Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS16300 and HER17_RS16305 are separated by 21 nucleotides HER17_RS16305 and HER17_RS16310 are separated by 9 nucleotides HER17_RS16310 and HER17_RS16315 are separated by 198 nucleotides
HER17_RS16300: HER17_RS16300 - sigma E protease regulator RseP, at 3,678,830 to 3,680,185
_RS16300
HER17_RS16305: HER17_RS16305 - phosphatidate cytidylyltransferase, at 3,680,207 to 3,681,064
_RS16305
HER17_RS16310: HER17_RS16310 - (2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase, at 3,681,074 to 3,681,835
_RS16310
HER17_RS16315: HER17_RS16315 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase, at 3,682,034 to 3,683,230
_RS16315
Position (kb)
3681
3682 Strain fitness (log2 ratio)
-1
0
1 at 3680.186 kb on - strand at 3680.186 kb on - strand at 3680.190 kb on - strand at 3680.190 kb on - strand at 3680.196 kb on - strand at 3680.209 kb on - strand at 3680.219 kb on - strand at 3681.095 kb on - strand at 3681.095 kb on - strand at 3681.095 kb on - strand at 3681.866 kb on - strand at 3681.986 kb on - strand at 3681.988 kb on - strand at 3681.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,680,186 - +0.0 3,680,186 - -0.7 3,680,190 - +1.0 3,680,190 - +0.6 3,680,196 - +0.6 3,680,209 - -0.1 3,680,219 - -0.5 3,681,095 - +0.1 3,681,095 - +0.1 3,681,095 - -0.2 3,681,866 - -0.5 3,681,986 - +0.1 3,681,988 - +0.0 3,681,988 - +0.0
Or see this region's nucleotide sequence