Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04110 and HER17_RS04115 are separated by 53 nucleotides HER17_RS04115 and HER17_RS04120 are separated by 387 nucleotides
HER17_RS04110: HER17_RS04110 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 933,934 to 935,283
_RS04110
HER17_RS04115: HER17_RS04115 - GTP diphosphokinase, at 935,337 to 937,571
_RS04115
HER17_RS04120: HER17_RS04120 - nucleoside triphosphate pyrophosphohydrolase, at 937,959 to 938,771
_RS04120
Position (kb) 935
936
937
938 Strain fitness (log2 ratio) -2
-1
0
1
2 at 934.339 kb on + strand, within HER17_RS04110 at 934.339 kb on + strand, within HER17_RS04110 at 934.339 kb on + strand, within HER17_RS04110 at 934.340 kb on - strand, within HER17_RS04110 at 934.340 kb on - strand, within HER17_RS04110 at 934.340 kb on - strand, within HER17_RS04110 at 934.340 kb on - strand, within HER17_RS04110 at 934.370 kb on + strand, within HER17_RS04110 at 934.371 kb on - strand, within HER17_RS04110 at 934.371 kb on - strand, within HER17_RS04110 at 934.371 kb on - strand, within HER17_RS04110 at 934.372 kb on + strand, within HER17_RS04110 at 934.373 kb on - strand, within HER17_RS04110 at 934.658 kb on - strand, within HER17_RS04110 at 934.692 kb on - strand, within HER17_RS04110 at 934.755 kb on + strand, within HER17_RS04110 at 934.831 kb on - strand, within HER17_RS04110 at 934.835 kb on + strand, within HER17_RS04110 at 934.835 kb on + strand, within HER17_RS04110 at 934.836 kb on - strand, within HER17_RS04110 at 934.839 kb on - strand, within HER17_RS04110 at 934.907 kb on + strand, within HER17_RS04110 at 934.907 kb on + strand, within HER17_RS04110 at 934.908 kb on - strand, within HER17_RS04110 at 934.908 kb on - strand, within HER17_RS04110 at 934.925 kb on + strand, within HER17_RS04110 at 935.040 kb on + strand, within HER17_RS04110 at 935.041 kb on - strand, within HER17_RS04110 at 935.045 kb on + strand, within HER17_RS04110 at 935.046 kb on - strand, within HER17_RS04110 at 935.046 kb on - strand, within HER17_RS04110 at 935.046 kb on - strand, within HER17_RS04110 at 935.046 kb on - strand, within HER17_RS04110 at 935.048 kb on + strand, within HER17_RS04110 at 935.048 kb on + strand, within HER17_RS04110 at 935.048 kb on + strand, within HER17_RS04110 at 935.049 kb on - strand, within HER17_RS04110 at 935.122 kb on + strand, within HER17_RS04110 at 935.122 kb on + strand, within HER17_RS04110 at 935.122 kb on + strand, within HER17_RS04110 at 935.122 kb on + strand, within HER17_RS04110 at 935.122 kb on + strand, within HER17_RS04110 at 935.122 kb on + strand, within HER17_RS04110 at 935.122 kb on + strand, within HER17_RS04110 at 935.122 kb on + strand, within HER17_RS04110 at 935.123 kb on - strand, within HER17_RS04110 at 935.123 kb on - strand, within HER17_RS04110 at 935.123 kb on - strand, within HER17_RS04110 at 935.123 kb on - strand, within HER17_RS04110 at 935.123 kb on - strand, within HER17_RS04110 at 935.123 kb on - strand, within HER17_RS04110 at 935.165 kb on + strand at 935.166 kb on - strand at 935.166 kb on - strand at 935.168 kb on + strand at 935.211 kb on + strand at 935.211 kb on + strand at 935.211 kb on + strand at 935.284 kb on + strand at 935.284 kb on + strand at 935.285 kb on - strand at 935.285 kb on - strand at 935.326 kb on - strand at 935.326 kb on - strand at 935.337 kb on - strand at 935.366 kb on + strand at 935.457 kb on + strand at 935.498 kb on - strand at 935.870 kb on + strand, within HER17_RS04115 at 935.876 kb on + strand, within HER17_RS04115 at 935.876 kb on + strand, within HER17_RS04115 at 935.877 kb on - strand, within HER17_RS04115 at 935.880 kb on + strand, within HER17_RS04115 at 935.880 kb on + strand, within HER17_RS04115 at 935.881 kb on - strand, within HER17_RS04115 at 935.881 kb on - strand, within HER17_RS04115 at 935.902 kb on + strand, within HER17_RS04115 at 935.903 kb on - strand, within HER17_RS04115 at 935.917 kb on + strand, within HER17_RS04115 at 935.917 kb on + strand, within HER17_RS04115 at 935.918 kb on - strand, within HER17_RS04115 at 935.918 kb on - strand, within HER17_RS04115 at 935.918 kb on - strand, within HER17_RS04115 at 935.967 kb on + strand, within HER17_RS04115 at 935.968 kb on - strand, within HER17_RS04115 at 936.018 kb on + strand, within HER17_RS04115 at 936.018 kb on + strand, within HER17_RS04115 at 936.018 kb on + strand, within HER17_RS04115 at 936.019 kb on - strand, within HER17_RS04115 at 936.019 kb on - strand, within HER17_RS04115 at 936.019 kb on - strand, within HER17_RS04115 at 936.019 kb on - strand, within HER17_RS04115 at 936.019 kb on - strand, within HER17_RS04115 at 936.019 kb on - strand, within HER17_RS04115 at 936.019 kb on - strand, within HER17_RS04115 at 936.019 kb on - strand, within HER17_RS04115 at 936.084 kb on + strand, within HER17_RS04115 at 936.084 kb on + strand, within HER17_RS04115 at 936.085 kb on - strand, within HER17_RS04115 at 936.085 kb on - strand, within HER17_RS04115 at 936.085 kb on - strand, within HER17_RS04115 at 936.085 kb on - strand, within HER17_RS04115 at 936.085 kb on - strand, within HER17_RS04115 at 936.085 kb on - strand, within HER17_RS04115 at 936.085 kb on - strand, within HER17_RS04115 at 936.101 kb on + strand, within HER17_RS04115 at 936.101 kb on + strand, within HER17_RS04115 at 936.101 kb on + strand, within HER17_RS04115 at 936.102 kb on - strand, within HER17_RS04115 at 936.102 kb on - strand, within HER17_RS04115 at 936.102 kb on - strand, within HER17_RS04115 at 936.105 kb on + strand, within HER17_RS04115 at 936.105 kb on + strand, within HER17_RS04115 at 936.105 kb on + strand, within HER17_RS04115 at 936.105 kb on + strand, within HER17_RS04115 at 936.106 kb on - strand, within HER17_RS04115 at 