Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS21475 and HER17_RS21480 are separated by 24 nucleotides HER17_RS21480 and HER17_RS21485 are separated by 78 nucleotides HER17_RS21485 and HER17_RS21490 are separated by 212 nucleotides
HER17_RS21475: HER17_RS21475 - thiol:disulfide interchange protein DsbA, at 4,815,626 to 4,816,249
_RS21475
HER17_RS21480: HER17_RS21480 - serine/threonine protein kinase, at 4,816,274 to 4,817,260
_RS21480
HER17_RS21485: HER17_RS21485 - YihD family protein, at 4,817,339 to 4,817,608
_RS21485
HER17_RS21490: HER17_RS21490 - molybdenum cofactor guanylyltransferase MobA, at 4,817,821 to 4,818,399
_RS21490
Position (kb) 4816
4817
4818 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4815.293 kb on - strand at 4815.293 kb on - strand at 4815.328 kb on - strand at 4815.420 kb on - strand at 4815.423 kb on - strand at 4815.463 kb on + strand at 4815.535 kb on + strand at 4815.554 kb on - strand at 4815.554 kb on - strand at 4815.555 kb on + strand at 4815.555 kb on + strand at 4815.556 kb on - strand at 4815.556 kb on - strand at 4815.585 kb on + strand at 4815.586 kb on - strand at 4815.587 kb on + strand at 4815.587 kb on + strand at 4815.587 kb on + strand at 4815.587 kb on + strand at 4815.588 kb on - strand at 4815.623 kb on + strand at 4815.623 kb on + strand at 4815.672 kb on - strand at 4815.720 kb on + strand, within HER17_RS21475 at 4815.721 kb on - strand, within HER17_RS21475 at 4815.721 kb on - strand, within HER17_RS21475 at 4815.724 kb on + strand, within HER17_RS21475 at 4815.756 kb on - strand, within HER17_RS21475 at 4815.814 kb on + strand, within HER17_RS21475 at 4815.815 kb on - strand, within HER17_RS21475 at 4815.875 kb on - strand, within HER17_RS21475 at 4816.107 kb on + strand, within HER17_RS21475 at 4816.153 kb on + strand, within HER17_RS21475 at 4816.153 kb on + strand, within HER17_RS21475 at 4816.163 kb on + strand, within HER17_RS21475 at 4816.163 kb on + strand, within HER17_RS21475 at 4816.164 kb on - strand, within HER17_RS21475 at 4816.167 kb on + strand, within HER17_RS21475 at 4816.168 kb on - strand, within HER17_RS21475 at 4816.204 kb on + strand at 4816.205 kb on - strand at 4816.289 kb on + strand at 4816.295 kb on + strand at 4816.296 kb on - strand at 4816.296 kb on - strand at 4816.330 kb on + strand at 4816.330 kb on + strand at 4816.331 kb on - strand at 4816.334 kb on + strand at 4816.432 kb on - strand, within HER17_RS21480 at 4816.432 kb on - strand, within HER17_RS21480 at 4816.435 kb on - strand, within HER17_RS21480 at 4816.435 kb on - strand, within HER17_RS21480 at 4816.506 kb on + strand, within HER17_RS21480 at 4816.506 kb on + strand, within HER17_RS21480 at 4816.506 kb on + strand, within HER17_RS21480 at 4816.507 kb on - strand, within HER17_RS21480 at 4816.515 kb on - strand, within HER17_RS21480 at 4816.515 kb on - strand, within HER17_RS21480 at 