Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS07305

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,617,375	-		HER17_RS21925	0.57	+0.7
1,617,405	-		HER17_RS21925	0.59	-0.3
1,617,479	+		HER17_RS21925	0.63	-0.1
1,617,479	+		HER17_RS21925	0.63	-0.0
1,617,480	-		HER17_RS21925	0.63	-0.0
1,617,483	+		HER17_RS21925	0.63	-0.1
1,617,483	+		HER17_RS21925	0.63	+0.7
1,617,591	-		HER17_RS21925	0.69	-0.4
1,617,655	+		HER17_RS21925	0.73	-1.1
1,617,656	-		HER17_RS21925	0.73	+0.4
1,617,739	-		HER17_RS21925	0.77	+0.8
1,617,764	+		HER17_RS21925	0.79	-0.5
1,617,765	-		HER17_RS21925	0.79	-0.3
1,617,765	-		HER17_RS21925	0.79	+0.4
1,617,940	+		HER17_RS21925	0.89	-0.1
1,617,941	-		HER17_RS21925	0.89	+0.6
1,617,941	-		HER17_RS21925	0.89	-2.3
1,617,941	-		HER17_RS21925	0.89	-0.6
1,617,941	-		HER17_RS21925	0.89	+1.0
1,617,984	-				+0.8
1,618,015	+				-0.2
1,618,015	+				+0.7
1,618,089	+				+0.0
1,618,103	-				-0.1
1,618,167	+				+0.1
1,618,178	+				+0.3
1,618,179	-				+0.4
1,618,181	+				+0.0
1,618,197	-				-0.1
1,618,220	-				-1.3
1,618,254	-				-0.1
1,618,254	-				-1.7
1,618,336	+				+0.1
1,618,405	+				-2.4
1,618,495	+				+0.3
1,618,495	+				+0.5
1,618,496	-				+0.2
1,618,496	-				+1.3
1,618,924	-		HER17_RS07305	0.43	-0.2
1,619,001	-		HER17_RS07305	0.49	-0.2
1,619,016	-		HER17_RS07305	0.50	+0.9
1,619,341	+		HER17_RS07305	0.75	+0.5
1,619,341	+		HER17_RS07305	0.75	+1.6
1,619,342	-		HER17_RS07305	0.75	+0.3
1,619,342	-		HER17_RS07305	0.75	+0.3
1,619,342	-		HER17_RS07305	0.75	-1.1
1,619,342	-		HER17_RS07305	0.75	+0.3
1,619,342	-		HER17_RS07305	0.75	+0.7
1,619,371	+		HER17_RS07305	0.78	+0.3
1,619,372	-		HER17_RS07305	0.78	-0.4
1,619,375	+		HER17_RS07305	0.78	+0.7
1,619,375	+		HER17_RS07305	0.78	-0.2
1,619,375	+		HER17_RS07305	0.78	-0.2
1,619,375	+		HER17_RS07305	0.78	+0.2
1,619,376	-		HER17_RS07305	0.78	+0.5
1,619,376	-		HER17_RS07305	0.78	-0.7
1,619,542	+				-0.7
1,619,641	+				+0.6
1,619,665	+				-0.3
1,619,666	-				+0.0
1,619,667	+				-0.6
1,619,667	+				+0.2
1,619,667	+				+0.1
1,619,667	+				+0.5
1,619,667	+				+0.3
1,619,668	-				+0.3
1,619,668	-				+1.3
1,619,668	-				-0.5
1,619,750	+				+0.2
1,619,751	-				+0.1
1,619,751	-				-0.5
1,619,751	-				+0.3
1,619,751	-				+0.1
1,619,788	-				-0.4
1,619,788	-				-0.9
1,619,792	+				+1.2
1,619,792	+				+0.4
1,619,792	+				+0.4
1,619,793	-				-1.7
1,619,793	-				-0.1
1,619,975	+				+0.4
1,619,975	+				-0.2
1,619,976	-				-0.5
1,620,039	+				+0.4
1,620,039	+				+0.4
1,620,094	+				+0.6
1,620,096	+				+1.0
1,620,096	+				+0.3
1,620,096	+				-0.5
1,620,096	+				+0.3
1,620,097	-				+0.4
1,620,108	+				+0.7
1,620,109	-				+0.7
1,620,109	-				-0.4
1,620,170	+				+0.3
1,620,178	+				+0.6
1,620,198	+				-0.1
1,620,198	+				+0.6
1,620,198	+				-0.0
1,620,557	+		HER17_RS07315	0.17	+0.6
1,620,558	+		HER17_RS07315	0.17	+0.4
1,620,650	+		HER17_RS07315	0.25	+0.0
1,620,650	+		HER17_RS07315	0.25	+0.6