Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09325

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,045,261	-		HER17_RS09320	0.45	+0.2
2,045,269	+		HER17_RS09320	0.45	+0.4
2,045,270	-		HER17_RS09320	0.45	-0.2
2,045,282	+		HER17_RS09320	0.46	+0.2
2,045,282	+		HER17_RS09320	0.46	-0.2
2,045,283	-		HER17_RS09320	0.46	-0.0
2,045,283	-		HER17_RS09320	0.46	+0.5
2,045,283	-		HER17_RS09320	0.46	+0.8
2,045,324	-		HER17_RS09320	0.49	-0.7
2,045,426	-		HER17_RS09320	0.55	-0.2
2,045,429	+		HER17_RS09320	0.55	+0.0
2,045,429	+		HER17_RS09320	0.55	-0.7
2,045,429	+		HER17_RS09320	0.55	-1.6
2,045,430	-		HER17_RS09320	0.55	-0.1
2,045,430	-		HER17_RS09320	0.55	-0.2
2,045,430	-		HER17_RS09320	0.55	-0.2
2,045,430	-		HER17_RS09320	0.55	-0.3
2,045,430	-		HER17_RS09320	0.55	-0.6
2,045,447	-		HER17_RS09320	0.56	-0.4
2,045,512	+		HER17_RS09320	0.60	+0.3
2,045,529	+		HER17_RS09320	0.61	+0.6
2,045,530	-		HER17_RS09320	0.61	+0.4
2,045,530	-		HER17_RS09320	0.61	+0.4
2,045,577	+		HER17_RS09320	0.64	-0.7
2,045,578	-		HER17_RS09320	0.64	-1.0
2,045,632	+		HER17_RS09320	0.67	+0.1
2,045,632	+		HER17_RS09320	0.67	+0.7
2,045,705	+		HER17_RS09320	0.72	+1.2
2,045,705	+		HER17_RS09320	0.72	-0.1
2,045,706	-		HER17_RS09320	0.72	+0.2
2,045,823	+		HER17_RS09320	0.79	+0.5
2,045,823	+		HER17_RS09320	0.79	-0.0
2,045,824	-		HER17_RS09320	0.79	-0.4
2,045,824	-		HER17_RS09320	0.79	+0.6
2,045,827	+		HER17_RS09320	0.79	-0.3
2,045,827	+		HER17_RS09320	0.79	-0.2
2,045,828	-		HER17_RS09320	0.79	-0.6
2,045,871	-		HER17_RS09320	0.82	-0.0
2,045,884	+		HER17_RS09320	0.83	+1.2
2,045,948	+		HER17_RS09320	0.87	+0.0
2,045,948	+		HER17_RS09320	0.87	+0.5
2,045,948	+		HER17_RS09320	0.87	+0.1
2,045,948	+		HER17_RS09320	0.87	-0.9
2,045,948	+		HER17_RS09320	0.87	+0.0
2,045,987	-		HER17_RS09320	0.89	+0.1
2,046,008	+				-0.8
2,046,008	+				+0.5
2,046,026	-				-0.3
2,046,031	-				-0.2
2,046,034	+				-0.3
2,046,034	+				-1.3
2,046,034	+				+0.2
2,046,059	+				+0.7
2,046,059	+				+0.0
2,046,059	+				-0.4
2,046,059	+				+1.9
2,046,059	+				+0.9
2,046,060	-				-0.3
2,046,060	-				-0.1
2,046,060	-				+0.1
2,046,060	-				-0.6
2,046,060	-				-0.6
2,046,060	-				-0.4
2,046,060	-				-0.3
2,046,062	+				-0.1
2,046,062	+				-0.3
2,046,063	-				+0.2
2,046,063	-				-1.2
2,046,063	-				-1.3
2,046,063	-				+0.1
2,046,063	-				-0.3
2,046,063	-				+0.0
2,046,065	+				-0.5
2,046,065	+				-1.9
2,046,065	+				+0.4
2,046,066	-				-1.6
2,046,092	+				-0.3
2,046,092	+				-0.8
2,046,092	+				+0.4
2,046,092	+				+0.3
2,046,092	+				+0.7
2,046,093	-				-0.0
2,046,093	-				-0.4
2,046,093	-				-0.6
2,046,094	+				-0.8
2,046,095	-				-1.3
2,046,095	-				-0.6
2,046,128	+				-0.2
2,046,131	+				+0.6
2,046,146	+				+1.0
2,046,146	+				+0.2
2,046,146	+				-0.8
2,046,147	-				-0.1
2,046,147	-				+0.8
2,046,147	-				-1.4
2,046,197	+				-0.0
2,046,197	+				+0.4
2,046,960	-				-0.1
2,047,111	-				-0.8
2,047,150	+				+0.4
2,047,158	-				-3.0
2,047,169	+				-1.2
2,047,170	-				-1.3
2,047,170	-				+1.2
2,047,170	-				-1.1
2,047,225	+		HER17_RS09330	0.15	+1.0
2,047,225	+		HER17_RS09330	0.15	-0.4
2,047,226	-		HER17_RS09330	0.15	-2.3
2,047,238	+		HER17_RS09330	0.17	-0.3
2,047,239	-		HER17_RS09330	0.17	-0.1
2,047,286	+		HER17_RS09330	0.23	-0.9
2,047,286	+		HER17_RS09330	0.23	+0.1
2,047,422	+		HER17_RS09330	0.41	-1.4
2,047,423	-		HER17_RS09330	0.41	-1.3
2,047,423	-		HER17_RS09330	0.41	-1.2
2,047,423	-		HER17_RS09330	0.41	-0.9
2,047,464	+		HER17_RS09330	0.46	-0.3
2,047,464	+		HER17_RS09330	0.46	-1.1
2,047,464	+		HER17_RS09330	0.46	-0.0
2,047,464	+		HER17_RS09330	0.46	-0.4
2,047,465	-		HER17_RS09330	0.46	-0.6
2,047,465	-		HER17_RS09330	0.46	-0.5
2,047,465	-		HER17_RS09330	0.46	-0.5
2,047,658	+		HER17_RS09330	0.71	-0.1
2,047,658	+		HER17_RS09330	0.71	+0.6
2,047,659	-		HER17_RS09330	0.71	+0.4
2,047,659	-		HER17_RS09330	0.71	-1.1
2,047,714	+		HER17_RS09330	0.78	-0.8
2,047,757	-		HER17_RS09330	0.84	-0.6
2,047,760	+		HER17_RS09330	0.84	-0.2
2,047,760	+		HER17_RS09330	0.84	-0.2
2,047,761	-		HER17_RS09330	0.84	-0.8
2,047,827	+				+0.3