Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS20015 and HER17_RS20020 are separated by 4 nucleotides HER17_RS20020 and HER17_RS20025 are separated by 7 nucleotides HER17_RS20025 and HER17_RS20030 are separated by 414 nucleotides
HER17_RS20015: HER17_RS20015 - outer membrane lipid asymmetry maintenance protein MlaD, at 4,494,852 to 4,495,418
_RS20015
HER17_RS20020: HER17_RS20020 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 4,495,423 to 4,496,205
_RS20020
HER17_RS20025: HER17_RS20025 - phospholipid ABC transporter ATP-binding protein MlaF, at 4,496,213 to 4,497,025
_RS20025
HER17_RS20030: HER17_RS20030 - calcium/sodium antiporter, at 4,497,440 to 4,498,405
_RS20030
Position (kb) 4496
4497
4498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4495.300 kb on + strand, within HER17_RS20015 at 4495.300 kb on + strand, within HER17_RS20015 at 4495.379 kb on + strand at 4495.379 kb on + strand at 4495.380 kb on - strand at 4495.380 kb on - strand at 4495.582 kb on + strand, within HER17_RS20020 at 4495.582 kb on + strand, within HER17_RS20020 at 4495.582 kb on + strand, within HER17_RS20020 at 4495.587 kb on + strand, within HER17_RS20020 at 4495.962 kb on + strand, within HER17_RS20020 at 4495.964 kb on + strand, within HER17_RS20020 at 4495.964 kb on + strand, within HER17_RS20020 at 4495.964 kb on + strand, within HER17_RS20020 at 4495.964 kb on + strand, within HER17_RS20020 at 4495.964 kb on + strand, within HER17_RS20020 at 4495.965 kb on - strand, within HER17_RS20020 at 4495.982 kb on + strand, within HER17_RS20020 at 4495.990 kb on + strand, within HER17_RS20020 at 4495.991 kb on - strand, within HER17_RS20020 at 4496.060 kb on + strand, within HER17_RS20020 at 4496.061 kb on - strand, within HER17_RS20020 at 4496.121 kb on + strand, within HER17_RS20020 at 4496.200 kb on + strand at 4496.200 kb on + strand at 4496.200 kb on + strand at 4496.201 kb on - strand at 4496.201 kb on - strand at 4496.229 kb on - strand at 4496.229 kb on - strand at 4496.242 kb on + strand at 4496.242 kb on + strand at 4496.242 kb on + strand at 4496.243 kb on - strand at 4496.243 kb on - strand at 4496.243 kb on - strand at 4496.243 kb on - strand at 4496.244 kb on + strand at 4496.287 kb on + strand at 4496.320 kb on + strand, within HER17_RS20025 at 4496.320 kb on + strand, within HER17_RS20025 at 4496.320 kb on + strand, within HER17_RS20025 at 4496.320 kb on + strand, within HER17_RS20025 at 4496.321 kb on - strand, within HER17_RS20025 at 4496.321 kb on - strand, within HER17_RS20025 at 4496.321 kb on - strand, within HER17_RS20025 at 4496.377 kb on + strand, within HER17_RS20025 at 4496.377 kb on + strand, within HER17_RS20025 at 4496.378 kb on - strand, within HER17_RS20025 at 4496.378 kb on - strand, within HER17_RS20025 at 4496.378 kb on - strand, within HER17_RS20025 at 4496.378 kb on - strand, within HER17_RS20025 at 4496.379 kb on + strand, within HER17_RS20025 at 4496.379 kb on + strand, within HER17_RS20025 at 4496.379 kb on + strand, within HER17_RS20025 at 4496.379 kb on + strand, within HER17_RS20025 at 4496.379 kb on + strand, within HER17_RS20025 at 4496.379 kb on + strand, within