Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04240 and HER17_RS04245 are separated by 12 nucleotides HER17_RS04245 and HER17_RS04250 are separated by 309 nucleotides
HER17_RS04240: HER17_RS04240 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 969,671 to 971,404
_RS04240
HER17_RS04245: HER17_RS04245 - phosphoadenylyl-sulfate reductase, at 971,417 to 972,151
_RS04245
HER17_RS04250: HER17_RS04250 - ABC transporter substrate-binding protein, at 972,461 to 974,023
_RS04250
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 970.514 kb on + strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.515 kb on - strand, within HER17_RS04240 at 970.532 kb on - strand, within HER17_RS04240 at 970.595 kb on - strand, within HER17_RS04240 at 970.750 kb on + strand, within HER17_RS04240 at 970.751 kb on - strand, within HER17_RS04240 at 970.751 kb on - strand, within HER17_RS04240 at 970.906 kb on + strand, within HER17_RS04240 at 970.906 kb on + strand, within HER17_RS04240 at 970.907 kb on - strand, within HER17_RS04240 at 970.975 kb on + strand, within HER17_RS04240 at 970.975 kb on + strand, within HER17_RS04240 at 971.104 kb on + strand, within HER17_RS04240 at 971.105 kb on - strand, within HER17_RS04240 at 971.192 kb on + strand, within HER17_RS04240 at 971.192 kb on + strand, within HER17_RS04240 at 971.194 kb on + strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.240 kb on - strand at 971.243 kb on + strand at 971.243 kb on + strand at 971.362 kb on + strand at 971.362 kb on + strand at 971.363 kb on - strand at 971.363 kb on - strand at 971.365 kb on + strand at 971.365 kb on + strand at 971.429 kb on - strand at 971.488 kb on - strand at 971.488 kb on - strand at 971.558 kb on + strand, within HER17_RS04245 at 971.630 kb on - strand, within HER17_RS04245 at 971.630 kb on - strand, within HER17_RS04245 at 971.638 kb on + strand, within HER17_RS04245 at 971.639 kb on - strand, within HER17_RS04245 at 971.639 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.707 kb on - strand, within HER17_RS04245 at 971.807 kb on + strand, within HER17_RS04245 at 971.821 kb on + strand, within HER17_RS04245 at 971.857 kb on - strand, within HER17_RS04245 at 971.917 kb on - strand, within HER17_RS04245 at 971.917 kb on - strand, within HER17_RS04245 at 971.987 kb on + strand, within HER17_RS04245 at 971.987 kb on + strand, within HER17_RS04245 at 971.988 kb on - strand, within HER17_RS04245 at 971.994 kb on - strand, within HER17_RS04245 at 971.994 kb on - strand, within HER17_RS04245 at 972.017 kb on + strand, within HER17_RS04245 at 972.017 kb on + strand, within HER17_RS04245 at 972.041 kb on + strand, within HER17_RS04245 at 972.216 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.241 kb on + strand at 972.280 kb on + strand at 972.300 kb on + strand at 972.301 kb on - strand at 972.301 kb on - strand at 972.341 kb on + strand at 972.389 kb on - strand at 972.389 kb on - strand at 972.413 kb on - strand at 972.478 kb on + strand at 972.555 kb on + strand at 972.611 kb on - strand at 972.724 kb on + strand, within HER17_RS04250 at 972.725 kb on - strand, within HER17_RS04250 at 972.854 kb on + strand, within HER17_RS04250 at 972.854 kb on + strand, within HER17_RS04250 at 972.855 