Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04130 and HER17_RS04135 are separated by 132 nucleotides HER17_RS04135 and HER17_RS04140 overlap by 8 nucleotides HER17_RS04140 and HER17_RS04145 are separated by 448 nucleotides
HER17_RS04130: HER17_RS04130 - phosphopyruvate hydratase, at 940,734 to 942,029
_RS04130
HER17_RS04135: HER17_RS04135 - SDR family NAD(P)-dependent oxidoreductase, at 942,162 to 942,884
_RS04135
HER17_RS04140: HER17_RS04140 - TetR/AcrR family transcriptional regulator, at 942,877 to 943,500
_RS04140
HER17_RS04145: HER17_RS04145 - TonB-dependent siderophore receptor, at 943,949 to 946,087
_RS04145
Position (kb) 942
943
944 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 942.017 kb on + strand at 942.089 kb on + strand at 942.090 kb on - strand at 942.093 kb on + strand at 942.094 kb on - strand at 942.095 kb on + strand at 942.096 kb on - strand at 942.163 kb on + strand at 942.164 kb on - strand at 942.164 kb on - strand at 942.164 kb on - strand at 942.196 kb on - strand at 942.225 kb on + strand at 942.228 kb on + strand at 942.228 kb on + strand at 942.229 kb on - strand at 942.314 kb on - strand, within HER17_RS04135 at 942.314 kb on - strand, within HER17_RS04135 at 942.326 kb on + strand, within HER17_RS04135 at 942.327 kb on - strand, within HER17_RS04135 at 942.330 kb on + strand, within HER17_RS04135 at 942.331 kb on - strand, within HER17_RS04135 at 942.363 kb on - strand, within HER17_RS04135 at 942.395 kb on - strand, within HER17_RS04135 at 942.401 kb on - strand, within HER17_RS04135 at 942.404 kb on + strand, within HER17_RS04135 at 942.404 kb on + strand, within HER17_RS04135 at 942.405 kb on - strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.442 kb on + strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.443 kb on - strand, within HER17_RS04135 at 942.530 kb on + strand, within HER17_RS04135 at 942.531 kb on - strand, within HER17_RS04135 at 942.549 kb on - strand, within HER17_RS04135 at 942.631 kb on + strand, within HER17_RS04135 at 942.632 kb on - strand, within HER17_RS04135 at 942.635 kb on - strand, within HER17_RS04135 at 942.675 kb on + strand, within HER17_RS04135 at 942.675 kb on + strand, within HER17_RS04135 at 942.676 kb on - strand, within HER17_RS04135 at 942.676 kb on - strand, within HER17_RS04135 at 942.753 kb on + strand, within HER17_RS04135 at 942.754 kb on - strand, within HER17_RS04135 at 942.873 kb on - strand at 942.879 kb on - strand at 942.910 kb on + strand at 942.918 kb on - strand at 942.918 kb on - strand at 942.918 kb on - strand at 942.941 kb on + strand, within HER17_RS04140 at 942.941 kb on + strand, within HER17_RS04140 at 942.942 kb on - strand, within HER17_RS04140 at 942.942 kb on - strand, within HER17_RS04140 at 942.942 kb on - strand, within HER17_RS04140 at 942.955 kb on - strand, within HER17_RS04140 at 942.955 kb on - strand, within HER17_RS04140 at 942.957 kb on + strand, within HER17_RS04140 at 943.015 kb on + strand, within HER17_RS04140 at 943.041 kb on + strand, within HER17_RS04140 at 943.042 kb on - strand, within HER17_RS04140 at 943.042 kb on - strand, within HER17_RS04140 at 943.066 kb on - strand, within