936.106 kb on - strand, within HER17_RS04115 at 936.172 kb on + strand, within HER17_RS04115 at 936.218 kb on + strand, within HER17_RS04115 at 936.264 kb on + strand, within HER17_RS04115 at 936.405 kb on + strand, within HER17_RS04115 at 936.405 kb on + strand, within HER17_RS04115 at 936.511 kb on + strand, within HER17_RS04115 at 936.511 kb on + strand, within HER17_RS04115 at 936.511 kb on + strand, within HER17_RS04115 at 936.553 kb on - strand, within HER17_RS04115 at 936.560 kb on + strand, within HER17_RS04115 at 936.580 kb on + strand, within HER17_RS04115 at 936.580 kb on + strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.581 kb on - strand, within HER17_RS04115 at 936.619 kb on - strand, within HER17_RS04115 at 936.675 kb on - strand, within HER17_RS04115 at 936.675 kb on - strand, within HER17_RS04115 at 936.675 kb on - strand, within HER17_RS04115 at 936.675 kb on - strand, within HER17_RS04115 at 936.691 kb on - strand, within HER17_RS04115 at 936.777 kb on + strand, within HER17_RS04115 at 936.778 kb on - strand, within HER17_RS04115 at 936.779 kb on + strand, within HER17_RS04115 at 936.780 kb on - strand, within HER17_RS04115 at 936.846 kb on - strand, within HER17_RS04115 at 936.934 kb on - strand, within HER17_RS04115 at 936.934 kb on - strand, within HER17_RS04115 at 936.934 kb on - strand, within HER17_RS04115 at 936.958 kb on + strand, within HER17_RS04115 at 937.103 kb on + strand, within HER17_RS04115 at 937.103 kb on + strand, within HER17_RS04115 at 937.104 kb on - strand, within HER17_RS04115 at 937.142 kb on - strand, within HER17_RS04115 at 937.318 kb on - strand, within HER17_RS04115 at 937.383 kb on - strand at 937.413 kb on - strand at 937.413 kb on - strand at 937.413 kb on - strand at 937.418 kb on - strand at 937.418 kb on - strand at 937.470 kb on - strand at 937.485 kb on + strand at 937.486 kb on - strand at 937.486 kb on - strand at 937.486 kb on - strand at 937.569 kb on + strand at 937.569 kb on + strand at 937.570 kb on - strand at 937.644 kb on - strand at 937.903 kb on - strand at 937.955 kb on + strand at 937.956 kb on - strand at 937.959 kb on - strand at 937.967 kb on - strand at 938.082 kb on + strand, within HER17_RS04120 at 938.083 kb on - strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.234 kb on + strand, within HER17_RS04120 at 938.235 kb on - strand, within HER17_RS04120 at 938.487 kb on + strand, within HER17_RS04120
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 934,339 + HER17_RS04110 0.30 +0.5 934,339 + HER17_RS04110 0.30 -0.7 934,339 + HER17_RS04110 0.30 -0.7 934,340 - HER17_RS04110 0.30 +0.2 934,340 - HER17_RS04110 0.30 -0.3 934,340 - HER17_RS04110 0.30 +0.2 934,340 - HER17_RS04110 0.30 -0.9 934,370 + HER17_RS04110 0.32 -0.6 934,371 - HER17_RS04110 0.32 -0.5 934,371 - HER17_RS04110 0.32 +0.2 934,371 - HER17_RS04110 0.32 +0.9 934,372 + HER17_RS04110 