Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS12550

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,802,378	+		HER17_RS12545	0.43	-0.3
2,802,380	+		HER17_RS12545	0.43	-0.3
2,802,382	-		HER17_RS12545	0.44	+2.4
2,802,420	+		HER17_RS12545	0.47	+0.1
2,802,421	-		HER17_RS12545	0.47	-0.0
2,802,456	-		HER17_RS12545	0.50	+0.2
2,802,490	+		HER17_RS12545	0.52	+0.3
2,802,549	+		HER17_RS12545	0.57	-0.0
2,802,573	+		HER17_RS12545	0.59	-0.6
2,802,587	+		HER17_RS12545	0.61	-0.7
2,802,587	+		HER17_RS12545	0.61	-0.5
2,802,588	-		HER17_RS12545	0.61	-0.0
2,802,588	-		HER17_RS12545	0.61	+0.0
2,802,588	-		HER17_RS12545	0.61	-0.7
2,802,648	+		HER17_RS12545	0.66	+0.4
2,802,684	+		HER17_RS12545	0.69	+0.2
2,802,839	+		HER17_RS12545	0.81	+0.3
2,802,839	+		HER17_RS12545	0.81	+0.2
2,802,840	-		HER17_RS12545	0.82	+0.1
2,802,909	+		HER17_RS12545	0.87	-0.5
2,802,933	+		HER17_RS12545	0.89	+0.4
2,802,933	+		HER17_RS12545	0.89	-0.5
2,802,934	-		HER17_RS12545	0.89	-0.4
2,802,935	+		HER17_RS12545	0.89	-0.8
2,802,935	+		HER17_RS12545	0.89	+0.3
2,802,935	+		HER17_RS12545	0.89	-1.8
2,802,936	-		HER17_RS12545	0.89	-0.1
2,802,936	-		HER17_RS12545	0.89	-0.4
2,803,014	+				+0.4
2,803,014	+				-0.5
2,803,019	-				-0.9
2,803,019	-				-0.5
2,803,019	-				+0.2
2,803,134	+				+1.0
2,803,134	+				-0.2
2,803,134	+				-0.4
2,803,134	+				+0.4
2,803,135	-				+0.1
2,803,135	-				+0.6
2,803,135	-				+0.0
2,803,135	-				+0.6
2,803,346	-				+0.3
2,803,346	-				-0.1
2,803,469	-		HER17_RS12550	0.18	+0.7
2,803,616	+		HER17_RS12550	0.40	-0.1
2,803,616	+		HER17_RS12550	0.40	-0.5
2,803,617	-		HER17_RS12550	0.40	-0.5
2,803,702	+		HER17_RS12550	0.53	-0.4
2,803,702	+		HER17_RS12550	0.53	+0.5
2,803,757	+		HER17_RS12550	0.62	+0.7
2,803,817	+		HER17_RS12550	0.71	+0.3
2,803,829	+		HER17_RS12550	0.73	+1.4
2,803,829	+		HER17_RS12550	0.73	-1.4
2,803,829	+		HER17_RS12550	0.73	-0.3
2,803,830	-		HER17_RS12550	0.73	-0.6
2,803,830	-		HER17_RS12550	0.73	+0.6
2,803,855	+		HER17_RS12550	0.77	+0.1
2,803,938	+		HER17_RS12550	0.89	+0.5
2,803,938	+		HER17_RS12550	0.89	+0.2
2,803,939	-		HER17_RS12550	0.89	+0.1
2,803,998	+				-0.9
2,803,999	-				+0.2
2,804,246	-		HER17_RS12555	0.24	+1.0
2,804,307	+		HER17_RS12555	0.30	-0.0
2,804,440	-		HER17_RS12555	0.43	+1.2
2,804,565	+		HER17_RS12555	0.55	+0.4
2,804,566	-		HER17_RS12555	0.55	+0.3
2,804,566	-		HER17_RS12555	0.55	-0.1
2,804,570	-		HER17_RS12555	0.56	+1.0
2,804,755	+		HER17_RS12555	0.74	-0.2
2,804,756	-		HER17_RS12555	0.74	+0.3
2,804,756	-		HER17_RS12555	0.74	+0.2
2,804,999	-				-0.0
2,805,007	+				-1.1
2,805,008	-				+0.7