Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08395

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,849,933	+		HER17_RS08390	0.39	+0.2
1,850,009	-		HER17_RS08390	0.44	+0.6
1,850,215	+		HER17_RS08390	0.58	+0.3
1,850,216	-		HER17_RS08390	0.58	+1.2
1,850,251	-		HER17_RS08390	0.61	+0.0
1,850,375	+		HER17_RS08390	0.69	+1.3
1,850,445	-		HER17_RS08390	0.74	-0.7
1,850,460	-		HER17_RS08390	0.75	+1.1
1,850,497	+		HER17_RS08390	0.77	+0.4
1,850,497	+		HER17_RS08390	0.77	-1.4
1,850,497	+		HER17_RS08390	0.77	+0.5
1,850,498	-		HER17_RS08390	0.77	-0.9
1,850,539	+		HER17_RS08390	0.80	-1.2
1,850,595	-		HER17_RS08390	0.84	+0.0
1,850,757	+				-0.3
1,850,757	+				+0.4
1,850,774	+				+0.4
1,850,776	+				-0.4
1,850,777	-				-0.5
1,850,829	-				+0.3
1,850,849	-				+0.1
1,850,862	+				-0.8
1,850,862	+				+0.4
1,850,862	+				+0.2
1,850,862	+				-0.4
1,850,863	-				-0.2
1,850,863	-				+0.3
1,850,863	-				+1.1
1,850,863	-				-0.3
1,850,863	-				+0.1
1,850,863	-				-0.3
1,850,863	-				-0.5
1,851,002	-				-0.3
1,851,028	-		HER17_RS08395	0.11	+0.6
1,851,029	+		HER17_RS08395	0.11	+0.9
1,851,039	+		HER17_RS08395	0.11	-0.3
1,851,063	-		HER17_RS08395	0.13	-0.8
1,851,063	-		HER17_RS08395	0.13	-0.3
1,851,068	+		HER17_RS08395	0.13	-0.4
1,851,135	+		HER17_RS08395	0.17	-1.5
1,851,135	+		HER17_RS08395	0.17	-1.5
1,851,135	+		HER17_RS08395	0.17	+0.1
1,851,135	+		HER17_RS08395	0.17	+0.1
1,851,135	+		HER17_RS08395	0.17	-0.1
1,851,135	+		HER17_RS08395	0.17	+0.5
1,851,135	+		HER17_RS08395	0.17	-0.3
1,851,136	-		HER17_RS08395	0.17	+1.1
1,851,201	+		HER17_RS08395	0.21	+0.4
1,851,219	+		HER17_RS08395	0.22	-0.7
1,851,219	+		HER17_RS08395	0.22	-0.3
1,851,220	-		HER17_RS08395	0.22	+0.7
1,851,261	+		HER17_RS08395	0.24	+0.8
1,851,261	+		HER17_RS08395	0.24	-1.0
1,851,262	-		HER17_RS08395	0.25	-0.0
1,851,262	-		HER17_RS08395	0.25	-1.0
1,851,262	-		HER17_RS08395	0.25	-0.2
1,851,262	-		HER17_RS08395	0.25	+0.1
1,851,365	+		HER17_RS08395	0.31	+0.7
1,851,413	+		HER17_RS08395	0.34	-0.4
1,851,559	-		HER17_RS08395	0.42	+0.1
1,851,750	+		HER17_RS08395	0.54	+0.7
1,851,759	+		HER17_RS08395	0.54	-0.2
1,851,760	-		HER17_RS08395	0.54	+0.4
1,851,807	-		HER17_RS08395	0.57	-0.4
1,851,887	+		HER17_RS08395	0.62	+0.5
1,851,955	-		HER17_RS08395	0.66	-1.2
1,851,965	+		HER17_RS08395	0.66	+0.2
1,851,966	-		HER17_RS08395	0.66	-0.2
1,852,033	+		HER17_RS08395	0.70	-0.5
1,852,034	-		HER17_RS08395	0.70	+0.2
1,852,034	-		HER17_RS08395	0.70	-0.3
1,852,067	+		HER17_RS08395	0.72	-0.2
