Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS18660 and HER17_RS18665 are separated by 356 nucleotides HER17_RS18665 and HER17_RS18670 are separated by 243 nucleotides HER17_RS18670 and HER17_RS18675 are separated by 215 nucleotides
HER17_RS18660: HER17_RS18660 - diguanylate cyclase, at 4,192,659 to 4,193,981
_RS18660
HER17_RS18665: HER17_RS18665 - ATP-independent periplasmic protein-refolding chaperone Spy, at 4,194,338 to 4,194,826
_RS18665
HER17_RS18670: HER17_RS18670 - hypothetical protein, at 4,195,070 to 4,195,366
_RS18670
HER17_RS18675: HER17_RS18675 - NADPH-dependent 2,4-dienoyl-CoA reductase, at 4,195,582 to 4,197,636
_RS18675
Position (kb) 4194
4195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4193.341 kb on + strand, within HER17_RS18660 at 4193.353 kb on - strand, within HER17_RS18660 at 4193.353 kb on - strand, within HER17_RS18660 at 4193.395 kb on + strand, within HER17_RS18660 at 4193.395 kb on + strand, within HER17_RS18660 at 4193.396 kb on - strand, within HER17_RS18660 at 4193.435 kb on + strand, within HER17_RS18660 at 4193.436 kb on - strand, within HER17_RS18660 at 4193.436 kb on - strand, within HER17_RS18660 at 4193.465 kb on + strand, within HER17_RS18660 at 4193.466 kb on - strand, within HER17_RS18660 at 4193.470 kb on - strand, within HER17_RS18660 at 4193.470 kb on - strand, within HER17_RS18660 at 4193.470 kb on - strand, within HER17_RS18660 at 4193.470 kb on - strand, within HER17_RS18660 at 4193.470 kb on - strand, within HER17_RS18660 at 4193.592 kb on - strand, within HER17_RS18660 at 4193.592 kb on - strand, within HER17_RS18660 at 4193.627 kb on + strand, within HER17_RS18660 at 4193.627 kb on + strand, within HER17_RS18660 at 4193.656 kb on + strand, within HER17_RS18660 at 4193.657 kb on - strand, within HER17_RS18660 at 4193.657 kb on - strand, within HER17_RS18660 at 4193.662 kb on + strand, within HER17_RS18660 at 4193.662 kb on + strand, within HER17_RS18660 at 4193.662 kb on + strand, within HER17_RS18660 at 4193.662 kb on + strand, within HER17_RS18660 at 4193.662 kb on + strand, within HER17_RS18660 at 4193.662 kb on + strand, within HER17_RS18660 at 4193.662 kb on + strand, within HER17_RS18660 at 4193.662 kb on + strand, within HER17_RS18660 at 4193.663 kb on - strand, within HER17_RS18660 at 4193.663 kb on - strand, within HER17_RS18660 at 4193.663 kb on - strand, within HER17_RS18660 at 4193.663 kb on - strand, within HER17_RS18660 at 4193.663 kb on - strand, within HER17_RS18660 at 4193.663 kb on - strand, within HER17_RS18660 at 4193.669 kb on - strand, within HER17_RS18660 at 4193.669 kb on - strand, within HER17_RS18660 at 4193.723 kb on + strand, within HER17_RS18660 at 4193.726 kb on + strand, within HER17_RS18660 at 4193.726 kb