Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00245

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00240 and HER17_RS00245 are separated by 87 nucleotidesHER17_RS00245 and HER17_RS00250 are separated by 227 nucleotidesHER17_RS00250 and HER17_RS00255 are separated by 192 nucleotidesHER17_RS00255 and HER17_RS21885 are separated by 70 nucleotides HER17_RS00240: HER17_RS00240 - ABC transporter ATP-binding protein, at 53,973 to 54,983 _RS00240 HER17_RS00245: HER17_RS00245 - hypothetical protein, at 55,071 to 55,550 _RS00245 HER17_RS00250: HER17_RS00250 - hypothetical protein, at 55,778 to 56,116 _RS00250 HER17_RS00255: HER17_RS00255 - type I toxin-antitoxin system SymE family toxin, at 56,309 to 56,398 _RS00255 HER17_RS21885: HER17_RS21885 - hypothetical protein, at 56,469 to 56,627 _RS21885 Position (kb) 55 56Strain fitness (log2 ratio) -2 -1 0 1at 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.210 kb on + strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.211 kb on - strand, within HER17_RS00240at 54.213 kb on + strand, within HER17_RS00240at 54.214 kb on - strand, within HER17_RS00240at 54.297 kb on + strand, within HER17_RS00240at 54.318 kb on - strand, within HER17_RS00240at 54.318 kb on - strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.435 kb on + strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.436 kb on - strand, within HER17_RS00240at 54.452 kb on + strand, within HER17_RS00240at 54.452 kb on + strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.453 kb on - strand, within HER17_RS00240at 54.480 kb on - strand, within HER17_RS00240at 54.615 kb on + strand, within HER17_RS00240at 54.615 kb on + strand, within HER17_RS00240at 54.616 kb on - strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.653 kb on + strand, within HER17_RS00240at 54.654 kb on - strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.678 kb on + strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.679 kb on - strand, within HER17_RS00240at 54.707 kb on + strand, within HER17_RS00240at 54.743 kb on + strand, within HER17_RS00240at 54.743 kb on + strand, within HER17_RS00240at 54.755 kb on - strand, within HER17_RS00240at 54.755 kb on - strand, within HER17_RS00240at 54.824 kb on + strand, within HER17_RS00240at 54.911 kb on + strandat 54.919 kb on - strandat 54.919 kb on - strandat 54.968 kb on + strandat 54.969 kb on - strandat 54.981 kb on + strandat 54.981 kb on + strandat 55.002 kb on - strandat 55.002 kb on - strandat 55.063 kb on + strandat 55.086 kb on - strandat 55.174 kb on - strand, within HER17_RS00245at 55.199 kb on + strand, within HER17_RS00245at 55.229 kb on + strand, within HER17_RS00245at 55.461 kb on + strand, within HER17_RS00245at 55.584 kb on - strandat 55.622 kb on + strandat 55.627 kb on + strandat 55.627 kb on + strandat 55.627 kb on + strandat 55.628 kb on - strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.631 kb on + strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.632 kb on - strandat 55.646 kb on - strandat 55.664 kb on - strandat 55.857 kb on + strand, within HER17_RS00250at 55.914 kb on + strand, within HER17_RS00250at 55.914 kb on + strand, within HER17_RS00250at 55.915 kb on - strand, within HER17_RS00250at 55.915 kb on - strand, within HER17_RS00250at 56.044 kb on - strand, within HER17_RS00250at 56.107 kb on - strandat 56.107 kb on - strandat 56.122 kb on + strandat 56.122 kb on + strandat 56.122 kb on + strandat 56.143 kb on + strandat 56.144 kb on - strandat 56.169 kb on - strandat 56.169 kb on - strandat 56.181 kb on - strandat 56.202 kb on - strandat 56.202 kb on - strandat 56.220 kb on + strandat 56.220 kb on + strandat 56.220 kb on + strandat 56.220 kb on + strandat 56.221 kb on - strandat 56.221 kb on - strandat 56.221 kb on - strandat 56.290 kb on + strandat 56.291 kb on - strandat 56.296 kb on + strandat 56.467 kb on + strandat 56.491 kb on + strand, within HER17_RS21885at 56.491 kb on + strand, within HER17_RS21885at 56.517 kb on + strand, within HER17_RS21885

