Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06190

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,372,090	+				+0.8
1,372,091	-				-0.1
1,372,188	+				+1.1
1,372,188	+				+0.4
1,372,188	+				+1.0
1,372,188	+				-0.8
1,372,188	+				-0.4
1,372,189	-				-0.4
1,372,189	-				+0.8
1,372,199	-				+0.4
1,372,235	+				+1.0
1,372,261	+				+0.2
1,372,262	-				+0.1
1,372,262	-				-0.6
1,372,263	+				-0.2
1,372,263	+				+1.4
1,372,263	+				+0.9
1,372,264	-				+0.2
1,372,269	-				+0.1
1,372,269	-				+1.1
1,372,304	+				-0.0
1,372,305	-				-0.1
1,372,305	-				+0.7
1,372,327	-				+0.3
1,372,357	+				-0.4
1,372,357	+				-0.2
1,372,358	-				-0.5
1,372,495	-		HER17_RS06185	0.56	+0.2
1,372,606	+				+0.3
1,372,607	-				-1.6
1,372,637	+				+0.3
1,372,637	+				+0.6
1,372,637	+				+0.3
1,372,637	+				+0.6
1,372,638	-				+0.5
1,372,638	-				-0.1
1,372,638	-				+0.3
1,372,651	+				+0.4
1,372,749	+				-0.0
1,372,749	+				+0.5
1,372,750	-				+0.2
1,372,750	-				-0.1
1,372,750	-				+0.2
1,372,776	+				-0.4
1,372,777	-				-0.0
1,372,777	-				+0.5
1,372,783	+				-0.6
1,372,783	+				+0.1
1,372,784	-				-0.3
1,372,784	-				+0.2
1,372,784	-				+0.1
1,372,791	-				-0.3
1,372,822	+				-0.7
1,372,865	+				-0.2
1,372,865	+				+0.5
1,372,865	+				-0.8
1,372,865	+				+0.4
1,372,901	-				+0.7
1,372,901	-				-0.5
1,372,982	+				+0.1
1,372,992	+				+0.8
1,373,027	-				+0.1
1,373,341	+		HER17_RS06190	0.28	-0.2
1,373,342	-		HER17_RS06190	0.28	+0.5
1,373,399	-		HER17_RS06190	0.34	+0.3
1,373,410	+		HER17_RS06190	0.35	-0.5
1,373,410	+		HER17_RS06190	0.35	-0.6
1,373,411	-		HER17_RS06190	0.35	-1.1
1,373,411	-		HER17_RS06190	0.35	-0.5
1,373,411	-		HER17_RS06190	0.35	-0.3
1,373,416	-		HER17_RS06190	0.35	-0.5
1,373,418	+		HER17_RS06190	0.36	-0.4
1,373,419	-		HER17_RS06190	0.36	+1.1
1,373,438	+		HER17_RS06190	0.38	+0.3
1,373,439	-		HER17_RS06190	0.38	-1.6
1,373,470	+		HER17_RS06190	0.41	-0.5
1,373,502	+		HER17_RS06190	0.44	+0.3
1,373,502	+		HER17_RS06190	0.44	-0.1
1,373,502	+		HER17_RS06190	0.44	-0.3
1,373,502	+		HER17_RS06190	0.44	+0.1
1,373,502	+		HER17_RS06190	0.44	+1.1
1,373,502	+		HER17_RS06190	0.44	-0.5
1,373,503	-		HER17_RS06190	0.44	+0.8
1,373,526	+		HER17_RS06190	0.46	+0.4
1,373,526	+		HER17_RS06190	0.46	+0.4
1,373,526	+		HER17_RS06190	0.46	+0.3
1,373,526	+		HER17_RS06190	0.46	+0.2
1,373,527	-		HER17_RS06190	0.46	+0.3