on + strand, within HER17_RS18660 at 4193.726 kb on + strand, within HER17_RS18660 at 4193.727 kb on - strand, within HER17_RS18660 at 4193.727 kb on - strand, within HER17_RS18660 at 4193.727 kb on - strand, within HER17_RS18660 at 4193.727 kb on - strand, within HER17_RS18660 at 4193.728 kb on + strand, within HER17_RS18660 at 4193.728 kb on + strand, within HER17_RS18660 at 4193.728 kb on + strand, within HER17_RS18660 at 4193.729 kb on - strand, within HER17_RS18660 at 4193.729 kb on - strand, within HER17_RS18660 at 4193.729 kb on - strand, within HER17_RS18660 at 4193.734 kb on + strand, within HER17_RS18660 at 4193.735 kb on - strand, within HER17_RS18660 at 4193.737 kb on + strand, within HER17_RS18660 at 4193.738 kb on - strand, within HER17_RS18660 at 4193.823 kb on + strand, within HER17_RS18660 at 4193.823 kb on + strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.824 kb on - strand, within HER17_RS18660 at 4193.825 kb on + strand, within HER17_RS18660 at 4193.826 kb on - strand, within HER17_RS18660 at 4193.826 kb on - strand, within HER17_RS18660 at 4193.838 kb on + strand, within HER17_RS18660 at 4193.839 kb on - strand, within HER17_RS18660 at 4193.839 kb on - strand, within HER17_RS18660 at 4193.839 kb on - strand, within HER17_RS18660 at 4193.867 kb on + strand at 4193.867 kb on + strand at 4193.867 kb on + strand at 4193.867 kb on + strand at 4193.868 kb on - strand at 4193.868 kb on - strand at 4193.868 kb on - strand at 4193.868 kb on - strand at 4193.868 kb on - strand at 4193.905 kb on + strand at 4193.905 kb on + strand at 4193.905 kb on + strand at 4193.930 kb on + strand at 4193.930 kb on + strand at 4193.931 kb on - strand at 4193.931 kb on - strand at 4193.949 kb on + strand at 4193.949 kb on + strand at 4193.950 kb on - strand at 4193.975 kb on + strand at 4194.021 kb on + strand at 4194.022 kb on - strand at 4194.030 kb on + strand at 4194.030 kb on + strand at 4194.030 kb on + strand at 4194.031 kb on - strand at 4194.064 kb on - strand at 4194.064 kb on - strand at 4194.230 kb on - strand at 4194.269 kb on + strand at 4194.269 kb on + strand at 4194.269 kb on + strand at 4194.269 kb on + strand at 4194.270 kb on - strand at 4194.270 kb on - strand at 4194.270 kb on - strand at 4194.270 kb on - strand at 4194.272 kb on + strand at 4194.272 kb on + strand at 4194.272 kb on + strand at 4194.272 kb on + strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.273 kb on - strand at 4194.291 kb on - strand at 4194.303 kb on - strand at 4194.307 kb on + strand at 4194.307 kb on + strand at 4194.307 kb on + strand at 4194.307 kb on + strand at 4194.307 kb on + strand at 4194.308 kb on - strand at 4194.312 kb on - strand at 4194.331 kb on + strand at 4194.331 kb on + strand