Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16980

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,819,251	+				+0.6
3,819,261	+				-0.4
3,819,261	+				-0.6
3,819,262	-				+0.2
3,819,262	-				+0.4
3,819,262	-				-0.3
3,819,262	-				-0.3
3,819,287	-				+0.4
3,819,307	-				-1.0
3,819,427	+				-0.6
3,819,491	-				-0.7
3,819,500	+				-0.1
3,819,501	-				-0.2
3,819,522	-				-0.3
3,819,543	+				+0.9
3,819,544	-				-0.2
3,819,544	-				-0.1
3,819,574	+				+0.1
3,819,574	+				-0.7
3,819,575	-				-0.5
3,819,594	+				+0.4
3,819,594	+				+1.2
3,819,594	+				-0.2
3,819,595	-				-0.8
3,819,648	+		HER17_RS16975	0.15	-0.6
3,819,652	+		HER17_RS16975	0.16	-1.5
3,819,653	-		HER17_RS16975	0.16	-1.2
3,819,775	-		HER17_RS16975	0.33	+0.4
3,819,789	+		HER17_RS16975	0.36	+0.3
3,819,790	-		HER17_RS16975	0.36	+0.0
3,819,882	+		HER17_RS16975	0.49	+0.7
3,819,952	-		HER17_RS16975	0.59	+1.4
3,819,975	-		HER17_RS16975	0.62	-0.2
3,819,978	-		HER17_RS16975	0.63	+0.1
3,820,028	+		HER17_RS16975	0.70	+0.1
3,820,028	+		HER17_RS16975	0.70	+0.4
3,820,028	+		HER17_RS16975	0.70	-0.0
3,820,037	+		HER17_RS16975	0.71	+0.1
3,820,097	+		HER17_RS16975	0.80	+0.2
3,820,098	-		HER17_RS16975	0.80	-0.6
3,820,098	-		HER17_RS16975	0.80	-0.0
3,820,111	+		HER17_RS16975	0.82	+0.1
3,820,112	-		HER17_RS16975	0.82	-0.8
3,820,112	-		HER17_RS16975	0.82	-1.1
3,820,113	+		HER17_RS16975	0.82	+0.6
3,820,181	+				-0.0
3,820,182	-				-0.3
3,820,190	-				+0.1
3,820,191	+				+1.5
3,820,191	+				+0.0
3,820,192	-				+0.6
3,820,227	+				-0.5
3,820,229	+				+0.2
3,820,229	+				-0.1
3,820,229	+				-0.0
3,820,229	+				-1.4
3,820,231	+				-0.7
3,820,231	+				-0.3
3,820,232	-				+1.0
3,820,239	+				+0.3
3,820,239	+				-0.4
3,820,239	+				-0.1
3,820,240	-				-0.4
3,820,240	-				-0.1
3,820,240	-				+0.4
3,820,241	+				+0.5
3,820,241	+				-0.6
3,820,242	-				+0.0
3,820,242	-				+0.2
3,820,242	-				-0.4
3,820,245	+				+1.3
3,820,245	+				-0.6
3,820,246	-				+0.6
3,820,246	-				+0.0
3,820,246	-				+0.3
3,820,359	-				-0.2
3,820,359	-				+0.4
3,820,359	-				+1.5
3,820,363	+				-0.3
3,820,364	-				+0.4
3,820,364	-				+0.2
3,820,364	-				-0.3
3,820,364	-				-0.2
3,820,628	+		HER17_RS16980	0.29	+0.9
3,820,756	-		HER17_RS16980	0.39	+0.5
3,820,758	-		HER17_RS16980	0.39	-0.4
3,820,788	-		HER17_RS16980	0.41	+0.0
3,820,788	-		HER17_RS16980	0.41	-1.1
3,820,788	-		HER17_RS16980	0.41	+0.5
3,820,886	+		HER17_RS16980	0.48	-0.5
3,820,992	-		HER17_RS16980	0.56	+0.2
3,821,107	-		HER17_RS16980	0.65	-0.8
3,821,107	-		HER17_RS16980	0.65	+0.3
3,821,107	-		HER17_RS16980	0.65	-0.1
3,821,161	+		HER17_RS16980	0.69	-1.3
3,821,161	+		HER17_RS16980	0.69	-0.0
3,821,162	-		HER17_RS16980	0.69	-0.8
3,821,162	-		HER17_RS16980	0.69	+0.2
3,821,166	+		HER17_RS16980	0.70	+0.1
3,821,166	+		HER17_RS16980	0.70	-0.2
3,821,166	+		HER17_RS16980	0.70	+0.5
3,821,166	+		HER17_RS16980	0.70	-0.6
3,821,167	-		HER17_RS16980	0.70	+1.0
3,821,167	-		HER17_RS16980	0.70	-0.3
3,821,167	-		HER17_RS16980	0.70	-1.3