1,852,068	-		HER17_RS08395	0.72	-0.4
1,852,068	-		HER17_RS08395	0.72	+0.8
1,852,083	+		HER17_RS08395	0.73	+0.3
1,852,083	+		HER17_RS08395	0.73	+0.4
1,852,084	-		HER17_RS08395	0.73	+0.4
1,852,084	-		HER17_RS08395	0.73	+0.5
1,852,084	-		HER17_RS08395	0.73	-0.1
1,852,084	-		HER17_RS08395	0.73	+0.5
1,852,084	-		HER17_RS08395	0.73	-0.5
1,852,084	-		HER17_RS08395	0.73	-0.6
1,852,085	+		HER17_RS08395	0.74	+0.8
1,852,085	+		HER17_RS08395	0.74	+0.7
1,852,085	+		HER17_RS08395	0.74	-0.7
1,852,085	+		HER17_RS08395	0.74	+0.4
1,852,086	-		HER17_RS08395	0.74	+0.2
1,852,086	-		HER17_RS08395	0.74	-0.4
1,852,086	-		HER17_RS08395	0.74	+0.1
1,852,166	+		HER17_RS08395	0.78	+0.9
1,852,170	+		HER17_RS08395	0.79	+0.4
1,852,170	+		HER17_RS08395	0.79	+0.2
1,852,171	-		HER17_RS08395	0.79	-0.5
1,852,171	-		HER17_RS08395	0.79	+0.4
1,852,277	+		HER17_RS08395	0.85	-0.0
1,852,278	-		HER17_RS08395	0.85	-0.4
1,852,278	-		HER17_RS08395	0.85	-0.5
1,852,278	-		HER17_RS08395	0.85	+0.5
1,852,278	-		HER17_RS08395	0.85	-0.3
1,852,362	-				-0.7
1,852,376	+				-0.1
1,852,377	-				+0.6
1,852,407	-				+0.1
1,852,476	+				+0.2
1,852,476	+				-0.0
1,852,476	+				+0.7
1,852,541	+				+0.2
1,852,542	-				-0.3
1,852,587	+				+0.3
1,852,600	+				+0.2
1,852,601	-				+0.3
1,852,601	-				+0.9
1,852,601	-				+0.3
1,852,601	-				+0.2
1,852,603	-				+0.1
1,852,603	-				+0.2
1,852,637	+				-0.4
1,852,637	+				+0.2
1,852,637	+				+1.1
1,852,638	-				-1.5
1,852,640	+				-2.2
1,852,640	+				-0.3
1,852,641	-				+1.1
1,852,641	-				-0.0
1,852,641	-				-0.1
1,852,641	-				-0.2
1,852,641	-				+0.3
1,852,641	-				-0.5
1,852,641	-				+0.0
1,852,694	+				+0.2
1,852,695	-				+0.6
1,852,720	+				+0.5
1,852,785	-		HER17_RS08400	0.15	-0.5
1,852,836	-		HER17_RS08400	0.22	-1.0
1,852,836	-		HER17_RS08400	0.22	-0.8
1,852,842	-		HER17_RS08400	0.23	-1.8
1,853,052	-		HER17_RS08400	0.56	-0.2
1,853,052	-		HER17_RS08400	0.56	-0.2
1,853,075	+		HER17_RS08400	0.59	+0.1
1,853,076	-		HER17_RS08400	0.59	-0.4
1,853,087	+		HER17_RS08400	0.61	-0.3
1,853,088	-		HER17_RS08400	0.61	-0.0
1,853,140	+		HER17_RS08400	0.69	-1.7
1,853,141	-		HER17_RS08400	0.69	+0.3
1,853,141	-		HER17_RS08400	0.69	+0.4
1,853,208	+		HER17_RS08400	0.79	+0.0
1,853,259	+		HER17_RS08400	0.87	+0.2
1,853,290	+				+0.7
1,853,340	+				+0.2
1,853,340	+				+0.3
1,853,341	-				+1.7
1,853,341	-				-0.8
1,853,341	-				-0.5
1,853,341	-				-0.2
1,853,341	-				-1.1
1,853,344	-				-2.0
1,853,357	+				+0.3
1,853,372	+				+0.3
1,853,438	+				-0.1