HER17_RS20025 at 4496.380 kb on - strand, within HER17_RS20025 at 4496.380 kb on - strand, within HER17_RS20025 at 4496.380 kb on - strand, within HER17_RS20025 at 4496.380 kb on - strand, within HER17_RS20025 at 4496.380 kb on - strand, within HER17_RS20025 at 4496.411 kb on + strand, within HER17_RS20025 at 4496.411 kb on + strand, within HER17_RS20025 at 4496.412 kb on - strand, within HER17_RS20025 at 4496.412 kb on - strand, within HER17_RS20025 at 4496.412 kb on - strand, within HER17_RS20025 at 4496.412 kb on - strand, within HER17_RS20025 at 4496.527 kb on + strand, within HER17_RS20025 at 4496.528 kb on - strand, within HER17_RS20025 at 4496.528 kb on - strand, within HER17_RS20025 at 4496.528 kb on - strand, within HER17_RS20025 at 4496.528 kb on - strand, within HER17_RS20025 at 4496.624 kb on + strand, within HER17_RS20025 at 4496.624 kb on + strand, within HER17_RS20025 at 4496.625 kb on - strand, within HER17_RS20025 at 4496.659 kb on + strand, within HER17_RS20025 at 4496.686 kb on + strand, within HER17_RS20025 at 4496.687 kb on - strand, within HER17_RS20025 at 4496.687 kb on - strand, within HER17_RS20025 at 4496.713 kb on + strand, within HER17_RS20025 at 4496.713 kb on + strand, within HER17_RS20025 at 4496.785 kb on - strand, within HER17_RS20025 at 4496.983 kb on + strand at 4496.984 kb on - strand at 4497.007 kb on + strand at 4497.007 kb on + strand at 4497.007 kb on + strand at 4497.008 kb on - strand at 4497.008 kb on - strand at 4497.008 kb on - strand at 4497.008 kb on - strand at 4497.026 kb on + strand at 4497.027 kb on - strand at 4497.027 kb on - strand at 4497.049 kb on + strand at 4497.049 kb on + strand at 4497.049 kb on + strand at 4497.050 kb on - strand at 4497.057 kb on + strand at 4497.058 kb on - strand at 4497.058 kb on - strand at 4497.058 kb on - strand at 4497.126 kb on + strand at 4497.169 kb on + strand at 4497.174 kb on - strand at 4497.216 kb on - strand at 4497.270 kb on + strand at 4497.271 kb on - strand at 4497.271 kb on - strand at 4497.292 kb on + strand at 4497.293 kb on - strand at 4497.294 kb on + strand at 4497.294 kb on + strand at 4497.295 kb on - strand at 4497.295 kb on - strand at 4497.295 kb on - strand at 4497.295 kb on - strand at 4497.295 kb on - strand at 4497.295 kb on - strand at 4497.295 kb on - strand at 4497.295 kb on - strand at 4497.299 kb on + strand at 4497.303 kb on + strand at 4497.350 kb on + strand at 4497.350 kb on + strand at 4497.350 kb on + strand at 4497.350 kb on + strand at 4497.351 kb on - strand at 4497.359 kb on - strand at 4497.359 kb on - strand at 4497.359 kb on - strand at 4497.359 kb on - strand at 4497.379 kb on + strand at 4497.382 kb on - strand at 4497.382 kb on - strand at 4497.406 kb on + strand at 4497.406 kb on + strand at 4497.407 kb on - strand at 4497.415 kb on + strand at 4497.415 kb on + strand at 4497.415 kb on + strand at 4497.415 kb on + strand at 4497.416 kb on - strand at 4497.416 kb on - strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.417 kb on + strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.418 kb on - strand at 4497.419 kb on + strand at 4497.419 kb