Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20735

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
4,647,169	+				+0.0
4,647,170	-				-0.7
4,647,170	-				-0.5
4,647,170	-				-0.1
4,647,170	-				-0.9
4,647,203	+				+0.3
4,647,204	-				+0.7
4,647,204	-				-0.7
4,647,204	-				+0.1
4,647,204	-				+1.1
4,647,208	-				+0.1
4,647,249	-				-1.4
4,647,249	-				-0.7
4,647,249	-				+0.2
4,647,297	+		HER17_RS20730	0.12	-0.1
4,647,297	+		HER17_RS20730	0.12	-0.4
4,647,298	-		HER17_RS20730	0.12	-2.2
4,647,298	-		HER17_RS20730	0.12	-0.3
4,647,678	+		HER17_RS20730	0.58	-0.3
4,647,731	+		HER17_RS20730	0.64	-0.3
4,647,732	-		HER17_RS20730	0.64	-0.0
4,647,871	-		HER17_RS20730	0.81	-0.6
4,647,884	+		HER17_RS20730	0.83	+0.7
4,647,885	-		HER17_RS20730	0.83	-0.9
4,647,885	-		HER17_RS20730	0.83	+0.4
4,647,901	+		HER17_RS20730	0.85	-0.1
4,647,901	+		HER17_RS20730	0.85	+0.2
4,648,030	-				-0.1
4,648,030	-				-0.1
4,648,042	-				-0.5
4,648,058	+				-1.5
4,648,058	+				+0.4
4,648,059	-				+0.8
4,648,059	-				-0.3
4,648,059	-				-0.9
4,648,059	-				-0.1
4,648,059	-				-0.1
4,648,059	-				-1.5
4,648,059	-				+0.4
4,648,060	+				+0.5
4,648,060	+				+0.2
4,648,061	-				-0.4
4,648,061	-				+0.3
4,648,061	-				+0.4
4,648,061	-				-0.3
4,648,102	-				+0.3
4,648,102	-				+0.6
4,648,103	+				-0.1
4,648,104	-				-0.2
4,648,104	-				+0.3
4,648,119	+				-0.1
4,648,119	+				-0.5
4,648,120	-				-0.8
4,648,120	-				+0.1
4,648,120	-				-0.1
4,648,122	+				-1.3
4,648,122	+				+1.0
4,648,122	+				-1.1
4,648,122	+				-0.2
4,648,122	+				-0.5
4,648,122	+				-0.2
4,648,122	+				-0.0
4,648,122	+				-0.8
4,648,122	+				+0.5
4,648,123	-				-3.0
4,648,123	-				-0.0
4,648,123	-				+1.5
4,648,123	-				-0.4
4,648,123	-				+0.7
4,648,123	-				+0.8
4,648,123	-				+0.1
4,648,123	-				-0.8
4,648,152	+				-0.6
4,648,153	-				+0.4
4,648,153	-				+0.1
4,648,153	-				+0.2
4,648,167	+				-1.1
4,648,205	+				-2.1
4,648,206	-				-1.5
4,648,206	-				-3.4
4,648,242	+				-1.3
4,648,242	+				-4.0
4,648,243	-				-0.0
4,648,243	-				-3.5
4,648,243	-				-2.3
4,648,243	-				-1.8
4,648,243	-				-2.7
4,648,299	-		HER17_RS20735	0.13	-2.4
4,648,475	-		HER17_RS20735	0.30	-0.8
4,648,540	+		HER17_RS20735	0.37	-2.8
4,648,647	+		HER17_RS20735	0.47	-3.4
4,648,775	+		HER17_RS20735	0.60	-5.0
4,648,793	-		HER17_RS20735	0.61	-3.1
4,648,998	-		HER17_RS20735	0.82	-2.1
4,649,292	+		HER17_RS20740	0.23	+0.4
4,649,331	-		HER17_RS20740	0.31	-1.0
4,649,489	+		HER17_RS20740	0.65	-1.3
4,649,489	+		HER17_RS20740	0.65	-2.2
4,649,489	+		HER17_RS20740	0.65	-2.5
4,649,490	-		HER17_RS20740	0.65	-0.8
4,649,490	-		HER17_RS20740	0.65	-1.8
4,649,490	-		HER17_RS20740	0.65	-0.9
4,649,606	+		HER17_RS20740	0.89	-1.3
4,649,606	+		HER17_RS20740	0.89	-1.7
4,649,610	+				-0.9
4,649,659	-				-1.5
4,649,659	-				-1.0
4,649,662	+				-2.8
4,649,662	+				-2.0
4,649,662	+				-0.5
4,649,663	-				-1.0
4,649,663	-				-0.8
4,649,666	-				-2.3
4,649,666	-				+1.0
4,649,666	-				-1.0
4,649,666	-				-1.7
4,649,677	-				-0.1
4,649,704	+				-1.7
4,649,704	+				-2.0
4,649,705	-				-1.2
4,649,705	-				-0.0
4,649,755	+				-3.0
4,649,774	-				+0.9
4,649,826	+				+0.2
4,649,826	+				+1.0
4,649,826	+				-0.5
4,649,826	+				+0.6
4,649,827	-				-0.2
4,649,827	-				+0.6
4,649,827	-				+0.0
4,649,827	-				+0.4
4,649,835	+				-1.7
4,649,835	+				-0.7
4,649,835	+				-0.8
4,649,835	+				-0.7
4,649,836	-				+0.1
4,649,836	-				+0.8
4,649,836	-				+0.3
4,649,861	+				-1.5
4,649,876	+				-1.3
4,649,936	-		HER17_RS20745	0.14	-1.0
4,650,030	+		HER17_RS20745	0.36	-0.0
4,650,030	+		HER17_RS20745	0.36	-0.9
4,650,031	-		HER17_RS20745	0.36	-0.1
4,650,049	+		HER17_RS20745	0.40	+0.1
4,650,049	+		HER17_RS20745	0.40	+0.0
4,650,049	+		HER17_RS20745	0.40	+0.5
4,650,049	+		HER17_RS20745	0.40	-0.4
4,650,049	+		HER17_RS20745	0.40	-0.4
4,650,049	+		HER17_RS20745	0.40	+0.5
4,650,050	-		HER17_RS20745	0.41	-0.4
4,650,100	-		HER17_RS20745	0.52	-0.2
4,650,157	-		HER17_RS20745	0.65	-0.3