4816.534 kb on + strand, within HER17_RS21480 at 4816.534 kb on + strand, within HER17_RS21480 at 4816.534 kb on + strand, within HER17_RS21480 at 4816.535 kb on - strand, within HER17_RS21480 at 4816.535 kb on - strand, within HER17_RS21480 at 4816.571 kb on + strand, within HER17_RS21480 at 4816.572 kb on - strand, within HER17_RS21480 at 4816.572 kb on - strand, within HER17_RS21480 at 4816.581 kb on - strand, within HER17_RS21480 at 4816.620 kb on - strand, within HER17_RS21480 at 4816.642 kb on + strand, within HER17_RS21480 at 4816.754 kb on + strand, within HER17_RS21480 at 4816.754 kb on + strand, within HER17_RS21480 at 4816.754 kb on + strand, within HER17_RS21480 at 4816.755 kb on - strand, within HER17_RS21480 at 4816.763 kb on + strand, within HER17_RS21480 at 4816.763 kb on + strand, within HER17_RS21480 at 4816.806 kb on + strand, within HER17_RS21480 at 4816.895 kb on + strand, within HER17_RS21480 at 4816.896 kb on - strand, within HER17_RS21480 at 4816.896 kb on - strand, within HER17_RS21480 at 4816.968 kb on + strand, within HER17_RS21480 at 4816.968 kb on + strand, within HER17_RS21480 at 4816.990 kb on + strand, within HER17_RS21480 at 4817.012 kb on - strand, within HER17_RS21480 at 4817.012 kb on - strand, within HER17_RS21480 at 4817.047 kb on + strand, within HER17_RS21480 at 4817.113 kb on + strand, within HER17_RS21480 at 4817.137 kb on - strand, within HER17_RS21480 at 4817.137 kb on - strand, within HER17_RS21480 at 4817.151 kb on + strand, within HER17_RS21480 at 4817.151 kb on + strand, within HER17_RS21480 at 4817.159 kb on + strand, within HER17_RS21480 at 4817.289 kb on - strand at 4817.289 kb on - strand at 4817.295 kb on + strand at 4817.296 kb on - strand at 4817.296 kb on - strand at 4817.296 kb on - strand at 4817.306 kb on + strand at 4817.307 kb on - strand at 4817.307 kb on - strand at 4817.310 kb on + strand at 4817.328 kb on - strand at 4817.341 kb on - strand at 4817.350 kb on + strand at 4817.350 kb on + strand at 4817.351 kb on - strand at 4817.380 kb on + strand, within HER17_RS21485 at 4817.380 kb on + strand, within HER17_RS21485 at 4817.381 kb on - strand, within HER17_RS21485 at 4817.394 kb on + strand, within HER17_RS21485 at 4817.428 kb on + strand, within HER17_RS21485 at 4817.454 kb on + strand, within HER17_RS21485 at 4817.455 kb on - strand, within HER17_RS21485 at 4817.458 kb on + strand, within HER17_RS21485 at 4817.459 kb on - strand, within HER17_RS21485 at 4817.459 kb on - strand, within HER17_RS21485 at 4817.483 kb on + strand, within HER17_RS21485 at 4817.483 kb on + strand, within HER17_RS21485 at 4817.483 kb on + strand, within HER17_RS21485 at 4817.483 kb on + strand, within HER17_RS21485 at 4817.484 kb on - strand, within HER17_RS21485 at 4817.581 kb on + strand, within HER17_RS21485 at 4817.581 kb on + strand, within HER17_RS21485 at 4817.581 kb on + strand, within HER17_RS21485 