on + strand at 4497.419 kb on + strand at 4497.419 kb on + strand at 4497.420 kb on - strand at 4497.420 kb on - strand at 4497.420 kb on - strand at 4497.420 kb on - strand at 4497.420 kb on - strand at 4497.424 kb on + strand at 4497.424 kb on + strand at 4497.428 kb on - strand at 4497.428 kb on - strand at 4497.456 kb on + strand at 4497.456 kb on + strand at 4497.456 kb on + strand at 4497.457 kb on - strand at 4497.457 kb on - strand at 4497.457 kb on - strand at 4497.457 kb on - strand at 4497.480 kb on + strand at 4497.488 kb on + strand at 4497.509 kb on + strand at 4497.510 kb on - strand at 4497.543 kb on + strand, within HER17_RS20030 at 4497.670 kb on + strand, within HER17_RS20030 at 4497.680 kb on - strand, within HER17_RS20030 at 4497.727 kb on - strand, within HER17_RS20030 at 4497.777 kb on + strand, within HER17_RS20030 at 4497.777 kb on + strand, within HER17_RS20030 at 4497.777 kb on + strand, within HER17_RS20030 at 4497.777 kb on + strand, within HER17_RS20030 at 4497.778 kb on - strand, within HER17_RS20030 at 4497.778 kb on - strand, within HER17_RS20030 at 4497.778 kb on - strand, within HER17_RS20030 at 4497.793 kb on - strand, within HER17_RS20030 at 4497.802 kb on + strand, within HER17_RS20030 at 4497.802 kb on + strand, within HER17_RS20030 at 4497.802 kb on + strand, within HER17_RS20030 at 4497.802 kb on + strand, within HER17_RS20030 at 4497.802 kb on + strand, within HER17_RS20030 at 4497.802 kb on + strand, within HER17_RS20030 at 4497.803 kb on - strand, within HER17_RS20030 at 4497.803 kb on - strand, within HER17_RS20030 at 4497.803 kb on - strand, within HER17_RS20030 at 4497.803 kb on - strand, within HER17_RS20030 at 4497.803 kb on - strand, within HER17_RS20030 at 4497.803 kb on - strand, within HER17_RS20030 at 4497.806 kb on + strand, within HER17_RS20030 at 4497.806 kb on + strand, within HER17_RS20030 at 4497.806 kb on + strand, within HER17_RS20030 at 4497.807 kb on - strand, within HER17_RS20030 at 4497.807 kb on - strand, within HER17_RS20030 at 4497.807 kb on - strand, within HER17_RS20030 at 4497.807 kb on - strand, within HER17_RS20030 at 4497.807 kb on - strand, within HER17_RS20030 at 4497.828 kb on + strand, within HER17_RS20030 at 4497.828 kb on + strand, within HER17_RS20030 at 4497.828 kb on + strand, within HER17_RS20030 at 4497.828 kb on + strand, within HER17_RS20030 at 4497.829 kb on - strand, within HER17_RS20030 at 4497.829 kb on - strand, within HER17_RS20030 at 4497.867 kb on + strand, within HER17_RS20030 at 4497.867 kb on + strand, within HER17_RS20030 at 4497.868 kb on - strand, within HER17_RS20030 at 4497.868 kb on - strand, within HER17_RS20030 at 4497.868 kb on - strand, within HER17_RS20030 at 4497.868 kb on - strand, within HER17_RS20030 at 4497.928 kb on - strand, within HER17_RS20030 at 4497.952 kb on + strand, within HER17_RS20030 at 4497.994 kb on + strand, within HER17_RS20030 at 4497.995 kb on - strand, within HER17_RS20030 at 4498.015 kb on + strand, within HER17_RS20030 at 4498.016 kb on - strand, within HER17_RS20030