3,821,167	-		HER17_RS16980	0.70	+0.2
3,821,167	-		HER17_RS16980	0.70	-0.0
3,821,254	+		HER17_RS16980	0.76	-0.4
3,821,257	+		HER17_RS16980	0.77	-0.5
3,821,258	-		HER17_RS16980	0.77	-0.4
3,821,258	-		HER17_RS16980	0.77	+0.2
3,821,301	+		HER17_RS16980	0.80	-0.1
3,821,302	-		HER17_RS16980	0.80	+0.5
3,821,304	+		HER17_RS16980	0.80	+0.3
3,821,305	-		HER17_RS16980	0.80	-0.3
3,821,306	+		HER17_RS16980	0.80	+0.1
3,821,307	-		HER17_RS16980	0.80	-0.1
3,821,463	-				+0.7
3,821,490	+				+0.4
3,821,508	+				+0.9
3,821,508	+				+1.7
3,821,509	-				+0.8
3,821,509	-				-0.5
3,821,526	+				-1.3
3,821,527	-				-0.2
3,821,527	-				+0.4
3,821,527	-				+0.5
3,821,571	+				+0.3
3,821,586	-				-0.5
3,821,651	+				+0.4
3,821,651	+				+1.2
3,821,655	+				+0.8
3,821,655	+				-0.2
3,821,656	-				+1.2
3,821,702	+				+0.2
3,821,702	+				+1.1
3,821,702	+				+0.4
3,821,703	-				+0.4
3,821,703	-				-0.1
3,821,710	+				+0.3
3,821,710	+				-0.3
3,821,711	-				+0.8
3,821,711	-				-0.4
3,821,711	-				-0.2
3,821,748	+				-0.1
3,821,749	-				-0.0
3,821,749	-				-0.6
3,821,769	+				-0.1
3,821,770	-				+0.7
3,821,797	+				-0.6
3,821,797	+				+0.7
3,821,798	-				+0.0
3,821,798	-				+0.8
3,821,798	-				+0.3
3,821,799	+				-0.1
3,821,800	-				+0.4
3,821,800	-				-0.6
3,821,800	-				+0.4
3,821,800	-				+0.2
3,821,856	+				+0.4
3,821,857	-				-1.5
3,821,869	+				+0.9
3,821,869	+				+0.6
3,821,869	+				-0.9
3,821,881	-				-0.8
3,821,910	+				-0.3
3,821,911	-				+0.3
3,821,989	+				+1.7
3,822,020	+				+0.2
3,822,021	-				+0.2
3,822,021	-				+0.1
3,822,052	+				-1.4
3,822,053	-				+0.4
3,822,150	-		HER17_RS16985	0.15	+0.4
3,822,170	+		HER17_RS16985	0.16	+0.2
3,822,170	+		HER17_RS16985	0.16	+0.7
3,822,171	-		HER17_RS16985	0.16	-0.2
3,822,181	+		HER17_RS16985	0.17	-0.4
3,822,272	-		HER17_RS16985	0.22	-0.2
3,822,295	+		HER17_RS16985	0.23	-0.8
3,822,344	-		HER17_RS16985	0.25	+1.1
3,822,347	+		HER17_RS16985	0.26	+0.0
3,822,347	+		HER17_RS16985	0.26	+0.1
3,822,347	+		HER17_RS16985	0.26	-0.2
3,822,347	+		HER17_RS16985	0.26	-0.6
3,822,347	+		HER17_RS16985	0.26	+0.4
3,822,347	+		HER17_RS16985	0.26	+0.0
3,822,347	+		HER17_RS16985	0.26	+0.9
3,822,348	-		HER17_RS16985	0.26	+0.2
3,822,348	-		HER17_RS16985	0.26	+0.3
3,822,348	-		HER17_RS16985	0.26	+1.1
3,822,348	-		HER17_RS16985	0.26	-0.1
3,822,348	-		HER17_RS16985	0.26	-0.7
3,822,348	-		HER17_RS16985	0.26	-0.6
3,822,446	+		HER17_RS16985	0.31	+0.0
3,822,446	+		HER17_RS16985	0.31	+0.3
3,822,447	-		HER17_RS16985	0.31	+0.3
3,822,447	-		HER17_RS16985	0.31	+0.8
3,822,454	+		HER17_RS16985	0.31	-0.1
3,822,454	+		HER17_RS16985	0.31	-0.0
3,822,455	-		HER17_RS16985	0.31	-0.0
3,822,476	-		HER17_RS16985	0.32	-0.5
3,822,499	+		HER17_RS16985	0.34	+0.5
3,822,507	-		HER17_RS16985	0.34	-0.0
3,822,528	-		HER17_RS16985	0.35	+0.5
3,822,544	+		HER17_RS16985	0.36	+0.5
3,822,544	+		HER17_RS16985	0.36	+0.4
3,822,545	-		HER17_RS16985	0.36	+0.5
3,822,545	-		HER17_RS16985	0.36	-0.1
3,822,545	-		HER17_RS16985	0.36	+0.3