HER17_RS04140 at 943.102 kb on - strand, within HER17_RS04140 at 943.102 kb on - strand, within HER17_RS04140 at 943.117 kb on + strand, within HER17_RS04140 at 943.168 kb on - strand, within HER17_RS04140 at 943.168 kb on - strand, within HER17_RS04140 at 943.181 kb on + strand, within HER17_RS04140 at 943.181 kb on + strand, within HER17_RS04140 at 943.440 kb on + strand at 943.486 kb on + strand at 943.487 kb on - strand at 943.488 kb on + strand at 943.488 kb on + strand at 943.488 kb on + strand at 943.500 kb on + strand at 943.500 kb on + strand at 943.501 kb on - strand at 943.527 kb on + strand at 943.527 kb on + strand at 943.531 kb on + strand at 943.531 kb on + strand at 943.532 kb on - strand at 943.532 kb on - strand at 943.532 kb on - strand at 943.544 kb on - strand at 943.550 kb on + strand at 943.576 kb on + strand at 943.577 kb on - strand at 943.677 kb on + strand at 943.677 kb on + strand at 943.678 kb on - strand at 943.698 kb on - strand at 943.727 kb on + strand at 943.728 kb on - strand at 943.728 kb on - strand at 943.777 kb on - strand at 943.820 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.822 kb on + strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.823 kb on - strand at 943.826 kb on - strand at 943.826 kb on - strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.867 kb on + strand at 943.868 kb on - strand at 943.868 kb on - strand at 943.869 kb on + strand at 943.869 kb on + strand at 943.869 kb on + strand at 943.869 kb on + strand at 943.870 kb on - strand at 943.870 kb on - strand at 943.870 kb on - strand at 943.887 kb on + strand at 943.888 kb on - strand at 943.888 kb on - strand at 943.938 kb on + strand at 944.048 kb on - strand at 944.142 kb on - strand at 944.214 kb on - strand, within HER17_RS04145 at 944.214 kb on - strand, within HER17_RS04145 at 944.248 kb on + strand, within HER17_RS04145 at 944.256 kb on + strand, within HER17_RS04145 at 944.256 kb on + strand, within HER17_RS04145 at 944.256 kb on + strand, within HER17_RS04145 at 944.256 kb on + strand, within HER17_RS04145 at 944.257 kb on - strand, within HER17_RS04145 at 944.257 kb on - strand, within HER17_RS04145 at 944.257 kb on - strand, within HER17_RS04145 at 944.257 kb on - strand, within HER17_RS04145 at 944.320 kb on - strand, within HER17_RS04145 at 944.377 kb on + strand, within HER17_RS04145 at 944.429 kb on - strand, within HER17_RS04145 at 944.473 kb on + strand, within HER17_RS04145 at 944.483 kb on + strand, within HER17_RS04145
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 942,017 + -1.0 942,089 + +0.4 942,090 - -0.4 942,093 + +0.1 942,094 - +0.2 942,095 + +0.3 942,096 - -0.3 942,163 + -0.8 942,164 - -0.7 942,164 - -2.9 942,164 - -0.4 942,196 - +0.2 942,225 + -0.1 942,228 + +0.1 942,228 + +0.5 942,229 - +0.9 942,314 - HER17_RS04135 0.21 -0.8 942,314 - HER17_RS04135 0.21 +0.8 942,326 + HER17_RS04135 0.23 -1.2 942,327 - HER17_RS04135 0.23 +0.6 942,330 + HER17_RS04135 0.23 -1.0 942,331 - HER17_RS04135 0.23 -0.1 942,363 - HER17_RS04135 0.28 +0.2 942,395 - HER17_RS04135 0.32 +1.0 942,401 - HER17_RS04135 0.33 +0.8 942,404 + HER17_RS04135 0.33 +0.8 942,404 + HER17_RS04135 0.33 +0.2 942,405 - HER17_RS04135 0.34 +0.1 942,442 + HER17_RS04135 0.39 +0.2 942,442 + HER17_RS04135 0.39 +0.3 942,442 + HER17_RS04135 0.39 -1.1 942,442 + HER17_RS04135 0.39 -1.0 942,442 + HER17_RS04135 0.39 -0.5 942,442 + HER17_RS04135 0.39 +0.2 942,443 - HER17_RS04135 0.39 -0.1 942,443 - HER17_RS04135 0.39 -0.0 942,443 - HER17_RS04135 0.39 -1.6 942,443 - HER17_RS04135 0.39 -0.4 942,443 - HER17_RS04135 0.39 -2.1 942,443 - HER17_RS04135 0.39 +0.2 942,530 + HER17_RS04135 0.51 -0.7 942,531 - HER17_RS04135 0.51 -0.8 942,549 - HER17_RS04135 0.54 -0.1 942,631 + HER17_RS04135 0.65 -0.9 942,632 - HER17_RS04135 0.65 -0.8 942,635 - HER17_RS04135 0.65 -0.2 942,675 + HER17_RS04135 0.71 +0.3 942,675 + HER17_RS04135 0.71 -0.1 942,676 - HER17_RS04135 0.71 +0.1 942,676 - HER17_RS04135 0.71 -0.0 942,753 + HER17_RS04135 0.82 -0.1 942,754 - HER17_RS04135 0.82 +0.2 942,873 - +0.3 942,879 - +0.3 942,910 + -1.0 942,918 - +0.1 942,918 - -0.4 942,918 - -0.9 942,941 + HER17_RS04140 0.10 +1.0 942,941 + HER17_RS04140 0.10 -0.6 942,942 - HER17_RS04140 0.10 -0.0 942,942 - HER17_RS04140 0.10 +0.2 942,942 - HER17_RS04140 0.10 -0.5 942,955 - HER17_RS04140 0.12 -0.3 942,955 - HER17_RS04140 0.12 +0.3 942,957 + HER17_RS04140 0.13 +0.3 943,015 + HER17_RS04140 0.22 +1.6 943,041 + HER17_RS04140 0.26 +0.4 943,042 - HER17_RS04140 0.26 -1.9 943,042 - HER17_RS04140 0.26 -0.0 943,066 - HER17_RS04140 0.30 +0.9 943,102 - HER17_RS04140 0.36 +0.3 943,102 - HER17_RS04140 0.36 +0.0 943,117 + HER17_RS04140 0.38 -0.2 943,168 - HER17_RS04140 0.47 +0.6 943,168 - HER17_RS04140 0.47 +0.6 943,181 + HER17_RS04140 0.49 -0.3 943,181 + HER17_RS04140 0.49 -0.5 943,440 + -0.7 943,486 + +0.3 943,487 - -0.1 943,488 + +0.2 943,488 + +0.0 943,488 + -0.7 943,500 + -0.7 943,500 + +0.3 943,501 - -0.3 943,527 + -0.2 943,527 + +1.4 943,531 + +0.8 943,531 + +0.7 943,532 - +0.4 943,532 - +0.6 943,532 - -0.5 943,544 - -0.6 943,550 + -0.0 943,576 + -1.2 943,577 - -0.2 943,677 + -0.3 943,677 + -0.3 943,678 - +0.0 943,698 - -0.2 943,727 + -1.0 943,728 - -0.3 943,728 - -0.5 943,777 - -0.5 943,820 + +0.2 943,822 + +0.3 943,822 + +0.1 943,822 + -0.5 943,822 + -0.6 943,822 + -1.3 943,822 + -0.8 943,823 - +0.6 943,823 - -0.6 943,823 - +0.6 943,823 - +0.1 943,823 - +0.2 943,823 - +0.2 943,823 - -0.4 943,823 - +0.5 943,826 - +0.7 943,826 - -0.1 943,867 + -0.2 943,867 + -0.3 943,867 + +0.1 943,867 + +0.2 943,867 + +0.8 943,867 + +1.1 943,868 - +0.3 943,868 - +0.2 943,869 + -0.9 943,869 + -0.7 943,869 + -0.1 943,869 + +0.4 943,870 - -0.6 943,870 - +0.2 943,870 - +0.3 943,887 + +0.6 943,888 - -0.2 943,888 - -0.2 943,938 + -1.4 944,048 - -0.0 944,142 - +0.7 944,214 - HER17_RS04145 0.12 +0.4 944,214 - HER17_RS04145 0.12 +0.4 944,248 + HER17_RS04145 0.14 +0.1 944,256 + HER17_RS04145 0.14 +0.6 944,256 + HER17_RS04145 0.14 -0.2 944,256 + HER17_RS04145 0.14 +0.4 944,256 + HER17_RS04145 0.14 +0.7 944,257 - HER17_RS04145 0.14 +0.3 944,257 - HER17_RS04145 0.14 +0.7 944,257 - HER17_RS04145 0.14 -0.1 944,257 - HER17_RS04145 0.14 +0.5 944,320 - HER17_RS04145 0.17 +0.2 944,377 + HER17_RS04145 0.20 +0.1 944,429 - HER17_RS04145 0.22 -0.6 944,473 + HER17_RS04145 0.24 -0.1 944,483 + HER17_RS04145 0.25 +0.2
Or see this region's nucleotide sequence