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,495,300 + HER17_RS20015 0.79 -0.2 4,495,300 + HER17_RS20015 0.79 +0.4 4,495,379 + -0.4 4,495,379 + -1.1 4,495,380 - -0.4 4,495,380 - +0.4 4,495,582 + HER17_RS20020 0.20 -0.0 4,495,582 + HER17_RS20020 0.20 +1.4 4,495,582 + HER17_RS20020 0.20 +0.0 4,495,587 + HER17_RS20020 0.21 -0.3 4,495,962 + HER17_RS20020 0.69 -0.1 4,495,964 + HER17_RS20020 0.69 -0.1 4,495,964 + HER17_RS20020 0.69 -0.2 4,495,964 + HER17_RS20020 0.69 +0.1 4,495,964 + HER17_RS20020 0.69 +0.5 4,495,964 + HER17_RS20020 0.69 +0.1 4,495,965 - HER17_RS20020 0.69 -1.5 4,495,982 + HER17_RS20020 0.71 -0.8 4,495,990 + HER17_RS20020 0.72 +0.6 4,495,991 - HER17_RS20020 0.73 -0.9 4,496,060 + HER17_RS20020 0.81 +0.1 4,496,061 - HER17_RS20020 0.81 -1.2 4,496,121 + HER17_RS20020 0.89 +0.0 4,496,200 + +0.3 4,496,200 + -0.2 4,496,200 + +0.0 4,496,201 - -1.5 4,496,201 - -0.9 4,496,229 - -0.0 4,496,229 - -0.1 4,496,242 + -1.6 4,496,242 + +0.5 4,496,242 + +0.1 4,496,243 - -1.8 4,496,243 - -1.7 4,496,243 - -3.4 4,496,243 - -2.5 4,496,244 + +0.4 4,496,287 + +0.6 4,496,320 + HER17_RS20025 0.13 -0.0 4,496,320 + HER17_RS20025 0.13 +0.3 4,496,320 + HER17_RS20025 0.13 +0.9 4,496,320 + HER17_RS20025 0.13 +0.0 4,496,321 - HER17_RS20025 0.13 -3.3 4,496,321 - HER17_RS20025 0.13 +0.0 4,496,321 - HER17_RS20025 0.13 -1.2 4,496,377 + HER17_RS20025 0.20 +0.6 4,496,377 + HER17_RS20025 0.20 -0.0 4,496,378 - HER17_RS20025 0.20 -0.9 4,496,378 - HER17_RS20025 0.20 +0.3 4,496,378 - HER17_RS20025 0.20 -1.7 4,496,378 - HER17_RS20025 0.20 -0.7 4,496,379 + HER17_RS20025 0.20 +0.8 4,496,379 + HER17_RS20025 0.20 +0.2 4,496,379 + HER17_RS20025 0.20 +0.2 4,496,379 + HER17_RS20025 0.20 +0.6 4,496,379 + HER17_RS20025 0.20 +0.2 4,496,379 + HER17_RS20025 0.20 +0.2 4,496,380 - HER17_RS20025 0.21 -0.3 4,496,380 - HER17_RS20025 0.21 -0.8 4,496,380 - HER17_RS20025 0.21 -1.3 4,496,380 - HER17_RS20025 0.21 -1.8 4,496,380 - HER17_RS20025 0.21 -1.4 4,496,411 + HER17_RS20025 0.24 -0.0 4,496,411 + HER17_RS20025 0.24 +0.4 4,496,412 - HER17_RS20025 0.24 -0.8 4,496,412 - HER17_RS20025 0.24 -1.2 4,496,412 - HER17_RS20025 0.24 +0.0 4,496,412 - HER17_RS20025 0.24 -1.7 4,496,527 + HER17_RS20025 0.39 +0.7 4,496,528 - HER17_RS20025 0.39 -0.7 4,496,528 - HER17_RS20025 0.39 -0.6 4,496,528 - HER17_RS20025 0.39 -0.1 4,496,528 - HER17_RS20025 0.39 +0.8 4,496,624 + HER17_RS20025 0.51 +0.4 4,496,624 + HER17_RS20025 0.51 +0.4 4,496,625 - HER17_RS20025 0.51 -0.1 4,496,659 + HER17_RS20025 0.55 +0.3 4,496,686 + HER17_RS20025 0.58 -0.4 4,496,687 - HER17_RS20025 0.58 -1.2 4,496,687 - HER17_RS20025 0.58 +0.4 4,496,713 + HER17_RS20025 0.62 -0.3 4,496,713 + HER17_RS20025 0.62 +0.4 4,496,785 - HER17_RS20025 0.70 -1.0 4,496,983 + +0.4 4,496,984 - -0.8 4,497,007 + +0.6 4,497,007 + +0.3 4,497,007 + +0.4 4,497,008 - -0.9 4,497,008 - -1.7 4,497,008 - +0.2 4,497,008 - +0.2 4,497,026 + +0.6 4,497,027 - -1.0 4,497,027 - -3.6 4,497,049 + -0.2 4,497,049 + -0.1 4,497,049 + +2.0 4,497,050 - -0.3 4,497,057 + -1.3 4,497,058 - -0.2 4,497,058 - +0.3 4,497,058 - -0.3 4,497,126 + -0.2 4,497,169 + -0.3 4,497,174 - -1.2 4,497,216 - -0.3 4,497,270 + +0.0 4,497,271 - -0.4 4,497,271 - +0.6 4,497,292 + -0.6 4,497,293 - +0.3 4,497,294 + +0.3 4,497,294 + +0.2 4,497,295 - +0.2 