Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14785

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,324,774	+				-0.9
3,324,795	-				-0.4
3,324,795	-				-0.9
3,324,833	+				+0.5
3,324,833	+				-0.2
3,324,834	-				-0.3
3,324,834	-				-0.1
3,324,834	-				-0.7
3,324,891	-				+0.4
3,325,084	-		HER17_RS14775	0.48	-0.5
3,325,089	+		HER17_RS14775	0.49	-0.0
3,325,090	-		HER17_RS14775	0.50	+0.9
3,325,099	+		HER17_RS14775	0.52	-1.0
3,325,100	-		HER17_RS14775	0.52	+0.6
3,325,164	+		HER17_RS14775	0.66	+0.5
3,325,167	+		HER17_RS14775	0.67	-0.2
3,325,168	-		HER17_RS14775	0.67	-0.8
3,325,168	-		HER17_RS14775	0.67	+1.0
3,325,168	-		HER17_RS14775	0.67	+0.3
3,325,184	+		HER17_RS14775	0.70	+0.1
3,325,227	+		HER17_RS14775	0.80	-1.0
3,325,228	-		HER17_RS14775	0.80	+0.2
3,325,228	-		HER17_RS14775	0.80	-0.0
3,325,308	+				-1.1
3,325,309	-				-0.1
3,325,316	-				+0.2
3,325,364	+				-1.3
3,325,365	-				+0.5
3,325,392	-				+0.3
3,325,397	+				-0.8
3,325,398	-				+0.6
3,325,398	-				-1.1
3,325,404	+				-0.1
3,325,404	+				-0.2
3,325,404	+				-0.0
3,325,405	-				-0.2
3,325,405	-				+0.3
3,325,405	-				-0.0
3,325,406	+				+0.2
3,325,406	+				+0.5
3,325,406	+				+0.1
3,325,407	-				-0.2
3,325,407	-				+0.6
3,325,407	-				+0.2
3,325,407	-				+0.3
3,325,536	-		HER17_RS14780	0.41	-0.1
3,325,600	+		HER17_RS14780	0.59	-0.2
3,325,652	-		HER17_RS14780	0.73	-0.4
3,325,664	+		HER17_RS14780	0.77	-1.7
3,325,727	+				+0.6
3,325,859	-				-0.4
3,325,940	+		HER17_RS14785	0.14	+0.1
3,325,958	+		HER17_RS14785	0.16	+0.8
3,325,958	+		HER17_RS14785	0.16	+0.1
3,326,042	+		HER17_RS14785	0.23	-0.8
3,326,043	-		HER17_RS14785	0.23	-0.7
3,326,061	+		HER17_RS14785	0.24	-1.2
3,326,061	+		HER17_RS14785	0.24	-0.0
3,326,062	-		HER17_RS14785	0.24	+0.3
3,326,076	-		HER17_RS14785	0.25	+0.5
3,326,076	-		HER17_RS14785	0.25	-0.3
3,326,084	+		HER17_RS14785	0.26	+0.2
3,326,085	-		HER17_RS14785	0.26	+0.1
3,326,085	-		HER17_RS14785	0.26	+0.4
3,326,129	+		HER17_RS14785	0.29	+0.2
3,326,129	+		HER17_RS14785	0.29	+1.3
3,326,133	-		HER17_RS14785	0.30	-0.6
3,326,133	-		HER17_RS14785	0.30	-0.2
3,326,282	+		HER17_RS14785	0.42	-1.3
3,326,282	+		HER17_RS14785	0.42	-0.3
3,326,416	+		HER17_RS14785	0.52	-0.4
3,326,586	+		HER17_RS14785	0.66	+0.3
3,326,586	+		HER17_RS14785	0.66	-1.1
3,326,587	-		HER17_RS14785	0.66	+0.1
3,326,587	-		HER17_RS14785	0.66	+0.6
3,326,587	-		HER17_RS14785	0.66	-0.5
3,326,611	-		HER17_RS14785	0.68	-1.8
3,326,611	-		HER17_RS14785	0.68	+0.4
3,326,682	+		HER17_RS14785	0.73	+0.7
3,326,683	-		HER17_RS14785	0.73	+0.2
3,326,866	-		HER17_RS14785	0.88	+0.3
3,326,882	+		HER17_RS14785	0.89	+0.1
3,326,883	-		HER17_RS14785	0.89	+0.8
3,326,946	-				+1.1
3,326,968	-				-0.1
3,327,093	-				+0.0
3,327,131	-				-0.4
3,327,164	+				+0.2
3,327,165	-		HER17_RS14790	0.10	-0.5
3,327,185	-		HER17_RS14790	0.11	-0.0
3,327,185	-		HER17_RS14790	0.11	-0.5
3,327,218	-		HER17_RS14790	0.14	+0.9
3,327,223	+		HER17_RS14790	0.14	-0.1
3,327,390	+		HER17_RS14790	0.25	+0.2
3,327,390	+		HER17_RS14790	0.25	-0.0
3,327,394	+		HER17_RS14790	0.25	-1.0
3,327,395	-		HER17_RS14790	0.25	-0.1
3,327,395	-		HER17_RS14790	0.25	-0.1
3,327,395	-		HER17_RS14790	0.25	+0.0
3,327,521	+		HER17_RS14790	0.34	+0.6
3,327,711	+		HER17_RS14790	0.46	-0.5
3,327,880	+		HER17_RS14790	0.58	+0.1
3,327,881	-		HER17_RS14790	0.58	-0.5
3,327,928	+		HER17_RS14790	0.61	-0.0
3,327,947	-		HER17_RS14790	0.62	-0.4
3,327,956	-		HER17_RS14790	0.63	-0.1
3,327,959	+		HER17_RS14790	0.63	+0.1
3,327,959	+		HER17_RS14790	0.63	+1.7
3,327,959	+		HER17_RS14790	0.63	+0.9
3,327,959	+		HER17_RS14790	0.63	+0.5
3,327,959	+		HER17_RS14790	0.63	+0.4
3,327,960	-		HER17_RS14790	0.63	-1.0
3,327,960	-		HER17_RS14790	0.63	-0.0