at 4194.332 kb on - strand at 4194.332 kb on - strand at 4194.339 kb on + strand at 4194.339 kb on + strand at 4194.409 kb on - strand, within HER17_RS18665 at 4194.409 kb on - strand, within HER17_RS18665 at 4194.442 kb on - strand, within HER17_RS18665 at 4194.556 kb on + strand, within HER17_RS18665 at 4194.556 kb on + strand, within HER17_RS18665 at 4194.557 kb on - strand, within HER17_RS18665 at 4194.757 kb on + strand, within HER17_RS18665 at 4194.758 kb on - strand, within HER17_RS18665 at 4194.758 kb on - strand, within HER17_RS18665 at 4194.789 kb on - strand at 4194.789 kb on - strand at 4194.789 kb on - strand at 4194.814 kb on + strand at 4194.815 kb on - strand at 4194.826 kb on + strand at 4194.826 kb on + strand at 4194.827 kb on - strand at 4194.827 kb on - strand at 4194.831 kb on + strand at 4194.831 kb on + strand at 4194.831 kb on + strand at 4194.832 kb on - strand at 4194.874 kb on + strand at 4194.887 kb on - strand at 4194.887 kb on - strand at 4194.888 kb on + strand at 4194.889 kb on - strand at 4194.912 kb on - strand at 4194.912 kb on - strand at 4194.922 kb on + strand at 4194.923 kb on - strand at 4194.960 kb on + strand at 4195.002 kb on - strand at 4195.002 kb on - strand at 4195.015 kb on - strand at 4195.015 kb on - strand at 4195.030 kb on + strand at 4195.030 kb on + strand at 4195.031 kb on - strand at 4195.035 kb on + strand at 4195.036 kb on - strand at 4195.036 kb on - strand at 4195.051 kb on + strand at 4195.054 kb on + strand at 4195.054 kb on + strand at 4195.055 kb on - strand at 4195.055 kb on - strand at 4195.055 kb on - strand at 4195.057 kb on + strand at 4195.068 kb on + strand at 4195.069 kb on - strand at 4195.174 kb on + strand, within HER17_RS18670 at 4195.174 kb on + strand, within HER17_RS18670 at 4195.175 kb on - strand, within HER17_RS18670 at 4195.225 kb on - strand, within HER17_RS18670 at 4195.225 kb on - strand, within HER17_RS18670 at 4195.225 kb on - strand, within HER17_RS18670 at 4195.250 kb on + strand, within HER17_RS18670 at 4195.251 kb on - strand, within HER17_RS18670 at 4195.251 kb on - strand, within HER17_RS18670 at 4195.251 kb on - strand, within HER17_RS18670 at 4195.251 kb on - strand, within HER17_RS18670 at 4195.372 kb on + strand at 4195.398 kb on + strand at 4195.400 kb on + strand at 4195.401 kb on - strand at 4195.401 kb on - strand at 4195.401 kb on - strand at 4195.472 kb on + strand at 4195.503 kb on + strand at 4195.503 kb on + strand at 4195.526 kb on - strand at 4195.532 kb on - strand at 4195.546 kb on - strand at 4195.634 kb on + strand at 4195.752 kb on + strand at 4195.753 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,193,341 + HER17_RS18660 0.52 -0.6 4,193,353 - HER17_RS18660 0.52 -0.3 4,193,353 - HER17_RS18660 0.52 -0.9 4,193,395 + HER17_RS18660 0.56 +0.5 4,193,395 + HER17_RS18660 0.56 +0.0 4,193,396 - HER17_RS18660 0.56 -0.7 4,193,435 + HER17_RS18660 0.59 +0.0 4,193,436 - HER17_RS18660 0.59 -0.9 4,193,436 - HER17_RS18660 0.59 +0.2 4,193,465 + HER17_RS18660 0.61 -0.5 4,193,466 - HER17_RS18660 0.61 -0.0 4,193,470 - HER17_RS18660 0.61 -0.8 4,193,470 - HER17_RS18660 0.61 +0.3 4,193,470 - HER17_RS18660 0.61 +0.3 4,193,470 - HER17_RS18660 0.61 -0.9 4,193,470 - HER17_RS18660 0.61 -0.6 4,193,592 - HER17_RS18660 0.71 -0.1 4,193,592 - HER17_RS18660 0.71 -0.1 4,193,627 + HER17_RS18660 0.73 -1.0 4,193,627 + HER17_RS18660 0.73 +0.0 4,193,656 + HER17_RS18660 0.75 -0.1 4,193,657 - HER17_RS18660 0.75 -0.4 4,193,657 - HER17_RS18660 0.75 -0.0 4,193,662 + HER17_RS18660 0.76 +0.1 4,193,662 + HER17_RS18660 0.76 -0.2 4,193,662 + HER17_RS18660 0.76 +0.1 4,193,662 + HER17_RS18660 0.76 +0.5 4,193,662 + HER17_RS18660 0.76 -1.0 4,193,662 + HER17_RS18660 0.76 +1.0 4,193,662 + HER17_RS18660 0.76 -0.1 4,193,662 + HER17_RS18660 0.76 +0.0 4,193,663 - HER17_RS18660 0.76 +0.2 4,193,663 - HER17_RS18660 0.76 +0.5 4,193,663 - HER17_RS18660 0.76 +0.3 4,193,663 - HER17_RS18660 0.76 +0.5 4,193,663 - HER17_RS18660 0.76 -0.0 4,193,663 - HER17_RS18660 0.76 +0.2 4,193,669 - HER17_RS18660 0.76 -1.3 4,193,669 - HER17_RS18660 0.76 -0.3 4,193,723 + HER17_RS18660 0.80 +1.4 4,193,726 + HER17_RS18660 0.81 -0.8 4,193,726 + HER17_RS18660 0.81 -0.7 4,193,726 + HER17_RS18660 0.81 -0.5 4,193,727 - HER17_RS18660 0.81 +0.4 4,193,727 - HER17_RS18660 0.81 -0.5 4,193,727 - HER17_RS18660 0.81 -0.1 4,193,727 - HER17_RS18660 0.81 +0.2 4,193,728 + HER17_RS18660 0.81 +0.3 4,193,728 + HER17_RS18660 0.81 +0.8 4,193,728 + HER17_RS18660 0.81 +0.5 4,193,729 - HER17_RS18660 0.81 +0.3 4,193,729 - HER17_RS18660 0.81 +0.7 4,193,729 - HER17_RS18660 0.81 +0.0 4,193,734 + HER17_RS18660 0.81 -0.1 4,193,735 - HER17_RS18660 0.81 -0.1 4,193,737 + HER17_RS18660 0.81 -0.2 4,193,738 - HER17_RS18660 0.82 +0.5 4,193,823 + HER17_RS18660 0.88 +0.6 4,193,823 + HER17_RS18660 0.88 +0.6 4,193,824 - HER17_RS18660 0.88 -0.1 4,193,824 - HER17_RS18660 0.88 +0.6 4,193,824 - HER17_RS18660 0.88 +0.6 4,193,824 - HER17_RS18660 0.88 -0.2 4,193,824 - HER17_RS18660 0.88 +0.1 4,193,824 - HER17_RS18660 0.88 +0.8 4,193,824 - HER17_RS18660 0.88 -0.1 4,193,824 - HER17_RS18660 0.88 -3.6 4,193,824 - HER17_RS18660 0.88 +0.5 4,193,824 - HER17_RS18660 0.88 +0.1 4,193,825 + HER17_RS18660 0.88 +0.1 4,193,826 - HER17_RS18660 0.88 +0.2 4,193,826 - HER17_RS18660 0.88 -0.4 4,193,838 + HER17_RS18660 0.89 -0.6 4,193,839 - HER17_RS18660 0.89 +1.0 4,193,839 - HER17_RS18660 0.89 +2.2 4,193,839 - HER17_RS18660 0.89 -0.1 4,193,867 + +0.2 4,193,867 + +0.7 4,193,867 + -0.8 4,193,867 + +0.5 4,193,868 - +0.0 4,193,868 - -0.2 