0.32 +0.3 934,373 - HER17_RS04110 0.33 -0.8 934,658 - HER17_RS04110 0.54 +0.1 934,692 - HER17_RS04110 0.56 +1.3 934,755 + HER17_RS04110 0.61 -0.7 934,831 - HER17_RS04110 0.66 +1.0 934,835 + HER17_RS04110 0.67 -0.3 934,835 + HER17_RS04110 0.67 +0.9 934,836 - HER17_RS04110 0.67 -0.2 934,839 - HER17_RS04110 0.67 -0.1 934,907 + HER17_RS04110 0.72 +0.6 934,907 + HER17_RS04110 0.72 -1.2 934,908 - HER17_RS04110 0.72 +0.2 934,908 - HER17_RS04110 0.72 -0.5 934,925 + HER17_RS04110 0.73 -0.2 935,040 + HER17_RS04110 0.82 +0.9 935,041 - HER17_RS04110 0.82 -0.2 935,045 + HER17_RS04110 0.82 +0.1 935,046 - HER17_RS04110 0.82 +0.5 935,046 - HER17_RS04110 0.82 -0.9 935,046 - HER17_RS04110 0.82 +0.5 935,046 - HER17_RS04110 0.82 -0.1 935,048 + HER17_RS04110 0.83 +0.1 935,048 + HER17_RS04110 0.83 +0.7 935,048 + HER17_RS04110 0.83 -0.2 935,049 - HER17_RS04110 0.83 -0.0 935,122 + HER17_RS04110 0.88 -0.3 935,122 + HER17_RS04110 0.88 +0.3 935,122 + HER17_RS04110 0.88 +0.5 935,122 + HER17_RS04110 0.88 +0.7 935,122 + HER17_RS04110 0.88 -0.6 935,122 + HER17_RS04110 0.88 -1.0 935,122 + HER17_RS04110 0.88 +0.1 935,122 + HER17_RS04110 0.88 +1.0 935,123 - HER17_RS04110 0.88 -0.7 935,123 - HER17_RS04110 0.88 +1.9 935,123 - HER17_RS04110 0.88 -0.5 935,123 - HER17_RS04110 0.88 -0.0 935,123 - HER17_RS04110 0.88 -0.2 935,123 - HER17_RS04110 0.88 -0.1 935,165 + -0.3 935,166 - +0.8 935,166 - -0.1 935,168 + -0.0 935,211 + -0.4 935,211 + +0.0 935,211 + -0.5 935,284 + -1.1 935,284 + -1.2 935,285 - -0.3 935,285 - +0.5 935,326 - +0.4 935,326 - -0.6 935,337 - +0.1 935,366 + -0.3 935,457 + +0.2 935,498 - -0.7 935,870 + HER17_RS04115 0.24 -0.3 935,876 + HER17_RS04115 0.24 -0.0 935,876 + HER17_RS04115 0.24 +0.4 935,877 - HER17_RS04115 0.24 -0.1 935,880 + HER17_RS04115 0.24 +0.5 935,880 + HER17_RS04115 0.24 +0.6 935,881 - HER17_RS04115 0.24 +0.2 935,881 - HER17_RS04115 0.24 +0.1 935,902 + HER17_RS04115 0.25 +0.5 935,903 - HER17_RS04115 0.25 +0.2 935,917 + HER17_RS04115 0.26 +0.7 935,917 + HER17_RS04115 0.26 +0.5 935,918 - HER17_RS04115 0.26 +0.4 935,918 - HER17_RS04115 0.26 +0.4 935,918 - HER17_RS04115 0.26 +0.0 935,967 + HER17_RS04115 0.28 -0.4 935,968 - HER17_RS04115 0.28 +0.4 936,018 + HER17_RS04115 0.30 +0.6 936,018 + HER17_RS04115 0.30 +0.6 936,018 + HER17_RS04115 0.30 -0.1 936,019 - HER17_RS04115 0.31 +0.3 936,019 - HER17_RS04115 0.31 +0.4 936,019 - HER17_RS04115 0.31 +0.3 936,019 - HER17_RS04115 0.31 -1.6 936,019 - HER17_RS04115 0.31 -0.1 936,019 - HER17_RS04115 0.31 +0.6 936,019 - HER17_RS04115 0.31 +0.8 936,019 - HER17_RS04115 0.31 +0.2 936,084 + HER17_RS04115 0.33 -0.6 936,084 + HER17_RS04115 0.33 -0.0 936,085 - HER17_RS04115 0.33 +0.0 936,085 - HER17_RS04115 0.33 -0.4 936,085 - HER17_RS04115 0.33 +0.2 936,085 - HER17_RS04115 0.33 +0.7 936,085 - HER17_RS04115 0.33 -0.3 936,085 - HER17_RS04115 0.33 +0.2 936,085 - HER17_RS04115 0.33 +1.7 936,101 + HER17_RS04115 