Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00120 and HER17_RS00125 are separated by 75 nucleotides HER17_RS00125 and HER17_RS00130 are separated by 172 nucleotides HER17_RS00130 and HER17_RS00135 overlap by 4 nucleotides
HER17_RS00120: HER17_RS00120 - ABC transporter ATP-binding protein, at 25,217 to 27,022
_RS00120
HER17_RS00125: HER17_RS00125 - DUF1471 domain-containing protein, at 27,098 to 27,355
_RS00125
HER17_RS00130: HER17_RS00130 - aliphatic sulfonates ABC transporter ATP-binding protein, at 27,528 to 28,328
_RS00130
HER17_RS00135: HER17_RS00135 - aliphatic sulfonate ABC transporter permease SsuC, at 28,325 to 29,119
_RS00135
Position (kb) 27
28 Strain fitness (log2 ratio) -1
0
1
2 at 26.409 kb on - strand, within HER17_RS00120 at 26.409 kb on - strand, within HER17_RS00120 at 26.446 kb on + strand, within HER17_RS00120 at 26.494 kb on + strand, within HER17_RS00120 at 26.597 kb on - strand, within HER17_RS00120 at 26.632 kb on + strand, within HER17_RS00120 at 26.632 kb on + strand, within HER17_RS00120 at 26.734 kb on + strand, within HER17_RS00120 at 26.734 kb on + strand, within HER17_RS00120 at 26.765 kb on - strand, within HER17_RS00120 at 26.789 kb on + strand, within HER17_RS00120 at 26.789 kb on + strand, within HER17_RS00120 at 26.911 kb on + strand at 26.911 kb on + strand at 26.912 kb on - strand at 26.914 kb on + strand at 26.978 kb on + strand at 26.979 kb on - strand at 26.980 kb on + strand at 26.980 kb on + strand at 26.981 kb on - strand at 27.099 kb on + strand at 27.099 kb on + strand at 27.100 kb on - strand at 27.110 kb on - strand at 27.110 kb on - strand at 27.239 kb on + strand, within HER17_RS00125 at 27.239 kb on + strand, within HER17_RS00125 at 27.239 kb on + strand, within HER17_RS00125 at 27.239 kb on + strand, within HER17_RS00125 at 27.239 kb on + strand, within HER17_RS00125 at 27.240 kb on - strand, within HER17_RS00125 at 27.240 kb on - strand, within HER17_RS00125 at 27.240 kb on - strand, within HER17_RS00125 at 27.259 kb on + strand, within HER17_RS00125 at 27.259 kb on + strand, within HER17_RS00125 at 27.260 kb on - strand, within HER17_RS00125 at 27.260 kb on - strand, within HER17_RS00125 at 27.314 kb on - strand, within HER17_RS00125 at 27.362 kb on + strand at 27.362 kb on + strand at 27.363 kb on - strand at 27.500 kb on + strand at 27.500 kb on + strand at 27.501 kb on - strand at 27.529 kb on + strand at 27.529 kb on + strand at 27.529 kb on + strand at 27.531 kb on + strand at 27.531 kb on + strand at 27.531 kb on + strand at 27.532 kb on - strand at 27.549 kb on + strand at 27.707 kb on + strand, within HER17_RS00130 at 27.707 kb on + strand, within HER17_RS00130 at 27.762 kb on + strand, within HER17_RS00130 at 27.763 kb on - strand, within HER17_RS00130 at 27.763 kb on - strand, within HER17_RS00130 at 27.763 kb on - strand, within HER17_RS00130 at 27.987 kb on + strand, within HER17_RS00130 at 27.988 kb on - strand, within HER17_RS00130
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 26,409 - HER17_RS00120 0.66 +0.0 26,409 - HER17_RS00120 0.66 +1.4 26,446 + HER17_RS00120 0.68 -0.3 26,494 + HER17_RS00120 0.71 -0.8 26,597 - HER17_RS00120 0.76 -0.4 26,632 + HER17_RS00120 0.78 +0.7 26,632 + HER17_RS00120 0.78 +0.4 26,734 + HER17_RS00120 0.84 -0.0 26,734 + HER17_RS00120 0.84 -0.1 26,765 - HER17_RS00120 0.86 -0.2 26,789 + HER17_RS00120 0.87 -0.9 26,789 + HER17_RS00120 0.87 +0.0 26,911 + +0.4 26,911 + -0.5 26,912 - +0.1 26,914 + +0.3 26,978 + +0.4 26,979 - -0.7 26,980 + -0.5 26,980 + +0.1 26,981 - +0.4 27,099 + +0.1 27,099 + -0.2 27,100 - +0.2 27,110 - -0.2 27,110 - -0.1 27,239 + HER17_RS00125 0.55 -0.1 27,239 + HER17_RS00125 0.55 +0.2 27,239 + HER17_RS00125 0.55 +0.4 27,239 + HER17_RS00125 0.55 -0.4 27,239 + HER17_RS00125 0.55 +0.4 27,240 - HER17_RS00125 0.55 -0.4 27,240 - HER17_RS00125 0.55 -0.9 27,240 - HER17_RS00125 0.55 -0.0 27,259 + HER17_RS00125 0.62 +1.8 27,259 + HER17_RS00125 0.62 +0.1 27,260 - HER17_RS00125 0.63 +0.2 27,260 - HER17_RS00125 0.63 +0.6 27,314 - HER17_RS00125 0.84 -0.1 27,362 + -0.2 27,362 + +0.3 27,363 - -0.2 27,500 + -1.5 27,500 + -0.1 27,501 - -0.1 27,529 + +0.1 27,529 + +0.8 27,529 + -0.0 27,531 + +1.1 27,531 + -0.2 27,531 + -0.4 27,532 - -0.2 27,549 + +1.3 27,707 + HER17_RS00130 0.22 +0.6 27,707 + HER17_RS00130 0.22 -0.1 27,762 + HER17_RS00130 0.29 -0.3 27,763 - HER17_RS00130 0.29 -0.5 27,763 - HER17_RS00130 0.29 -0.2 27,763 - HER17_RS00130 0.29 +0.0 27,987 + HER17_RS00130 0.57 -0.2 27,988 - HER17_RS00130 0.57 +0.6
Or see this region's nucleotide sequence