at 4817.620 kb on + strand at 4817.674 kb on - strand at 4817.682 kb on + strand at 4817.683 kb on - strand at 4817.683 kb on - strand at 4817.683 kb on - strand at 4817.683 kb on - strand at 4817.684 kb on + strand at 4817.684 kb on + strand at 4817.684 kb on + strand at 4817.685 kb on - strand at 4817.685 kb on - strand at 4817.685 kb on - strand at 4817.685 kb on - strand at 4817.685 kb on - strand at 4817.685 kb on - strand at 4817.691 kb on - strand at 4817.753 kb on + strand at 4817.754 kb on - strand at 4817.760 kb on + strand at 4817.760 kb on + strand at 4817.760 kb on + strand at 4817.760 kb on + strand at 4817.760 kb on + strand at 4817.761 kb on - strand at 4817.764 kb on + strand at 4817.764 kb on + strand at 4817.764 kb on + strand at 4817.765 kb on - strand at 4817.765 kb on - strand at 4817.765 kb on - strand at 4817.765 kb on - strand at 4817.802 kb on + strand at 4817.802 kb on + strand at 4817.802 kb on + strand at 4817.802 kb on + strand at 4817.802 kb on + strand at 4817.803 kb on - strand at 4817.806 kb on + strand at 4817.807 kb on - strand at 4817.807 kb on - strand at 4817.807 kb on - strand at 4817.807 kb on - strand at 4817.807 kb on - strand at 4817.807 kb on - strand at 4817.807 kb on - strand at 4817.888 kb on + strand, within HER17_RS21490 at 4817.909 kb on + strand, within HER17_RS21490 at 4817.909 kb on + strand, within HER17_RS21490 at 4817.911 kb on + strand, within HER17_RS21490 at 4817.911 kb on + strand, within HER17_RS21490 at 4817.911 kb on + strand, within HER17_RS21490 at 4817.912 kb on - strand, within HER17_RS21490 at 4817.986 kb on + strand, within HER17_RS21490 at 4817.986 kb on + strand, within HER17_RS21490 at 4818.092 kb on + strand, within HER17_RS21490 at 4818.092 kb on + strand, within HER17_RS21490 at 4818.093 kb on - strand, within HER17_RS21490 at 4818.176 kb on - strand, within HER17_RS21490 at 4818.176 kb on - strand, within HER17_RS21490 at 4818.209 kb on + strand, within HER17_RS21490 at 4818.209 kb on + strand, within HER17_RS21490 at 4818.209 kb on + strand, within HER17_RS21490 at 4818.210 kb on - strand, within HER17_RS21490 at 4818.210 kb on - strand, within HER17_RS21490 at 4818.215 kb on + strand, within HER17_RS21490 at 4818.216 kb on - strand, within HER17_RS21490 at 4818.216 kb on - strand, within HER17_RS21490 at 4818.219 kb on + strand, within HER17_RS21490 at 4818.219 kb on + strand, within HER17_RS21490 at 4818.219 kb on + strand, within HER17_RS21490 at 4818.219 kb on + strand, within HER17_RS21490 at 4818.220 kb on - strand, within HER17_RS21490 at 4818.222 kb on + strand, within HER17_RS21490 at 4818.223 kb on - strand, within HER17_RS21490 at 4818.223 kb on - strand, within HER17_RS21490 at 4818.250 kb on + strand, within HER17_RS21490 at 4818.250 kb on + strand, within HER17_RS21490 at 4818.250 kb on + strand, within HER17_RS21490 at 4818.251 kb on - strand, within HER17_RS21490 at 4818.251 kb on - strand, within HER17_RS21490
