS00535 at 129.242 kb on + strand, within HER17_RS00535 at 129.248 kb on + strand, within HER17_RS00535 at 129.249 kb on - strand, within HER17_RS00535 at 129.249 kb on - strand, within HER17_RS00535 at 129.264 kb on + strand, within HER17_RS00535 at 129.264 kb on + strand, within HER17_RS00535 at 129.265 kb on - strand, within HER17_RS00535 at 129.311 kb on + strand at 129.311 kb on + strand at 129.311 kb on + strand at 129.312 kb on - strand at 129.312 kb on - strand at 129.314 kb on + strand at 129.315 kb on - strand at 129.354 kb on + strand at 129.355 kb on - strand at 129.355 kb on - strand at 129.355 kb on - strand at 129.357 kb on + strand at 129.357 kb on + strand at 129.358 kb on - strand at 129.371 kb on + strand at 129.372 kb on - strand at 129.422 kb on + strand at 129.435 kb on - strand at 129.435 kb on - strand at 129.447 kb on + strand at 129.447 kb on + strand at 129.448 kb on - strand at 129.448 kb on - strand at 129.448 kb on - strand at 129.460 kb on + strand at 129.460 kb on + strand at 129.460 kb on + strand at 129.466 kb on + strand at 129.467 kb on - strand at 129.467 kb on - strand at 129.469 kb on + strand at 129.470 kb on - strand at 129.503 kb on + strand at 129.504 kb on - strand at 129.504 kb on - strand at 129.518 kb on + strand at 129.535 kb on + strand at 129.535 kb on + strand at 129.536 kb on - strand at 129.536 kb on - strand at 129.540 kb on - strand at 129.540 kb on - strand at 129.553 kb on + strand at 129.553 kb on + strand at 129.553 kb on + strand at 129.553 kb on + strand at 129.554 kb on - strand at 129.583 kb on + strand at 129.588 kb on + strand at 129.589 kb on - strand at 129.705 kb on + strand at 129.706 kb on - strand at 129.711 kb on + strand at 129.711 kb on + strand at 129.711 kb on + strand at 129.712 kb on - strand at 129.805 kb on + strand at 129.805 kb on + strand at 129.805 kb on + strand at 129.806 kb on - strand at 129.806 kb on - strand at 130.607 kb on - strand, within HER17_RS00540 at 130.616 kb on - strand, within HER17_RS00540 at 130.616 kb on - strand, within HER17_RS00540 at 130.616 kb on - strand, within HER17_RS00540 at 130.616 kb on - strand, within HER17_RS00540 at 130.737 kb on - strand, within HER17_RS00540 at 130.807 kb on + strand, within HER17_RS00540 at 130.807 kb on + strand, within HER17_RS00540 at 130.807 kb on + strand, within HER17_RS00540 at 130.808 kb on - strand, within HER17_RS00540 at 130.808 kb on - strand, within HER17_RS00540 at 130.828 kb on + strand, within HER17_RS00540 at 130.828 kb on + strand, within HER17_RS00540 at 130.828 kb on + strand, within HER17_RS00540 at 130.829 kb on - strand, within HER17_RS00540 at 130.871 kb on + strand, within HER17_RS00540 at 130.941 kb on - strand, within HER17_RS00540 at 130.941 kb on - strand, within HER17_RS00540 at 130.982 kb on + strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.983 kb on - strand, within HER17_RS00540 at 130.996 kb on + strand, within HER17_RS00540 at 131.009 kb on + strand, within HER17_RS00540 at 131.014 kb on - strand, within