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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54,210 + HER17_RS00240 0.23 +0.4
54,210 + HER17_RS00240 0.23 +0.2
54,210 + HER17_RS00240 0.23 +0.1
54,210 + HER17_RS00240 0.23 -0.2
54,211 - HER17_RS00240 0.24 +0.4
54,211 - HER17_RS00240 0.24 -0.0
54,211 - HER17_RS00240 0.24 +0.4
54,213 + HER17_RS00240 0.24 +0.5
54,214 - HER17_RS00240 0.24 -0.3
54,297 + HER17_RS00240 0.32 +0.4
54,318 - HER17_RS00240 0.34 +0.3
54,318 - HER17_RS00240 0.34 -0.3
54,435 + HER17_RS00240 0.46 +0.6
54,435 + HER17_RS00240 0.46 -0.4
54,435 + HER17_RS00240 0.46 -0.4
54,435 + HER17_RS00240 0.46 +0.7
54,436 - HER17_RS00240 0.46 +0.4
54,436 - HER17_RS00240 0.46 +1.6
54,436 - HER17_RS00240 0.46 +0.3
54,452 + HER17_RS00240 0.47 +0.9
54,452 + HER17_RS00240 0.47 +0.2
54,453 - HER17_RS00240 0.47 -0.1
54,453 - HER17_RS00240 0.47 +0.1
54,453 - HER17_RS00240 0.47 +0.2
54,453 - HER17_RS00240 0.47 +0.7
54,480 - HER17_RS00240 0.50 +0.8
54,615 + HER17_RS00240 0.64 +0.3
54,615 + HER17_RS00240 0.64 -0.1
54,616 - HER17_RS00240 0.64 -0.6
54,653 + HER17_RS00240 0.67 +0.3
54,653 + HER17_RS00240 0.67 -1.7
54,653 + HER17_RS00240 0.67 -0.1
54,654 - HER17_RS00240 0.67 +0.4
54,678 + HER17_RS00240 0.70 +0.2
54,678 + HER17_RS00240 0.70 +0.0
54,678 + HER17_RS00240 0.70 -0.0
54,679 - HER17_RS00240 0.70 -0.0
54,679 - HER17_RS00240 0.70 -0.1
54,679 - HER17_RS00240 0.70 +1.4
54,679 - HER17_RS00240 0.70 +0.5
54,679 - HER17_RS00240 0.70 +0.6
54,707 + HER17_RS00240 0.73 +1.4
54,743 + HER17_RS00240 0.76 +0.1
54,743 + HER17_RS00240 0.76 +0.6
54,755 - HER17_RS00240 0.77 +0.1
54,755 - HER17_RS00240 0.77 +0.6
54,824 + HER17_RS00240 0.84 -0.3
54,911 + +0.0
54,919 - +0.8
54,919 - -0.4
54,968 + +0.3
54,969 - -0.4
54,981 + +0.6
54,981 + -0.6
55,002 - -0.2
55,002 - -0.7
55,063 + -1.4
55,086 - +0.1
55,174 - HER17_RS00245 0.21 +0.1
55,199 + HER17_RS00245 0.27 +0.8
55,229 + HER17_RS00245 0.33 +0.3
55,461 + HER17_RS00245 0.81 -0.9
55,584 - -0.5
55,622 + +0.9
55,627 + -0.7
55,627 + +0.0
55,627 + -0.0
55,628 - -1.2
55,631 + +0.1
55,631 + -1.2
55,631 + +0.7
55,631 + -0.2
55,632 - -1.8
55,632 - -0.8
55,632 - -0.1
55,632 - -1.5
55,646 - +0.2
55,664 - +0.4
55,857 + HER17_RS00250 0.23 -0.1
55,914 + HER17_RS00250 0.40 +0.1
55,914 + HER17_RS00250 0.40 -0.1
55,915 - HER17_RS00250 0.40 -0.3
55,915 - HER17_RS00250 0.40 +0.6
56,044 - HER17_RS00250 0.78 +0.3
56,107 - +0.1
56,107 - +0.3
56,122 + +0.1
56,122 + +0.4
56,122 + +0.2
56,143 + -0.3
56,144 - -0.6
56,169 - +0.3
56,169 - -0.6
56,181 - -0.1
56,202 - -1.3
56,202 - -0.9
56,220 + +0.4
56,220 + -0.8
56,220 + +0.1
56,220 + +0.1
56,221 - -0.0
56,221 - +1.3
56,221 - +0.2
56,290 + -0.8
56,291 - +0.2
56,296 + -0.1
56,467 + -0.2
56,491 + HER17_RS21885 0.14 +0.5
56,491 + HER17_RS21885 0.14 -1.0
56,517 + HER17_RS21885 0.30 -0.2

Or see this region's nucleotide sequence