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,815,293 - +1.2 4,815,293 - -0.3 4,815,328 - -2.3 4,815,420 - +0.0 4,815,423 - +0.4 4,815,463 + +0.0 4,815,535 + -0.3 4,815,554 - +0.5 4,815,554 - +0.3 4,815,555 + -0.7 4,815,555 + -0.4 4,815,556 - +0.1 4,815,556 - +0.4 4,815,585 + -0.1 4,815,586 - +0.2 4,815,587 + +0.2 4,815,587 + -0.0 4,815,587 + -0.1 4,815,587 + -0.0 4,815,588 - -0.6 4,815,623 + +0.0 4,815,623 + -0.3 4,815,672 - +0.0 4,815,720 + HER17_RS21475 0.15 -1.2 4,815,721 - HER17_RS21475 0.15 -0.0 4,815,721 - HER17_RS21475 0.15 +1.2 4,815,724 + HER17_RS21475 0.16 +0.7 4,815,756 - HER17_RS21475 0.21 +0.6 4,815,814 + HER17_RS21475 0.30 -1.1 4,815,815 - HER17_RS21475 0.30 +0.9 4,815,875 - HER17_RS21475 0.40 -1.1 4,816,107 + HER17_RS21475 0.77 -0.5 4,816,153 + HER17_RS21475 0.84 +0.6 4,816,153 + HER17_RS21475 0.84 -0.5 4,816,163 + HER17_RS21475 0.86 -0.6 4,816,163 + HER17_RS21475 0.86 +1.5 4,816,164 - HER17_RS21475 0.86 -0.0 4,816,167 + HER17_RS21475 0.87 -0.1 4,816,168 - HER17_RS21475 0.87 -0.1 4,816,204 + -1.1 4,816,205 - -0.4 4,816,289 + +0.2 4,816,295 + +0.7 4,816,296 - -0.5 4,816,296 - -0.1 4,816,330 + +0.0 4,816,330 + +0.4 4,816,331 - +0.1 4,816,334 + +0.1 4,816,432 - HER17_RS21480 0.16 -0.4 4,816,432 - HER17_RS21480 0.16 +0.2 4,816,435 - HER17_RS21480 0.16 -0.2 4,816,435 - HER17_RS21480 0.16 +0.6 4,816,506 + HER17_RS21480 0.24 -0.6 4,816,506 + HER17_RS21480 0.24 -0.9 4,816,506 + HER17_RS21480 0.24 +0.6 4,816,507 - HER17_RS21480 0.24 +1.4 4,816,515 - HER17_RS21480 0.24 -0.3 4,816,515 - HER17_RS21480 0.24 -0.1 4,816,534 + HER17_RS21480 0.26 -0.2 4,816,534 + HER17_RS21480 0.26 -0.2 4,816,534 + HER17_RS21480 0.26 +0.6 4,816,535 - HER17_RS21480 0.26 +0.9 4,816,535 - HER17_RS21480 0.26 +0.3 4,816,571 + HER17_RS21480 0.30 +0.5 4,816,572 - HER17_RS21480 0.30 -0.4 4,816,572 - HER17_RS21480 0.30 -0.9 4,816,581 - HER17_RS21480 0.31 +0.0 4,816,620 - HER17_RS21480 0.35 -0.4 4,816,642 + HER17_RS21480 0.37 -0.1 4,816,754 + HER17_RS21480 0.49 +0.3 4,816,754 + HER17_RS21480 0.49 -0.4 4,816,754 + HER17_RS21480 0.49 +0.0 4,816,755 - HER17_RS21480 0.49 -0.1 4,816,763 + HER17_RS21480 0.50 -0.5 4,816,763 + HER17_RS21480 0.50 -0.0 4,816,806 + HER17_RS21480 0.54 +0.1 4,816,895 + HER17_RS21480 0.63 -0.2 4,816,896 - HER17_RS21480 0.63 -0.1 4,816,896 - HER17_RS21480 0.63 +0.5 4,816,968 + HER17_RS21480 0.70 +0.3 4,816,968 + HER17_RS21480 0.70 +0.6 4,816,990 + HER17_RS21480 0.73 -0.0 4,817,012 - HER17_RS21480 0.75 +0.2 4,817,012 - HER17_RS21480 0.75 -0.1 4,817,047 + HER17_RS21480 0.78 -0.7 4,817,113 + HER17_RS21480 0.85 -0.9 4,817,137 - HER17_RS21480 0.87 +1.0 4,817,137 - HER17_RS21480 0.87 -0.4 4,817,151 + HER17_RS21480 0.89 -0.0 4,817,151 + HER17_RS21480 0.89 -0.4 4,817,159 + HER17_RS21480 0.90 +1.2 4,817,289 - -0.2 4,817,289 - +0.4 4,817,295 + -1.0 4,817,296 - -0.0 4,817,296 - -0.5 4,817,296 - -1.0 4,817,306 + -0.6 4,817,307 - +1.7 4,817,307 - +0.0 4,817,310 + +0.6 4,817,328 - +0.1 4,817,341 - +0.0 4,817,350 + +0.3 4,817,350 + -0.4 4,817,351 - +0.4 4,817,380 + HER17_RS21485 0.15 +0.2 4,817,380 + HER17_RS21485 0.15 -0.0 4,817,381 - HER17_RS21485 0.16 +0.2 4,817,394 + HER17_RS21485 0.20 -0.6 4,817,428 + HER17_RS21485 0.33 -0.0 4,817,454 + HER17_RS21485 0.43 -1.0 4,817,455 - HER17_RS21485 0.43 -0.9 4,817,458 + HER17_RS21485 0.44 -0.6 4,817,459 - HER17_RS21485 0.44 -0.6 4,817,459 - HER17_RS21485 0.44 -0.1 4,817,483 + HER17_RS21485 0.53 +0.6 4,817,483 + HER17_RS21485 0.53 +0.2 4,817,483 + HER17_RS21485 0.53 -0.6 4,817,483 + HER17_RS21485 0.53 -1.4 4,817,484 - HER17_RS21485 0.54 +0.6 4,817,581 + HER17_RS21485 0.90 +0.6 4,817,581 + HER17_RS21485 0.90 -0.3 4,817,581 + HER17_RS21485 0.90 -0.4 4,817,620 + -1.2 4,817,674 - +0.2 4,817,682 + +0.4 4,817,683 - -0.3 4,817,683 - +0.8 4,817,683 - -1.1 4,817,683 - +1.5 4,817,684 + -1.0 4,817,684 + -0.6 4,817,684 + -0.3 4,817,685 - +0.5 4,817,685 - -0.1 4,817,685 - +0.5 4,817,685 - -1.0 4,817,685 - -0.2 4,817,685 - -1.2 4,817,691 - -0.1 4,817,753 + -0.2 4,817,754 - +0.4 4,817,760 + -0.1 4,817,760 + +0.6 4,817,760 + +0.5 4,817,760 + -0.2 4,817,760 + +0.0 4,817,761 - +0.3 4,817,764 + -0.1 4,817,764 + -0.1 4,817,764 + +0.3 4,817,765 - -0.5 4,817,765 - -0.5 4,817,765 - +0.3 4,817,765 - +0.3 4,817,802 + +0.5 4,817,802 + +0.1 4,817,802 + -0.3 4,817,802 + -1.4 4,817,802 + +0.2 4,817,803 - -0.3 4,817,806 + +0.2 4,817,807 - -0.2 4,817,807 - -0.7 4,817,807 - +0.1 4,817,807 - -0.7 4,817,807 - +2.2 4,817,807 - +0.0 4,817,807 - +0.2 4,817,888 + HER17_RS21490 0.12 +0.3 4,817,909 + HER17_RS21490 0.15 -0.3 4,817,909 + HER17_RS21490 0.15 +1.1 4,817,911 + HER17_RS21490 0.16 +0.1 4,817,911 + HER17_RS21490 0.16 +0.0 4,817,911 + HER17_RS21490 0.16 -0.2 4,817,912 - HER17_RS21490 0.16 -0.3 4,817,986 + HER17_RS21490 0.28 +0.0 4,817,986 + HER17_RS21490 0.28 -0.5 4,818,092 + HER17_RS21490 0.47 +0.3 4,818,092 + HER17_RS21490 0.47 -0.4 4,818,093 - HER17_RS21490 0.47 -0.7 4,818,176 - HER17_RS21490 0.61 +0.5 4,818,176 - HER17_RS21490 0.61 -0.6 4,818,209 + HER17_RS21490 0.67 -0.1 4,818,209 + HER17_RS21490 0.67 -0.5 4,818,209 + HER17_RS21490 0.67 -1.0 4,818,210 - HER17_RS21490 0.67 +0.4 4,818,210 - HER17_RS21490 0.67 -0.1 4,818,215 + HER17_RS21490 0.68 +0.3 4,818,216 - HER17_RS21490 0.68 -0.1 4,818,216 - HER17_RS21490 0.68 -0.4 4,818,219 + HER17_RS21490 0.69 +0.5 4,818,219 + HER17_RS21490 0.69 -0.2 4,818,219 + HER17_RS21490 0.69 -0.5 4,818,219 + HER17_RS21490 0.69 -0.8 4,818,220 - HER17_RS21490 0.69 -0.4 4,818,222 + HER17_RS21490 0.69 +0.8 4,818,223 - HER17_RS21490 0.69 +0.1 4,818,223 - HER17_RS21490 0.69 -0.6 4,818,250 + HER17_RS21490 0.74 -0.7 4,818,250 + HER17_RS21490 0.74 -0.3 4,818,250 + HER17_RS21490 0.74 +0.8 4,818,251 - HER17_RS21490 0.74 +0.0 4,818,251 - HER17_RS21490 0.74 -0.3
Or see this region's nucleotide sequence