HER17_RS00540 at 131.080 kb on - strand, within HER17_RS00540 at 131.266 kb on + strand at 131.305 kb on + strand at 131.305 kb on + strand at 131.416 kb on + strand at 131.416 kb on + strand at 131.417 kb on - strand at 131.417 kb on - strand at 131.436 kb on + strand at 131.436 kb on + strand at 131.436 kb on + strand at 131.437 kb on - strand at 131.437 kb on - strand at 131.437 kb on - strand at 131.485 kb on + strand at 131.485 kb on + strand at 131.485 kb on + strand at 131.485 kb on + strand at 131.489 kb on + strand at 131.489 kb on + strand at 131.489 kb on + strand at 131.489 kb on + strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.490 kb on - strand at 131.555 kb on - strand at 131.557 kb on + strand at 131.559 kb on + strand at 131.559 kb on + strand at 131.559 kb on + strand at 131.560 kb on - strand at 131.560 kb on - strand at 131.560 kb on - strand at 131.591 kb on + strand at 131.591 kb on + strand at 131.591 kb on + strand at 131.592 kb on - strand at 131.592 kb on - strand at 131.593 kb on + strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.594 kb on - strand at 131.599 kb on + strand at 131.622 kb on + strand at 131.622 kb on + strand at 131.623 kb on - strand at 131.623 kb on - strand at 131.632 kb on - strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.635 kb on + strand at 131.636 kb on - strand at 131.636 kb on - strand at 131.636 kb on - strand at 131.648 kb on + strand at 131.655 kb on + strand at 131.701 kb on + strand at 131.702 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 128,724 - HER17_RS00535 0.53 -0.4 128,759 - HER17_RS00535 0.56 -0.8 128,869 + HER17_RS00535 0.63 +0.2 128,869 + HER17_RS00535 0.63 +1.2 128,869 + HER17_RS00535 0.63 -0.1 128,869 + HER17_RS00535 0.63 +0.5 128,869 + HER17_RS00535 0.63 +0.1 128,870 - HER17_RS00535 0.63 +1.2 128,870 - HER17_RS00535 0.63 +0.3 128,870 - HER17_RS00535 0.63 -0.1 128,870 - HER17_RS00535 0.63 -1.3 128,870 - HER17_RS00535 0.63 +0.4 128,872 + HER17_RS00535 0.63 -1.0 128,872 + HER17_RS00535 0.63 -0.8 128,872 + HER17_RS00535 0.63 -2.7 128,873 - HER17_RS00535 0.63 -0.5 128,948 + HER17_RS00535 0.68 +0.5 128,949 - HER17_RS00535 0.68 -0.3 128,964 + HER17_RS00535 0.69 -0.9 128,965 - HER17_RS00535 0.69 -0.3 128,965 - HER17_RS00535 0.69 -0.2 129,090 - HER17_RS00535 0.77 +0.2 129,215 + HER17_RS00535 0.86 -2.4 129,215 + HER17_RS00535 0.86 +0.3 129,215 + HER17_RS00535 0.86 -0.2 129,215 + HER17_RS00535 0.86 -0.0 129,215 + HER17_RS00535 0.86 +0.5 129,215 + HER17_RS00535 0.86 +1.0 129,215 + HER17_RS00535 0.86 +0.5 129,216 - HER17_RS00535 0.86 +0.3 129,216 - HER17_RS00535 0.86 -0.2 129,216 - HER17_RS00535 0.86 -0.0 129,216 - HER17_RS00535 0.86 +0.1 129,216 - HER17_RS00535 0.86 -0.8 129,216 - HER17_RS00535 0.86 +0.5 129,216 - HER17_RS00535 0.86 -0.3 129,216 - HER17_RS00535 0.86 -0.2 129,219 + HER17_RS00535 0.86 +0.5 129,219 + HER17_RS00535 0.86 +0.7 129,220 - HER17_RS00535 0.86 +0.7 129,242 + HER17_RS00535 0.87 +0.6 129,248 + HER17_RS00535 0.88 -0.0 129,249 - HER17_RS00535 0.88 +1.1 129,249 - HER17_RS00535 0.88 +0.6 129,264 + HER17_RS00535 0.89 -0.2 129,264 + HER17_RS00535 0.89 -0.4 129,265 - HER17_RS00535 0.89 +0.9 129,311 + +0.8 129,311 + -2.3 129,311 + +0.9 129,312 - -0.7 129,312 - -0.7 129,314 + -0.4 129,315 - -0.0 129,354 + +0.1 129,355 - +0.2 129,355 - +0.2 129,355 - -0.5 129,357 + -0.0 129,357 + -0.8 129,358 - -1.3 129,371 + -0.4 129,372 - +2.1 129,422 + +1.2 129,435 - -0.3 129,435 - +0.1 129,447 + +0.1 129,447 + -0.0 129,448 - -0.1 129,448 - -0.4 129,448 - +0.9 129,460 + +0.6 129,460 + -1.2 129,460 + +0.4 129,466 + +0.4 129,467 - +0.3 129,467 - +1.0 129,469 + -0.6 129,470 - +0.1 129,503 + +0.2 129,504 - -0.4 129,504 - -0.1 129,518 + +0.0 129,535 + +0.4 129,535 + -0.5 129,536 - +0.2 129,536 - -0.3 129,540 - +0.4 129,540 - -0.4 129,553 + -1.1 129,553 + +0.5 129,553 + +0.6 129,553 + +0.1 129,554 - -0.2 129,583 + +0.2 129,588 + +0.3 129,589 - +0.5 129,705 + +0.2 129,706 - +0.1 129,711 + -0.2 129,711 + -0.0 129,711 + -0.1 129,712 - +0.5 129,805 + -0.8 129,805 + +0.7 129,805 + -0.2 129,806 - +0.1 129,806 - +0.5 130,607 - HER17_RS00540 0.53 +1.1 130,616 - HER17_RS00540 0.54 -0.1 130,616 - HER17_RS00540 0.54 -1.2 130,616 - HER17_RS00540 0.54 -0.5 130,616 - HER17_RS00540 0.54 +1.1 130,737 - HER17_RS00540 0.61 +1.2 130,807 + HER17_RS00540 0.65 -0.3 130,807 + HER17_RS00540 0.65 +0.1 130,807 + HER17_RS00540 0.65 -0.8 130,808 - HER17_RS00540 0.65 -0.9 130,808 - HER17_RS00540 0.65 +0.1 130,828 + HER17_RS00540 0.67 +0.6 130,828 + HER17_RS00540 0.67 +0.1 130,828 + HER17_RS00540 0.67 -0.8 130,829 - HER17_RS00540 0.67 +0.1 130,871 + HER17_RS00540 0.69 -0.5 130,941 - HER17_RS00540 0.73 -0.8 130,941 - HER17_RS00540 0.73 +1.9 130,982 + HER17_RS00540 0.76 -0.5 130,983 - HER17_RS00540 0.76 +0.3 130,983 - HER17_RS00540 0.76 +0.1 130,983 - HER17_RS00540 0.76 -0.6 130,983 - HER17_RS00540 0.76 +1.0 130,983 - HER17_RS00540 0.76 -0.9 130,996 + HER17_RS00540 0.77 -0.2 131,009 + HER17_RS00540 0.77 +0.2 131,014 - HER17_RS00540 0.78 +0.8 131,080 - HER17_RS00540 0.82 +0.2 131,266 + +0.4 131,305 + -2.4 131,305 + -1.4 131,416 + +0.3 131,416 + +0.1 131,417 - +0.5 131,417 - +0.2 131,436 + -0.1 131,436 + -0.4 131,436 + -0.7 131,437 - +1.2 131,437 - -0.1 131,437 - -0.9 131,485 + +0.3 131,485 + -0.7 131,485 + -0.7 131,485 + -0.2 131,489 + -0.7 131,489 + -0.2 131,489 + +0.5 131,489 + +0.0 131,490 - +1.0 131,490 - +0.5 131,490 - +0.1 131,490 - -0.6 131,490 - +0.1 131,490 - -0.1 131,490 - +0.0 131,555 - -0.3 131,557 + +0.0 131,559 + +0.3 131,559 + +0.2 131,559 + -0.3 131,560 - +0.2 131,560 - -0.7 131,560 - +0.4 131,591 + -0.4 131,591 + +0.2 131,591 + +0.1 131,592 - -0.5 131,592 - +0.6 131,593 + +0.2 131,594 - -0.1 131,594 - -0.9 131,594 - +0.1 131,594 - +0.7 131,594 - -1.6 131,594 - -0.6 131,599 + +0.2 131,622 + +0.7 131,622 + -1.4 131,623 - +0.2 131,623 - -0.0 131,632 - -0.6 131,635 + +0.0 131,635 + -0.1 131,635 + +0.3 131,635 + +0.3 131,635 + +0.7 131,635 + -1.8 131,636 - -0.3 131,636 - +0.2 131,636 - +0.4 131,648 + -1.0 131,655 + -0.0 131,701 + +0.7 131,702 - -0.9
Or see this region's nucleotide sequence