1,373,527	-		HER17_RS06190	0.46	-0.5
1,373,569	-		HER17_RS06190	0.50	+0.7
1,373,625	-		HER17_RS06190	0.56	-0.1
1,373,634	+		HER17_RS06190	0.57	+0.0
1,373,635	-		HER17_RS06190	0.57	+0.4
1,373,635	-		HER17_RS06190	0.57	-0.1
1,373,645	+		HER17_RS06190	0.58	-0.8
1,373,646	-		HER17_RS06190	0.58	+0.9
1,373,646	-		HER17_RS06190	0.58	-0.0
1,373,728	+		HER17_RS06190	0.66	-0.1
1,373,851	-		HER17_RS06190	0.78	-1.1
1,373,851	-		HER17_RS06190	0.78	+0.7
1,373,851	-		HER17_RS06190	0.78	-0.4
1,373,875	+		HER17_RS06190	0.80	+0.4
1,373,962	-		HER17_RS06190	0.89	-0.1
1,373,985	+				+0.2
1,373,985	+				+1.2
1,373,986	-				-0.4
1,374,031	+				+0.7
1,374,032	-				-0.8
1,374,032	-				-0.9
1,374,078	+				-0.4
1,374,078	+				-0.3
1,374,078	+				-0.9
1,374,079	-				+0.5
1,374,245	+				-0.1
1,374,264	-				+0.0
1,374,264	-				+1.1
1,374,344	+		HER17_RS06195	0.13	-0.4
1,374,350	+		HER17_RS06195	0.13	+0.0
1,374,358	+		HER17_RS06195	0.14	-0.2
1,374,359	-		HER17_RS06195	0.15	-0.7
1,374,412	+		HER17_RS06195	0.21	-0.2
1,374,463	+		HER17_RS06195	0.28	-0.2
1,374,590	+		HER17_RS06195	0.44	-1.4
1,374,590	+		HER17_RS06195	0.44	-1.1
1,374,590	+		HER17_RS06195	0.44	+0.1
1,374,590	+		HER17_RS06195	0.44	+0.0
1,374,594	+		HER17_RS06195	0.45	-0.1
1,374,594	+		HER17_RS06195	0.45	+0.8
1,374,595	-		HER17_RS06195	0.45	-0.7
1,374,641	-		HER17_RS06195	0.51	-0.9
1,374,686	+		HER17_RS06195	0.57	+0.8
1,374,721	-		HER17_RS06195	0.61	+0.1
1,374,881	-		HER17_RS06195	0.82	+0.0
1,374,881	-		HER17_RS06195	0.82	+0.5
1,374,881	-		HER17_RS06195	0.82	+0.0
1,374,936	-		HER17_RS06195	0.89	+0.4
1,374,936	-		HER17_RS06195	0.89	+0.3
1,374,936	-		HER17_RS06195	0.89	-0.1
1,374,936	-		HER17_RS06195	0.89	+0.3
1,374,945	-				+0.6
1,374,950	+				-1.0
1,374,950	+				+0.2
1,374,950	+				-0.2
1,374,950	+				+0.2
1,374,950	+				-0.0
1,374,951	-				+0.3
1,374,951	-				+0.4
1,374,951	-				+0.3
1,374,951	-				+0.2
1,374,989	+				-0.1
1,375,013	+				+0.7
1,375,014	-				-0.8
1,375,017	+				-1.4
1,375,017	+				+1.2
1,375,018	-				+0.1
1,375,018	-				-1.2
1,375,018	-				-0.2
1,375,065	-				+0.8
1,375,065	-				-0.3
1,375,065	-				-1.3
1,375,065	-				+0.5
1,375,068	+				+0.9
1,375,069	-				+0.3
1,375,069	-				+0.4
1,375,070	+				-0.9
1,375,070	+				-0.3
1,375,070	+				-2.6
1,375,070	+				+0.6
1,375,071	-				+0.1
1,375,071	-				+0.5
1,375,071	-				-0.4
1,375,072	-				-0.1