4,193,868 - -0.4 4,193,868 - -1.1 4,193,868 - +1.8 4,193,905 + +0.3 4,193,905 + -0.5 4,193,905 + -0.5 4,193,930 + -0.0 4,193,930 + -1.2 4,193,931 - +0.1 4,193,931 - +0.3 4,193,949 + -0.6 4,193,949 + +0.5 4,193,950 - +0.7 4,193,975 + +1.1 4,194,021 + +1.0 4,194,022 - +0.6 4,194,030 + -0.4 4,194,030 + +0.3 4,194,030 + -0.3 4,194,031 - +1.3 4,194,064 - +0.0 4,194,064 - +0.6 4,194,230 - +0.7 4,194,269 + +0.1 4,194,269 + +0.9 4,194,269 + +0.1 4,194,269 + -0.8 4,194,270 - -0.3 4,194,270 - -0.1 4,194,270 - +0.0 4,194,270 - -0.2 4,194,272 + -0.1 4,194,272 + -1.5 4,194,272 + +0.2 4,194,272 + +0.0 4,194,273 - -0.1 4,194,273 - +1.0 4,194,273 - -0.5 4,194,273 - +0.2 4,194,273 - -0.2 4,194,273 - +0.4 4,194,273 - +0.8 4,194,273 - +0.1 4,194,273 - +0.3 4,194,273 - +0.2 4,194,291 - -0.4 4,194,303 - -0.5 4,194,307 + -0.7 4,194,307 + +0.3 4,194,307 + +1.0 4,194,307 + +0.5 4,194,307 + -1.2 4,194,308 - +1.2 4,194,312 - -0.5 4,194,331 + -0.1 4,194,331 + +0.9 4,194,332 - +0.2 4,194,332 - +0.1 4,194,339 + -0.4 4,194,339 + -0.1 4,194,409 - HER17_RS18665 0.15 -0.0 4,194,409 - HER17_RS18665 0.15 -0.4 4,194,442 - HER17_RS18665 0.21 -0.3 4,194,556 + HER17_RS18665 0.45 -0.4 4,194,556 + HER17_RS18665 0.45 -0.0 4,194,557 - HER17_RS18665 0.45 -0.0 4,194,757 + HER17_RS18665 0.86 +0.6 4,194,758 - HER17_RS18665 0.86 +0.5 4,194,758 - HER17_RS18665 0.86 +0.2 4,194,789 - -1.0 4,194,789 - +0.5 4,194,789 - +0.1 4,194,814 + -0.8 4,194,815 - +1.4 4,194,826 + -0.2 4,194,826 + -0.5 4,194,827 - -0.3 4,194,827 - -0.1 4,194,831 + -0.2 4,194,831 + +0.1 4,194,831 + -0.4 4,194,832 - +1.1 4,194,874 + -0.5 4,194,887 - +0.1 4,194,887 - -0.3 4,194,888 + -0.4 4,194,889 - -0.5 4,194,912 - -0.2 4,194,912 - +1.1 4,194,922 + -0.1 4,194,923 - +0.4 4,194,960 + +0.5 4,195,002 - +0.2 4,195,002 - +0.1 4,195,015 - -0.1 4,195,015 - -0.1 4,195,030 + +0.0 4,195,030 + -0.5 4,195,031 - -0.3 4,195,035 + +0.5 4,195,036 - -2.3 4,195,036 - +0.5 4,195,051 + +0.0 4,195,054 + +0.1 4,195,054 + -0.4 4,195,055 - -0.1 4,195,055 - +0.5 4,195,055 - +0.0 4,195,057 + -0.0 4,195,068 + +0.3 4,195,069 - +0.3 4,195,174 + HER17_RS18670 0.35 +0.5 4,195,174 + HER17_RS18670 0.35 +0.4 4,195,175 - HER17_RS18670 0.35 -1.0 4,195,225 - HER17_RS18670 0.52 +0.2 4,195,225 - HER17_RS18670 0.52 +0.5 4,195,225 - HER17_RS18670 0.52 +0.1 4,195,250 + HER17_RS18670 0.61 +0.5 4,195,251 - HER17_RS18670 0.61 -0.1 4,195,251 - HER17_RS18670 0.61 +1.1 4,195,251 - HER17_RS18670 0.61 +0.2 4,195,251 - HER17_RS18670 0.61 +0.5 4,195,372 + +0.2 4,195,398 + -0.1 4,195,400 + -0.3 4,195,401 - -0.9 4,195,401 - +0.6 4,195,401 - -0.5 4,195,472 + +0.2 4,195,503 + +0.2 4,195,503 + +0.4 4,195,526 - +0.2 4,195,532 - -0.8 4,195,546 - -0.0 4,195,634 + +0.1 4,195,752 + -0.0 4,195,753 - +0.3
Or see this region's nucleotide sequence