4,497,295 - -0.3 4,497,295 - -0.1 4,497,295 - -0.1 4,497,295 - -0.5 4,497,295 - +0.2 4,497,295 - +0.0 4,497,295 - -0.7 4,497,299 + -0.7 4,497,303 + -0.8 4,497,350 + -0.8 4,497,350 + +0.0 4,497,350 + +0.1 4,497,350 + +0.7 4,497,351 - +0.4 4,497,359 - -0.1 4,497,359 - +0.2 4,497,359 - +0.4 4,497,359 - +0.6 4,497,379 + -0.6 4,497,382 - -0.0 4,497,382 - -0.2 4,497,406 + -0.2 4,497,406 + +0.3 4,497,407 - +0.5 4,497,415 + -0.7 4,497,415 + -0.1 4,497,415 + +0.5 4,497,415 + +0.7 4,497,416 - -1.9 4,497,416 - +0.9 4,497,417 + +0.8 4,497,417 + +0.2 4,497,417 + +0.1 4,497,417 + -0.6 4,497,417 + -0.3 4,497,417 + +0.2 4,497,417 + +0.8 4,497,417 + +0.0 4,497,417 + +0.0 4,497,417 + -0.1 4,497,417 + +0.9 4,497,418 - +0.2 4,497,418 - -0.6 4,497,418 - -2.1 4,497,418 - -0.1 4,497,418 - -0.3 4,497,418 - -0.1 4,497,418 - -0.6 4,497,418 - +0.1 4,497,418 - +0.2 4,497,418 - -0.9 4,497,418 - +0.7 4,497,418 - +0.5 4,497,419 + -0.0 4,497,419 + +0.3 4,497,419 + -0.4 4,497,419 + +0.9 4,497,420 - -0.2 4,497,420 - -0.5 4,497,420 - -0.1 4,497,420 - +0.8 4,497,420 - +0.1 4,497,424 + -0.8 4,497,424 + -0.4 4,497,428 - +0.6 4,497,428 - +1.0 4,497,456 + -0.1 4,497,456 + -0.1 4,497,456 + +0.1 4,497,457 - -1.6 4,497,457 - -0.0 4,497,457 - +0.4 4,497,457 - +0.8 4,497,480 + +0.5 4,497,488 + +0.4 4,497,509 + -0.4 4,497,510 - +0.2 4,497,543 + HER17_RS20030 0.11 +1.1 4,497,670 + HER17_RS20030 0.24 -0.3 4,497,680 - HER17_RS20030 0.25 +0.6 4,497,727 - HER17_RS20030 0.30 +0.0 4,497,777 + HER17_RS20030 0.35 -0.1 4,497,777 + HER17_RS20030 0.35 -0.2 4,497,777 + HER17_RS20030 0.35 -0.1 4,497,777 + HER17_RS20030 0.35 -2.0 4,497,778 - HER17_RS20030 0.35 -0.2 4,497,778 - HER17_RS20030 0.35 -0.3 4,497,778 - HER17_RS20030 0.35 +0.1 4,497,793 - HER17_RS20030 0.37 -0.2 4,497,802 + HER17_RS20030 0.37 -1.0 4,497,802 + HER17_RS20030 0.37 +0.3 4,497,802 + HER17_RS20030 0.37 +0.5 4,497,802 + HER17_RS20030 0.37 -1.1 4,497,802 + HER17_RS20030 0.37 -1.0 4,497,802 + HER17_RS20030 0.37 +0.4 4,497,803 - HER17_RS20030 0.38 +0.7 4,497,803 - HER17_RS20030 0.38 -0.6 4,497,803 - HER17_RS20030 0.38 +0.6 4,497,803 - HER17_RS20030 0.38 -0.2 4,497,803 - HER17_RS20030 0.38 +0.2 4,497,803 - HER17_RS20030 0.38 -1.0 4,497,806 + HER17_RS20030 0.38 +1.0 4,497,806 + HER17_RS20030 0.38 +0.5 4,497,806 + HER17_RS20030 0.38 -0.7 4,497,807 - HER17_RS20030 0.38 +0.2 4,497,807 - HER17_RS20030 0.38 -3.3 4,497,807 - HER17_RS20030 0.38 -0.8 4,497,807 - HER17_RS20030 0.38 +0.5 4,497,807 - HER17_RS20030 0.38 +0.3 4,497,828 + HER17_RS20030 0.40 -0.1 4,497,828 + HER17_RS20030 0.40 -0.6 4,497,828 + HER17_RS20030 0.40 -0.2 4,497,828 + HER17_RS20030 0.40 -0.6 4,497,829 - HER17_RS20030 0.40 -1.4 4,497,829 - HER17_RS20030 0.40 +0.6 4,497,867 + HER17_RS20030 0.44 +0.3 4,497,867 + HER17_RS20030 0.44 +1.4 4,497,868 - HER17_RS20030 0.44 +1.0 4,497,868 - HER17_RS20030 0.44 -0.1 4,497,868 - HER17_RS20030 0.44 -0.2 4,497,868 - HER17_RS20030 0.44 -0.1 4,497,928 - HER17_RS20030 0.51 +0.4 4,497,952 + HER17_RS20030 0.53 +0.5 4,497,994 + HER17_RS20030 0.57 -0.8 4,497,995 - HER17_RS20030 0.57 -1.0 4,498,015 + HER17_RS20030 0.60 +0.1 4,498,016 - HER17_RS20030 0.60 +1.3
Or see this region's nucleotide sequence