kb on - strand, within HER17_RS04250 at 972.855 kb on - strand, within HER17_RS04250 at 972.855 kb on - strand, within HER17_RS04250 at 972.869 kb on - strand, within HER17_RS04250 at 972.962 kb on + strand, within HER17_RS04250 at 973.052 kb on + strand, within HER17_RS04250 at 973.053 kb on - strand, within HER17_RS04250 at 973.053 kb on - strand, within HER17_RS04250 at 973.055 kb on - strand, within HER17_RS04250 at 973.055 kb on - strand, within HER17_RS04250 at 973.055 kb on - strand, within HER17_RS04250 at 973.110 kb on - strand, within HER17_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 970,514 + HER17_RS04240 0.49 -0.6 970,514 + HER17_RS04240 0.49 +0.0 970,515 - HER17_RS04240 0.49 +1.7 970,532 - HER17_RS04240 0.50 -0.6 970,595 - HER17_RS04240 0.53 -0.9 970,750 + HER17_RS04240 0.62 -0.4 970,751 - HER17_RS04240 0.62 -0.2 970,751 - HER17_RS04240 0.62 -3.1 970,906 + HER17_RS04240 0.71 -0.2 970,906 + HER17_RS04240 0.71 +0.3 970,907 - HER17_RS04240 0.71 +1.1 970,975 + HER17_RS04240 0.75 -0.2 970,975 + HER17_RS04240 0.75 +0.2 971,104 + HER17_RS04240 0.83 +0.2 971,105 - HER17_RS04240 0.83 -1.0 971,192 + HER17_RS04240 0.88 +0.6 971,192 + HER17_RS04240 0.88 -0.9 971,194 + HER17_RS04240 0.88 -0.6 971,195 - HER17_RS04240 0.88 +0.0 971,195 - HER17_RS04240 0.88 -1.2 971,195 - HER17_RS04240 0.88 -0.1 971,195 - HER17_RS04240 0.88 +1.1 971,239 + +0.0 971,239 + -1.0 971,239 + +0.7 971,239 + -0.9 971,239 + -0.8 971,240 - -0.2 971,243 + -1.1 971,243 + -0.9 971,362 + -0.1 971,362 + +0.5 971,363 - -0.3 971,363 - -0.1 971,365 + +0.4 971,365 + -0.2 971,429 - +0.0 971,488 - -0.3 971,488 - +0.1 971,558 + HER17_RS04245 0.19 -1.0 971,630 - HER17_RS04245 0.29 -0.5 971,630 - HER17_RS04245 0.29 -0.8 971,638 + HER17_RS04245 0.30 +0.7 971,639 - HER17_RS04245 0.30 +0.7 971,639 - HER17_RS04245 0.30 -0.0 971,684 - HER17_RS04245 0.36 -0.2 971,684 - HER17_RS04245 0.36 +0.2 971,684 - HER17_RS04245 0.36 +1.5 971,707 - HER17_RS04245 0.39 -0.4 971,807 + HER17_RS04245 0.53 +1.0 971,821 + HER17_RS04245 0.55 -0.3 971,857 - HER17_RS04245 0.60 -0.6 971,917 - HER17_RS04245 0.68 -0.8 971,917 - HER17_RS04245 0.68 -0.5 971,987 + HER17_RS04245 0.78 -0.2 971,987 + HER17_RS04245 0.78 -0.4 971,988 - HER17_RS04245 0.78 -0.4 971,994 - HER17_RS04245 0.79 +0.5 971,994 - HER17_RS04245 0.79 -3.1 972,017 + HER17_RS04245 0.82 -0.9 972,017 + HER17_RS04245 0.82 +0.3 972,041 + HER17_RS04245 0.85 +0.1 972,216 - +0.2 972,218 - -0.5 972,218 - -0.3 972,218 - +0.4 972,218 - -0.8 972,218 - +0.5 972,241 + -0.8 972,280 + -0.4 972,300 + -0.8 972,301 - +1.3 972,301 - +0.1 972,341 + +0.2 972,389 - +0.4 972,389 - +0.9 972,413 - -0.3 972,478 + +0.8 972,555 + +0.4 972,611 - +0.7 972,724 + HER17_RS04250 0.17 +0.7 972,725 - HER17_RS04250 0.17 -0.6 972,854 + HER17_RS04250 0.25 +1.0 972,854 + HER17_RS04250 0.25 -0.5 972,855 - HER17_RS04250 0.25 -0.6 972,855 - HER17_RS04250 0.25 -0.0 972,855 - HER17_RS04250 0.25 -0.6 972,869 - HER17_RS04250 0.26 -0.1 972,962 + HER17_RS04250 0.32 +0.2 973,052 + HER17_RS04250 0.38 +0.1 973,053 - HER17_RS04250 0.38 -0.4 973,053 - HER17_RS04250 0.38 -0.1 973,055 - HER17_RS04250 0.38 -0.1 973,055 - HER17_RS04250 0.38 +0.2 973,055 - HER17_RS04250 0.38 -0.0 973,110 - HER17_RS04250 0.42 +1.3
Or see this region's nucleotide sequence