0.34 +0.4 936,101 + HER17_RS04115 0.34 -1.2 936,101 + HER17_RS04115 0.34 -0.2 936,102 - HER17_RS04115 0.34 -0.3 936,102 - HER17_RS04115 0.34 +0.8 936,102 - HER17_RS04115 0.34 +0.6 936,105 + HER17_RS04115 0.34 +0.1 936,105 + HER17_RS04115 0.34 -0.2 936,105 + HER17_RS04115 0.34 +0.1 936,105 + HER17_RS04115 0.34 +0.3 936,106 - HER17_RS04115 0.34 -0.3 936,106 - HER17_RS04115 0.34 +0.7 936,172 + HER17_RS04115 0.37 -0.3 936,218 + HER17_RS04115 0.39 +1.0 936,264 + HER17_RS04115 0.41 +0.1 936,405 + HER17_RS04115 0.48 +0.8 936,405 + HER17_RS04115 0.48 -0.3 936,511 + HER17_RS04115 0.53 -0.6 936,511 + HER17_RS04115 0.53 +0.5 936,511 + HER17_RS04115 0.53 -0.9 936,553 - HER17_RS04115 0.54 -1.5 936,560 + HER17_RS04115 0.55 +1.1 936,580 + HER17_RS04115 0.56 -0.3 936,580 + HER17_RS04115 0.56 -0.6 936,581 - HER17_RS04115 0.56 -0.2 936,581 - HER17_RS04115 0.56 -0.7 936,581 - HER17_RS04115 0.56 +0.4 936,581 - HER17_RS04115 0.56 +0.0 936,581 - HER17_RS04115 0.56 +0.1 936,581 - HER17_RS04115 0.56 +0.8 936,581 - HER17_RS04115 0.56 -0.6 936,581 - HER17_RS04115 0.56 -0.8 936,581 - HER17_RS04115 0.56 +0.9 936,581 - HER17_RS04115 0.56 -0.3 936,619 - HER17_RS04115 0.57 +0.0 936,675 - HER17_RS04115 0.60 -0.3 936,675 - HER17_RS04115 0.60 -0.1 936,675 - HER17_RS04115 0.60 -2.6 936,675 - HER17_RS04115 0.60 +0.7 936,691 - HER17_RS04115 0.61 -0.3 936,777 + HER17_RS04115 0.64 -0.2 936,778 - HER17_RS04115 0.64 +0.8 936,779 + HER17_RS04115 0.65 +0.8 936,780 - HER17_RS04115 0.65 +0.5 936,846 - HER17_RS04115 0.68 -0.2 936,934 - HER17_RS04115 0.71 -0.3 936,934 - HER17_RS04115 0.71 -0.6 936,934 - HER17_RS04115 0.71 -0.1 936,958 + HER17_RS04115 0.73 +0.1 937,103 + HER17_RS04115 0.79 -0.6 937,103 + HER17_RS04115 0.79 +0.1 937,104 - HER17_RS04115 0.79 +0.5 937,142 - HER17_RS04115 0.81 -1.1 937,318 - HER17_RS04115 0.89 -1.4 937,383 - -0.9 937,413 - -0.5 937,413 - +1.0 937,413 - -0.6 937,418 - +1.5 937,418 - -0.1 937,470 - +0.2 937,485 + +0.2 937,486 - +1.2 937,486 - -0.6 937,486 - +0.2 937,569 + +0.2 937,569 + -0.5 937,570 - +0.3 937,644 - -1.5 937,903 - +0.1 937,955 + +0.2 937,956 - +0.2 937,959 - +0.2 937,967 - +1.3 938,082 + HER17_RS04120 0.15 -0.3 938,083 - HER17_RS04120 0.15 +0.1 938,084 + HER17_RS04120 0.15 +0.3 938,084 + HER17_RS04120 0.15 +0.7 938,084 + HER17_RS04120 0.15 +0.2 938,084 + HER17_RS04120 0.15 -0.2 938,084 + HER17_RS04120 0.15 -0.6 938,085 - HER17_RS04120 0.15 +0.1 938,085 - HER17_RS04120 0.15 +0.1 938,085 - HER17_RS04120 0.15 +0.0 938,085 - HER17_RS04120 0.15 -0.1 938,100 + HER17_RS04120 0.17 +0.6 938,100 + HER17_RS04120 0.17 -0.8 938,100 + HER17_RS04120 0.17 +0.1 938,100 + HER17_RS04120 0.17 +0.2 938,101 - HER17_RS04120 0.17 +0.0 938,101 - HER17_RS04120 0.17 +0.1 938,101 - HER17_RS04120 0.17 +0.2 938,234 + HER17_RS04120 0.34 -1.6 938,235 - HER17_RS04120 0.34 +0.0 938,487 + HER17_RS04120 0.65 -0.4
Or see this region's nucleotide sequence